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Penicillopepsin-JT2, a recombinant enzyme from Penicillium janthinellum and the contribution of a hydrogen bond in subsite S3 to kcat

Published online by Cambridge University Press:  01 May 2000

QING-NA CAO
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada Present address: Department of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107.
MARLENE STUBBS
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
KENNY Q.P. NGO
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
MICHAEL WARD
Affiliation:
Genencor International, Inc., 925 Page Mill Road, Palo Alto, California 94304-1013
ANNIE CUNNINGHAM
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
EMIL F. PAI
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
GUANG-CHOU TU
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada Present address: Department of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107.
THEO HOFMANN
Affiliation:
Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
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Abstract

The nucleotide sequence of the gene ( pepA) of a zymogen of an aspartic proteinase from Penicillium janthinellum with a 71% identity in the deduced amino acid sequence to penicillopepsin (which we propose to call penicillopepsin-JT1) has been determined. The gene consists of 60 codons for a putative leader sequence of 20 amino acid residues, a sequence of about 150 nucleotides that probably codes for an activation peptide and a sequence with two introns that codes for the active aspartic proteinase. This gene, inserted into the expression vector pGPT-pyrG1, was expressed in an aspartic proteinase-free strain of Aspergillus niger var. awamori in high yield as a glycosylated form of the active enzyme that we call penicillopepsin-JT2. After removal of the carbohydrate component with endoglycosidase H, its relative molecular mass is between 33,700 and 34,000. Its kinetic properties, especially the rate-enhancing effects of the presence of alanine residues in positions P3 and P2 of substrates, are similar to those of penicillopepsin-JT1, endothiapepsin, rhizopuspepsin, and pig pepsin. Earlier findings suggested that this rate-enhancing effect was due to a hydrogen bond between the -NH- of P3 and the hydrogen bond accepting oxygen of the side chain of the fourth amino acid residue C-terminal to Asp215. Thr219 of penicillopepsin-JT2 was mutated to Ser, Val, Gly, and Ala. Thr219Ser showed an increase in kcat when a P3 residue was present in the substrate, which was similar to that of the wild-type, whereas the mutants Thr219Val, Thr219Gly, and Thr219Ala showed no significant increase when a P3 residue was added. The results show that the putative hydrogen bond alone is responsible for the increase. We propose that by locking the -NH- of P3 to the enzyme, the scissile peptide bond between P1 and P1 becomes distorted toward a tetrahedral conformation and becomes more susceptible to nucleophilic attack by the catalytic apparatus without the need of a conformational change in the enzyme.

Type
Research Article
Copyright
2000 The Protein Society

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