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Charge–charge interactions influence the denatured state ensemble and contribute to protein stability

Published online by Cambridge University Press:  01 July 2000

C. NICK PACE
Affiliation:
Departments of Medical Biochemistry and Genetics, Biochemistry & Biophysics, Center for Macromolecular Design, Texas A&M University, College Station, Texas 77843-1114
ROY W. ALSTON
Affiliation:
Departments of Medical Biochemistry and Genetics, Biochemistry & Biophysics, Center for Macromolecular Design, Texas A&M University, College Station, Texas 77843-1114
KEVIN L. SHAW
Affiliation:
Departments of Medical Biochemistry and Genetics, Biochemistry & Biophysics, Center for Macromolecular Design, Texas A&M University, College Station, Texas 77843-1114
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Abstract

Several recent studies have shown that it is possible to increase protein stability by improving electrostatic interactions among charged groups on the surface of the folded protein. However, the stability increases are considerably smaller than predicted by a simple Coulomb's law calculation, and in some cases, a charge reversal on the surface leads to a decrease in stability when an increase was predicted. These results suggest that favorable charge–charge interactions are important in determining the denatured state ensemble, and that the free energy of the denatured state may be decreased more than that of the native state by reversing the charge of a side chain. We suggest that when the hydrophobic and hydrogen bonding interactions that stabilize the folded state are disrupted, the unfolded polypeptide chain rearranges to compact conformations with favorable long-range electrostatic interactions. These charge–charge interactions in the denatured state will reduce the net contribution of electrostatic interactions to protein stability and will help determine the denatured state ensemble. To support this idea, we show that the denatured state ensemble of ribonuclease Sa is considerably more compact at pH 7 where favorable charge–charge interactions are possible than at pH 3, where unfavorable electrostatic repulsion among the positive charges causes an expansion of the denatured state ensemble. Further support is provided by studies of the ionic strength dependence of the stability of charge–reversal mutants of ribonuclease Sa. These results may have important implications for the mechanism of protein folding.

Type
FOR THE RECORD
Copyright
2000 The Protein Society

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