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Published online by Cambridge University Press: 05 December 2011
With the recent advances in gene technology, a substantial premium has been placed on the ability to predict protein structure and mechanism from sequence data alone. This is because the direct experimental approaches are more time and labour intensive, and progress is slower. One area of theoretical investigation which has a clear potential to assist in predictive exercises is the natural evolution of protein structure and sequence.
Some aspects of protein evolution, such as the fact that homology of sequence often denotes common ancestry, are routinely considered in predicting three-dimensional structure and mechanism. However, there are other aspects to this natural process which are either not realised or are not appreciated as potential analytical tools.
This article introduces the different ways protein evolution can be investigated and indicates developing techniques as well as those already well established.