In protoplanetary disks, the inner boundary between an MRI active and inactive region has recently been suggested to be a promising site for planet formation. A set of numerical simulations has indeed shown that vortex formation mediated by the Rossby wave instability is a natural consequence of the disk dynamics at that location. However, such models have so far considered only the case of an isothermal equation of state, while the complex thermodynamics is at the heart of how this region works. Using the Godunov code Ramses, we have performed 3D global numerical simulations of protoplanetary disks that relax the isothermal hypothesis. We find that, at the interface, the disk thermodynamics and the turbulent dynamics are intimately entwined, because of the importance of turbulent dissipation and thermal ionisation.