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Genetic variation of the granule-bound starch synthase I (GBSSI) genes in waxy and non-waxy accessions of Chenopodium berlandieri ssp. nuttalliae from Central Mexico

Published online by Cambridge University Press:  17 March 2015

Verónica Cepeda-Cornejo
Affiliation:
Department of Plant and Wildlife Sciences, Brigham Young University, 4105 LSB, Provo, UT84602, USA Biotecnología Vegetal, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, Av. Normalistas No. 800, Col. Colinas de la Normal, CP 44270, Guadalajara, Jalisco, Mexico
Douglass C. Brown
Affiliation:
Department of Plant and Wildlife Sciences, Brigham Young University, 4105 LSB, Provo, UT84602, USA
Guadalupe Palomino
Affiliation:
Laboratorio de Citogenética, Jardín Botánico, Instituto de Biología, Universidad Nacional Autónoma de México, 3er. Circuito Exterior, Ciudad Universitaria, Coyoacán 04510, México, D.F., Mexico
Eulogio de la Cruz
Affiliation:
Depto de Biologia, Instituto Nacional de Investigaciones Nucleares, Carretera México-Toluca s/n, La Marquesa, Ocoyoacac, 52750, México
Melissa Fogarty
Affiliation:
Department of Plant and Wildlife Sciences, Brigham Young University, 4105 LSB, Provo, UT84602, USA
Peter J. Maughan
Affiliation:
Department of Plant and Wildlife Sciences, Brigham Young University, 4105 LSB, Provo, UT84602, USA
Eric N. Jellen*
Affiliation:
Department of Plant and Wildlife Sciences, Brigham Young University, 4105 LSB, Provo, UT84602, USA
*
*Corresponding author. E-mail: [email protected]

Abstract

Huauzontle (Chenopodium berlandieri ssp. nuttalliae) is a locally important vegetable crop native to the highland valleys of Central Mexico and a potential source of genes for improving its Andean sister crop, quinoa (Chenopodium quinoa). A previous work involving two huauzontle lines identified one waxy genotype that lacked amylose due to mutations in granule-bound starch synthase I (GBSSI), major amylose-synthesis genes with two constituent subgenomes, A and B. We conducted this study to determine the extent of waxy genotypes and cryptic GBSSI mutations in 11 huauzontle accessions or landrace populations extending from Puebla in the southeast to Jalisco in the northwest. This represents one of the first published studies of genetic variation in C. berlandieri ssp. nuttalliae. Accessions were phenotyped for opaque versus translucent seed morphology and their seed starches were stained with Lugol's Stain. In addition, complete or partial GBSSI genes from their A and B genomes were polymerase chain reaction (PCR)-amplified, cloned and sequenced. Seven accessions were either wholly or partially non-waxy while six were either entirely or partially waxy. All waxy accessions carried the same putatively null alleles, designated gbssIa-tp (A-genome) and gbssIb-del (B-genome). The identification of publicly available genotypes carrying gbssIa-tp and their potential use in breeding waxy grain quinoa is discussed.

Type
Research Article
Copyright
Copyright © NIAB 2015 

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References

Aiemnaka, P, Wongkaew, A, Chanthaworn, J, Nagashima, SK, Boonma, S, Authapun, J, Jenweerawat, S, Kongsila, P, Kittipadakul, P, Nakasathien, S, Sreewongchai, T, Wannarat, W, Vichukit, V, Lopez-Lavalle, LAB, Ceballos, H, Rojanaridpiched, C and Phumichai, C (2012) Molecular characterization of a spontaneous waxy starch mutation in cassava. Crop Science 52: 21212130.Google Scholar
Atwell, WA, Patrick, BM, Johnson, LA and Gloss, RW (1983) Characterization of quinoa starch. Cereal Chemistry 60: 911.Google Scholar
Bhargava, A, Shukla, S and Ohri, D (2006) Karyotypic studies on some cultivated and wild species of Chenopodium (Chenopodiaceae). Genetic Resources and Crop Evolution 53: 13091320.CrossRefGoogle Scholar
Bhargava, A, Shukla, S and Ohri, D (2010) Mineral composition in foliage of some cultivated and wild species of Chenopodium . Spanish Journal of Agricultural Research 8: 371376.Google Scholar
Brown, DC, Cepeda-Cornejo, V, Maughan, PJ and Jellen, EN (2014) Characterization of the Granule-Bound Starch Synthase I gene in Chenopodium . The Plant Genome. DOI 10.3835/plantgenome2014.09.0051.Google Scholar
Crofts, N, Abe, K, Aihara, S, Itoh, R, Nakamura, Y, Itoh, K and Fujita, N (2012) Lack of starch synthase IIIa and high expression of granule-bound starch synthase I synergistically increase the apparent amylose content in rice endosperm. Plant Science 193: 6269.Google Scholar
Dellaporta, SL (1993) Plant DNA miniprep and microprep:Version 2.1-2.3. In: Freeling, M and Walbot, V (eds) The Maize Handbook.Google Scholar
Dellaporta, SL and Hicks, JB (1983) A plant DNA minipreparation: version II. Plant Molecular Biology Reporter 1: 1920.Google Scholar
Denyer, K, Johnson, P, Zeeman, S and Smith, AM (2001) The control of amylose synthesis. Journal of Plant Physiology 158: 479487.CrossRefGoogle Scholar
García-Andrade, JM and De La Cruz, TE (2011) Las chías de México. In El ININ Hoy. Ocoyoacac, Mexico: Biology Department, Instituto Nacional de Investigaciones Nucleares.Google Scholar
Hirano, HY, Eiguchi, M and Sano, Y (1998) A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice. Molecular Biology and Evolution 15: 978987.Google Scholar
Huang, XQ and Brule-Babel, A (2012) Sequence diversity, haplotype analysis, association mapping and functional marker development in the waxy and starch synthase IIa genes for grain-yield-related traits in hexaploid wheat (Triticum aestivum L.). Molecular Breeding 30: 627645.Google Scholar
Hunt, HV, Moots, HM, Graybosch, RA, Jones, H, Parker, M, Romanova, O, Jones, MK, Howe, CJ and Trafford, K (2013) Waxy phenotype evolution in the allotetraploid cereal broomcorn millet: butations at the GBSSI locus in their functional and phylogenetic context. Molecular Biology and Evolution 30: 109122.Google Scholar
Jellen, EN, Kolano, BA, Sederberg, MC, Bonifacio, A and Maughan, PJ (2011) Chenopodium . In: Kole, C (ed.) Wild Crop Relatives: Genomic and Breeding Resources. Legume Crops and Forages. New York: Springer, pp. 3561.Google Scholar
Kolano, B, Gardunia, BW, Michalska, M, Bonifacio, A, Fairbanks, D, Maughan, PJ, Coleman, CE, Stevens, MR, Jellen, EN and Maluszynska, J (2011) Chromosomal localization of two novel repetitive sequences isolated from the Chenopodium quinoa Willd. genome. Genome 54: 710717.Google Scholar
Lindeboom, N, Chang, PR, Tyler, RT and Chibbar, RN (2005) Granule-bound starch synthase I (GBSSI) in quinoa (Chenopodium quinoa Willd.) and its relationship to amylose content. Cereal Chemistry 82: 246250.Google Scholar
Liu, LL, Ma, XD, Liu, SJ, Zhu, CL, Jiang, L, Wang, YH, Shen, Y, Ren, YL, Dong, H, Chen, LM, Liu, X, Zhao, ZG, Zhai, HQ and Wan, JM (2009) Identification and characterization of a novel Waxy allele from a Yunnan rice landrace. Plant Molecular Biology 71: 609626.Google Scholar
Maughan, PJ, Kolano, BA, Maluszynska, J, Coles, ND, Bonifacio, A, Rojas, J, Coleman, CE, Stevens, MR, Fairbanks, DJ, Parkinson, SE and Jellen, EN (2006) Molecular and cytological characterization of ribosomal RNA genes in Chenopodium quinoa and Chenopodium berlandieri . Genome 49: 825839.Google Scholar
Palomino, G, Hernandez, LT and Torres, ED (2008) Nuclear genome size and chromosome analysis in Chenopodium quinoa and C. berlandieri subsp. nuttalliae . Euphytica 164: 221230.Google Scholar
Park, YJ, Nemoto, K, Nishikawa, T, Matsushima, K, Minami, M and Kawase, M (2009) Molecular cloning and characterization of granule bound starch synthase I cDNA from a grain amaranth (Amaranthus cruentus L.). Breeding Science 59: 351360.Google Scholar
Park, YJ, Nemoto, K, Nishikawa, T, Matsushima, K, Minami, M and Kawase, M (2012a) Origin and evolution of the waxy phenotype in Amaranthus hypochondriacus: evidence from the genetic diversity in the Waxy locus. Molecular Breeding 29: 147157.CrossRefGoogle Scholar
Park, YJ, Nishikawa, T, Tomooka, N and Nomoto, K (2012b) The molecular basis of mutations at the Waxy locus from Amaranthus caudatus L.: evolution of the waxy phenotype in three species of grain amaranth. Molecular Breeding 30: 511520.Google Scholar
Park, YJ, Nishikawa, T, Tomooka, N and Nomoto, K (2012c) Molecular cloning and expression analysis of a gene encoding soluble starch synthase I from grain amaranth (Amaranthus cruentus L.). Molecular Breeding 30: 10651076.Google Scholar
Prakash, D, Nath, P and Pal, M (1993) Composition, variation of nutritional contents in leaves, seed protein, fat and fatty acid profile of Chenopodium species. Journal of the Science of Food and Agriculture 62: 203205.CrossRefGoogle Scholar
Repo-Carrasco, R, Espinoza, C and Jacobsen, SE (2003) Nutritional value and use of the Andean crops quinoa (Chenopodium quinoa) and kaniwa (Chenopodium pallidicaule). Food Reviews International 19: 179189.Google Scholar
Smith, BD and Yarnell, RA (2009) Initial formation of an indigenous crop complex in eastern North America at 3800 B.P. Proceedings of the National Academy of Sciences (USA) 106: 65616566.Google Scholar
Storchova, H, Drabesova, J, Chab, D, Kolar, J and Jellen, EN (2014) The introns in FLOWERING LOCUS T-LIKE (FTL) genes are useful markers for tracking paternity in tetraploid Chenopodium quinoa Willd. Genetic Resources and Crop Evolution . DOI 10.1007/s10722-014-0200-8.Google Scholar
Walsh, BM, Adhikary, D, Maughan, PJ, Emshwilller, E and Jellen, EN (2015) Chenopodium (Amaranthaceae) polyploidy inferences from Salt Overly Sensitive 1 (SOS1) data. American Journal of Botany. (submitted 8/14).Google Scholar
Wang, SJ, Yeh, KW and Tsai, CY (1999) Molecular characterization and expression of starch granule-bound starch synthase in the sink and source tissues of sweet potato. Physiologia Plantarum 106: 253261.Google Scholar
Wang, X, Feng, B, Xu, ZB, Sestili, F, Zhao, GJ, Xiang, C, Lafiandra, D and Wang, T (2014) Identification and characterization of granule bound starch synthase I (GBSSI) gene of tartary buckwheat (Fagopyrum tataricum Gaertn.). Gene 534: 229235.CrossRefGoogle ScholarPubMed
Wilson, HD (1990) Quinua and relatives (Chenopodium sect. Chenopodium subsect. Cellulata). Economic Botany 44: 92110.Google Scholar
Wilson, HD and Heiser, CB (1979) The origin and evolutionary relationships of ‘huauzontle’ (Chenopodium nuttalliae Safford), domesticated chenopod of Mexico. American Journal of Botany 66: 198206.Google Scholar
Yeku, O and Frohman, MA (2011) Rapid amplification of cDNA ends (RACE). Methods in Molecular Biology 703: 107122.Google Scholar
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