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Autonomously replicating sequences (ARS) from mitochondrial DNA of Phytophthora nicotianae: functional and structural analysis

Published online by Cambridge University Press:  01 September 1998

PETR KARLOVSKY
Affiliation:
Institute of Phytomedicine, University of Hohenheim, Otto-Sander-Str. 5, D-70599 Stuttgart, Germany
BERTHOLD FARTMANN
Affiliation:
(formerly) Department of Molecular Genetics, Centre for Environment and Medicine, Grisebaschstr. 6, D-37077 Goettingen, Germany
ECKHARD MÜHLBAUER
Affiliation:
(formerly) Department of Molecular Genetics, Centre for Environment and Medicine, Grisebaschstr. 6, D-37077 Goettingen, Germany
HERMANN H. PRELL
Affiliation:
(formerly) Department of Molecular Genetics, Centre for Environment and Medicine, Grisebaschstr. 6, D-37077 Goettingen, Germany
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Abstract

Four DNA sequences (ARSs) that are able to initiate DNA replication in yeast were isolated from mitochondrial DNA of Phytophthora nicotianae and localized on its physical map. Nuclear sequences from P. nicotianae were shown to initiate DNA replication in yeast only very rarely. Minimal regions necessary for replication catalysed by mitochondrial ARSs were delimited by DNase I digestion and sequenced. Transformation efficiencies were estimated for full-length ARS-carrying DNA fragments. Segregation rates and mitotic stabilities in S. cerevisiae were determined for the two shortest subclones of each of the three delimited ARSs. Replication properties of all three ARSs were similar to those of a yeast nuclear ARS sequence. Sequence analysis revealed the presence of many copies of the motif (T/G)ATATTTT, which is related to the ARS core consensus sequences, in all three elements. In two of them, four copies of the motif and its reverse complements were arranged in palindromes. In addition, whole ARS core sequences and long segments consisting exclusively of A and T nucleotides were found in all ARS analysed. These features indicate that an HMG-like (high mobility group) DNA-binding protein similar to ABF2 from yeast may participate in DNA packaging also in non-fungal mitochondrial lineages.

Type
Research Article
Copyright
The British Mycological Society 1998

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