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Molecular Mechanics and Dynamics Studies of Chemisorbed Monolayers of Alkanethiolates

Published online by Cambridge University Press:  01 January 1992

Yitzhak Shnidman
Affiliation:
Computational Science Laboratory, Eastman Kodak Company, Rochester, NY 14650
James E. Eilers
Affiliation:
Computational Science Laboratory, Eastman Kodak Company, Rochester, NY 14650
Abraham Ulman
Affiliation:
Corporate Research Laboratories, Eastman Kodak Company, Rochester, NY 14650
Harrell Sellers
Affiliation:
Department of Chemistry, South Dakota State University, Brookings, SD 57007
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Abstract

We study ordering within closely packed monolayers of thiol derivatives self-assembled on gold substrates by chemisorption from solution. We discuss constant stress molecular mechanics and dynamics simulations of alkanethiolate monolayers on Au(111) and Au(l00) surfaces. In the first case, we use the MM2 force field augmented with classical chemisorption parameters obtained from fitting to results of ab initioquantum mechanical calculations. In the second, the chemisorption to the Au(l00) surface was accomplished by using harmonic constraints to restrict the thiolate groups to the square lattice. It is shown that two chemisorption modes of alkanethiolate on Au(l11) exist, and that both give closely packed ordered monolayers. In the system on Au(100), rearrangement towards close-packing is achieved at the expense of distortions that increase the intrachain elastic energy.

Type
Research Article
Copyright
Copyright © Materials Research Society 1993

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References

REFERENCES

1. Ulman, A., An Introduction to Ultrathin Organic Films From Langmuir–Blodgett to Self-Assembly(Academic Press, Boston, 1991) and references therein.Google Scholar
2. Kitaigorodskii, A.I., Organic Chemical Crystallography(Consultants Bureau, New York, 1959) pp. 177217.Google Scholar
3. Garoff, S., Proc. Natl. Acad. Sci. USA 84, 4729 (1987), and references cited therein.Google Scholar
4. Langmuir, I., J. Chem. Phys. 1, 756 (1933).Google Scholar
5. Epstein, H.T., J. Colloid Chem. 54, 1053 (1950).Google Scholar
6. Ulman, A., and Scaringe, R.P., Langmuir, 8, 894 (1991).Google Scholar
7. Widrig, C.A., Chung, C., and Porter, M.D., J. Electroanal. Chem. 310, 335 (1991).Google Scholar
8. Bryant, M.A., and Pemberton, J., J. Am. Chem. Soc. 113, 3630 (1991); ibid. 113, 8284 (1991).Google Scholar
9. Strong, L., and Whitesides, G.M., Langmuir, 4, 546 (1988).Google Scholar
10. Chidsey, C.E.D., Liu, G.-Y., Rowntree, P., and Scoles, G., J. Chem. Phys. 91, 4421 (1989).Google Scholar
11. Chidsey, C.E.D., and Loiacono, D.N., Langmuir, 6, 709 (1990).Google Scholar
12. Sellers, H., Ulman, A., Shnidman, Y., and Eilers, J.E., J. Am. Chem. Soc., submitted.Google Scholar
13. Mohamadi, F., Richards, N.G.J., Guida, W.C., Liskamp, R., Lipton, M., Caufield, C., Chang, G., Hendrickson, T., and Still, C.W., J. Comput. Chem. 11, 440 (1990).Google Scholar
14.Of course, one molecule per unit cell does not explore conformational space in the monolayer. However, we decided to look at this simpler case so that we can better understand the interplay of the binding constant and the intermolecular packing. Full MD simulations at finite temperature with nine molecules per unit cell are on the way.Google Scholar
15.The gold atoms were not full participants in the molecular minimization. The van der Waals (vdW) interactions of the gold atoms with C, H, and S were considered to be implicitly contained in the stretching and bending constants of Table I.Google Scholar
16. Harris, A.L., Tothberg, L., Deboid, L.H., Levinos, N.J., and Dhar, L., Phys. Rev. Lett. 64, 2086 (1990).Google Scholar
17. Nuzzo, R.G., Zegarski, B.R., and Dubois, L.H., J. Am. Chem. Soc. 109, 733 (1987).Google Scholar
18. Porter, M.D., Bright, T.B., Allara, D.L., and Chidsey, C.E.D., J. Am. Chem. Soc. 109, 3559 (1987).Google Scholar
19. Ulman, A., Tillman, N., and Eilers, J.E. Langmuir, , 5, 1147 (1989).Google Scholar
20. Hautman, J., and Klein, M.L., J. Chem. Phys. 91, 4994 (1989). Hautman, J., Bareman, J., Mar, W., and Klein, M.L., J. Chem. Soc. Faraday Trans. 87, 2031 (1991).Google Scholar
21. Liu, G.-Y., Ph.D. thesis, Princeton University, 1992.Google Scholar