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Microbiological influences on fracture surfaces of intact mudstone and the implications for geological disposal of radioactive waste

Published online by Cambridge University Press:  05 July 2018

H. Harrison ,
D. Wagner ,
H. Yoshikawa ,
J. M. West ,
A. E. Milodowski ,
Y. Sasaki ,
G. Turner ,
A. Lacinska ,
S. Holyoake  and
J. Harrington
...Show all authors
H. Harrison*
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
D. Wagner
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
H. Yoshikawa
Affiliation:
Japan Atomic Energy Agency (JAEA), Muramatsu 4-33, Tokai-mura, 319-1194 Ibaraki, Japan
J. M. West
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
A. E. Milodowski
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Y. Sasaki
Affiliation:
Japan Atomic Energy Agency (JAEA), Muramatsu 4-33, Tokai-mura, 319-1194 Ibaraki, Japan
G. Turner
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
A. Lacinska
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
S. Holyoake
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
J. Harrington
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
D. Noy
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
P. Coombs
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
K. Bateman
Affiliation:
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
K. Aoki
Affiliation:
Japan Atomic Energy Agency (JAEA), 2-432 Hokushin Horonobe-cho, Teshio-gun, Hokkaido, 098-3224, Japan
*
*E-mail: [email protected]
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Abstract

The significance of the potential impacts of microbial activity on the transport properties of host rocks for geological repositories is an area of active research. Most recent work has focused on granitic environments. This paper describes pilot studies investigating changes in transport properties that are produced by microbial activity in sedimentary rock environments in northern Japan. For the first time, these short experiments (39 days maximum) have shown that the denitrifying bacteria, Pseudomonas denitrificans, can survive and thrive when injected into flow-through column experiments containing fractured diatomaceous mudstone and synthetic groundwater under pressurized conditions. Although there were few significant changes in the fluid chemistry, changes in the permeability of the biotic column, which can be explained by the observed biofilm formation, were quantitatively monitored. These same methodologies could also be adapted to obtain information from cores originating from a variety of geological environments including oil reservoirs, aquifers and toxic waste disposal sites to provide an understanding of the impact of microbial activity on the transport of a range of solutes, such as groundwater contaminants and gases (e.g. injected carbon dioxide).

Keywords

microbial activityrock transport propertiessedimentary rocksPseudomonas denitrificansmudstonefluid chemistryradioactive waste
Type
Research Article
Information
Mineralogical Magazine , Volume 75 , Issue 4 , August 2011 , pp. 2449 - 2466
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2011

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References

Anderson, C., Pedersen, K. and Jakobsson, A.M. (2006) Autoradiographic comparisons of radionuclide adsorption between subsurface anaerobic biofilms and granitic host rocks. Geomicrobiology Journal, 23, 15–19.CrossRefGoogle Scholar
Aoki, K., Kunimura, T., Hirota, Y. and Tazaki, K. (2003) Preliminary microbial analyses of ground-water in Horonobe Underground Research Laboratory, Hokkaido, Japan. Proceedings, International Symposium of the Kanazawa University 21st Century COE Program, 1, 244–247.Google Scholar
Beveridge, T.J., Makin, S.A., Kadurugamuwa, J.L. and Li, Z. (1997) Interactions between biofilms and the environment. FEMS Microbiology Reviews, 20, 291–303.CrossRefGoogle ScholarPubMed
Brydie, J.R., Wogelius, R.A., Merrifield, CM., Boult, S., Gilbert, P., Allison, D. and Vaughan, D.J. (2005) The μ2M project on quantifying the effects of biofilm growth on hydraulic properties of natural porous media and on sorption equilibria: an overview. Pp. 131 — 144 in: Understanding the micro to macro behaviour of rock-fluid systems (R. A. Shaw, editor). Geological Society Special Publication, 249. The Geological Society, London.CrossRefGoogle Scholar
Chapelle, F.H. (2000) Ground-water microbiology and geochemistry. John Wiley and Sons, New York, 468 pp.Google Scholar
Coombs, P., West, J.M., Wagner, D., Turner, G., Noy, D.J., Milodowski, A.E., Lacinska, A., Harrison, H. and Bateman, K. (2008) Influence of biofilms on transport of fluids in subsurface granitic environments — Some mineralogical and petrographical observations of materials from column experiments. Mineralogical Magazine, 72, 393—397.CrossRefGoogle Scholar
Coombs, P., Wagner, D., Bateman, K., Harrison, H., Milodowski, A.E., Noy, D. and West, J.M. (2010) The role of biofilms in subsurface transport processes. Quarterly Journal of Engineering Geology and Hydrogeology, 43, 131—139.CrossRefGoogle Scholar
Cunningham, A.L., Warwood, B., Sturman, P., Horrigan, K., James, G., Costerton, JW. and Hiebert, R. (1997) Biofilm processes in porous media — practical applications. Pp. 325—344 in: The Microbiology of the Terrestrial Deep Subsurface (Amy, P.A. and Haldeman, D.L., editors). CRC Lewis Publishers, New York, 356 pp.Google Scholar
Cuss, R.J., Reeves, H.J., Noy, D.J. and Harrington, J.F. (2006) Gas transport processes in argillaceous rocks within the EDZ: BGS contribution to NF-PRO WP4.4.1. British Geological Survey Commissioned Report, CR/06/243, 30 pp.Google Scholar
D'Hondt, S., Rutherford, S. and Spivack, A.J. (2002) Metabolic activity of subsurface life in deep-sea sediments. Science, 295, 2067–2070.CrossRefGoogle ScholarPubMed
Ehrlich, H.L. (1999) Microbes as geologic agents: their role in mineral formation. Geomicrobiology Journal, 16, 135–153.CrossRefGoogle Scholar
Ferris, F.G., Konhauser, K.O., Lyvén, B. and Pedersen, K. (1999) Accumulation of metals by bacteriogenic iron oxides in a subterranean environment. Geomicrobiology Journal, 16, 181—192.Google Scholar
Frederickson, J.K., Garland, T.R., Hicks, R. J., Thomas, J.M., Li, S.W. and McFadden, K.M. (1989) Lithotrophic and heterotrophic bacteria in deep subsurface sediments and their relation to sediment properties. Geomicrobiology Journal, 7, 53—66.Google Scholar
Goldstein, J.I., Newbury, D.E., Echlin, P., Joy, D.C., Fiori, C. and Lifshin, E. (1981) Scanning Electron Microscopy and X-ray micro analysis. Plenum Press, New York, 689 pp.CrossRefGoogle Scholar
Hallbeck, L. and Pedersen, K. (2008) Characterization of microbial processes in deep aquifers of the Fennoscandian Shield. Applied Geochemistry, 23, 1796–1819.CrossRefGoogle Scholar
Hama, K., Bateman, K., Coombs, P. Hards, V.L., Milodowski, A.E., West, J.M., Wetton, P.D., Yoshida, H. and Aoki, K. (2001) Influence of bacteria on rock-water interaction and clay mineral formation in subsurface granitic environments. Clay Minerals, 36, 599–613.CrossRefGoogle Scholar
Harrison, H., West, J.M., Milodowski, A.E., Bateman, K., Coombs, P., Harrington, J., Holyoake, S., Lacinska, A., Turner, G. and Wagner, D. (2010) Microbial influences on fracture surfaces of intact Horonobe mudstone (BioTran Progress Report Sept 2009 — January 2010). British Geological Survey Report, OR/10/067.Google Scholar
Hillier, S., Suzuki, K. and Cotter-Howells, J. (2001) Quantitative determination of cerussite (lead carbo-nate) by X-ray powder diffraction and inferences for lead speciation and transport in stream sediments from a former lead mining area of Scotland. Applied Geochemistry, 16, 597–608.CrossRefGoogle Scholar
Hobbie, J.E., Daley, R.J. and Jasper, S. (1977) Use of nucleopore filters for counting bacteria by fluor-escent microscopy. Applied and Environmental Microbiology, 33, 1225–1228.CrossRefGoogle Scholar
Horseman, S.T., Cuss, R.J., Reeves, H.J., and Noy, D. (2005) Potential for self-healing of fractures in plastic clays and argillaceous rocks under repository conditions. OECD Nuclear Energy Agency Report, NEA-CC-3, 351 pp.Google Scholar
Humphreys, P.N., West, J.M. and Metcalfe, R. (2009) Microbial effects on repository performance. Technical Report QRS-1378Q-1. Nuclear Decommissioning Authority, Cumbria, England.Google Scholar
Ishü, E., Funaki, H., Tokiwa, T. and Ota, K. (2010) Relationship between fault growth mechanism and permeability variations with depth of siliceous mudstones in northern Hokkaido, Japan. Journal of Structural Geology, 32, 1792–1805.CrossRefGoogle Scholar
Jass, J. and Lappin-Scott, H.M. (1992) Practical course on biofilm formation using the modified Robbins Device. Biofilm Technologies Research Group, University of Exeter, Exeter, UK.Google Scholar
Kato, K., Nagaosa, K., Kimura, H., Katsuyama, C., Hama, K., Kunimaru, T., Tsunogai, U. and Aoki, K. (2009) Unique distribution of deep groundwater bacteria constrained by geological setting. Environmental Microbiology Reports, 1, 569—574.CrossRefGoogle ScholarPubMed
Keith-Roach, M.J. and Livens, F.R. (editors) (2002) Interactions of microorganisms with radionuclides. Elsevier, Oxford, UK, 400 pp.Google Scholar
Konhauser, K.O., Fisher, Q.J., Fyfe, W.S., Longstaff, F.J. and Powell, M.A. (1998) Authigenic mineralization and detrital clay binding by freshwater biofilms: The Brahmani River, India. Geomicrobiology Journal, 15, 209–222.CrossRefGoogle Scholar
Konhauser, K.O. (2007) Introduction to Geomicrobiology. Blackwell Science, Maiden, Massachusetts, USA, 425 pp.Google Scholar
Lin, L-H., Wang, P-L., Rumble, D., Lippmann-Pipke, J., Boice, E., Pratt, L.M., Sherwood Lollar, B., Brodie, E.L., Hazen, T.C., Andersen, G.L., DeSantis, T.Z., Moser, D.P., Kershaw, D. and Onstott, T.C. (2006) Long-term sustainability of a high-energy, low-diversity crustal biome. Science, 314, 479—482.CrossRefGoogle ScholarPubMed
Milodowski, A.E., West, J.M., Pearce, J.M., Hyslop, E.K., Basham, I.R. and Hooker, P.J. (1990) Uranium-mineralized microorganisms associated with uraniferous hydrocarbons in southwest Scotland. Nature, 347, 465–467.CrossRefGoogle Scholar
Milodowski, A.E., Barnes, R.P., Bouch, J., Kemp, S.J. and Wagner, D. (2004) Characterisation of fractured rock and fracture mineralisation in Horonobe Boreholes HDB-6, HDB-7 and HDB-8: Final Report. British Geological Survey Report, CR/04/251.Google Scholar
Pedersen, K. (1999) Subterranean microorganisms and radioactive waste disposal in Sweden. Engineering Geology, 52, 163–172.CrossRefGoogle Scholar
Poison, E.J., Buckman, J.O., Bowen, D.G., Todd, A.C., Gow, M.M. and Cuthbert, S.J. (2010) An environmental scanning electron microscope investigation into the effect of biofilm on the wettability of quartz. Society of Petroleum Engineers Journal, 15, 223–227.Google Scholar
Shock, E.L. (2009) Minerals and energy sources for microorganisms. Economic Geology, 104, 1235–1248.CrossRefGoogle Scholar
Snyder, R.L. and Bish, D.L. (1989) Quantitative analysis. Pp. 101—144 in: Modern Powder Diffraction (Bish, D.L., and Post, J.E., editors). Reviews in Mineralogy 20. Mineralogical Society of America, Washington D.C., 369 pp.Google Scholar
Southam, G., and Saunders, J.A. (2005) The geomicrobiology of ore deposits. Economic Geology, 100, 1067–1084.CrossRefGoogle Scholar
Stroes-Gascoyne, S. and West, J.M. (1996) An overview of microbial research related to high-level nuclear waste disposal with emphasis on the Canadian concept for the disposal of nuclear fuel waste. Canadian Journal of Microbiology, 42, 349—366.CrossRefGoogle Scholar
Stroes-Gascoyne, S., Schippers, A., Schwyn, B., Poulain, S., Sergeant, C., Simanoff, M., Le Marrec, C., Altmann, S., Nagaoka, T., Mauclaire, L., McKenzie, J., Daumas, S., Vinsot, A., Beaucaire, C. and Matray, S-M. (2007) Microbial community analysis of Opalinus Clay drill core samples from the Mont Terri Underground Research Laboratory, Switzerland. Geomicrobiology Journal 24, 1—17.CrossRefGoogle Scholar
Tochigi, Y., Yoshikawa, H. and Yui, M. (2007) Modeling studies on microbial effects on ground-water chemistry. Pp. 575—580 in: Scientific Basis for Nuclear Waste Management XXX, (Begg, B., Dunn, D.S. and Poinssot, C., editors). MRS symposium proceedings series, 985. Materials Research Society, Warrendale, Pennsylvania, USA, 642pp.Google Scholar
Tuck, V.A., Edyvean, R.G.J., West, J.M., Bateman, K., Coombs, P., Milodowski, A.E. and McKervey, J.A. (2006) Biologically induced clay formation in subsurface granitic environments. Journal of Geochemical Exploration, 90, 123—133.CrossRefGoogle Scholar
Waseda, A., Kajiwara, Y., Nishita, H. and Iwano, H. (1996) Oil-source rock correlation in the Tempoku Basin of Northern Hokkaido, Japan. Organic Geochemistry, B24, 351–362.CrossRefGoogle Scholar
West, J.M., McKinley, I.G. and Chapman, N.A. (1982) Microbes in deep geological systems and their possible influence on radioactive waste disposal. Radioactive Waste Management and the Nuclear Fuel Cyclel, 1–15.Google Scholar
West, J.M. (1995) A review of progress in the geomicrobiology of radioactive waste disposal. Radioactive Waste Management and Environmental Restoration, 19, 263–283.Google Scholar
West, J.M. and Chilton, P.J. (1997) Aquifers as environments for microbiological activity. Quarterly Journal of Engineering Geology, 30, 147–154.CrossRefGoogle Scholar
West, J.M. and McKinley, I.G. (2002) The geomicro-biology of radioactive waste disposal. Pp. 2661—2674 in: The Encyclopaedia of Environmental Microbiology (Bitton, G., editor). John Wiley, New York, 3527 pp.Google Scholar