Hostname: page-component-586b7cd67f-dlnhk Total loading time: 0 Render date: 2024-11-29T00:49:33.040Z Has data issue: false hasContentIssue false

Joanneumite, Cu(C3N3O3H2)2(NH3)2, a new mineral from Pabellón de Pica, Chile and the crystal structure of its synthetic analogue

Published online by Cambridge University Press:  02 January 2018

Hans-Peter Bojar*
Affiliation:
Universalmuseum Joanneum, Centre of Natural History, Weinzöttlstraße 16, A-8045 Graz, Austria
Franz Walter
Affiliation:
Institute of Earth Sciences (Mineralogy and Petrology), University of Graz, Universitätsplatz 2, A–8010 Graz, Austria
Judith Baumgartner
Affiliation:
Institute of Inorganic Chemistry, Technical University of Graz, Stremayrgasse 16/IV, A–8010 Graz, Austria
*

Abstract

The new mineral joanneumite was found at Pabellón de Pica Mountain, Iquique Province, Tarapacá Region, Chile, where it occurs as violet microcrystalline aggregates up to 2 mm in size in small cracks in a gabbroic rock, which is covered by a guano deposit. Associated minerals are salammoniac, dittmarite, möhnite and gypsum. Joanneumite is non-fluorescent and the Mohs hardness is 1. The calculated density is 2.020 g cm–3. The infrared spectrum of joanneumite shows the frequencies of NH3 and isocyanurate groups and the absence of absorptions of H2O molecules and OH ions. The chemical composition (electron microprobe data, the hydrogen was calculated from the structural formula, wt.%) is C 20.33, N 31.11, O 28.34, Cu 17.27, Zn 0.24, H 2.82, total 100.11. The empirical formula is Cu0.96Zn0.01N7.84C5.98O6.25H9.96 and the idealized formula is CuN8C6O6H10 with the structural formula Cu(C3N3O3H2)2(NH3)2. Due to the lack of suitable single crystals the synthetic analogue of joanneumite was prepared for the single-crystal structure refinement. The crystal structure was solved and refined to R = 0.025 based upon 1166 unique reflections with I > 2σ (I). Joanneumite is triclinic, space group P1̄, a = 4.982(1), b = 6.896(1), c = 9.115(2) Å, α = 90.53(3), β = 97.85(3), γ = 110.08(3)°, V = 290.8(1) Å3, Z = 1 obtained from single-crystal data at 100 K, which are in good agreement with cell parameters from powder diffraction data of joanneumite at 293 K: a = 5.042(1), b = 6.997(1), c = 9.099(2) Å, α = 90.05(3), β = 98.11(2), γ = 110.95(3)° and V = 296.3(1) Å3. The eight strongest lines of the powder X-ray diffraction pattern are [d, Å (I,%) (hkl)] 6.52 (68) (010), 5.15 (47) (011), 4.66 (21) (100, 110), 4.35 (9) (1̄11), 3.29 (6) (1̄20), 3.22 (7) (1̄1̄1), 3.140 (100) (1̄21), 2.074 (7) (1̄32). The crystal structure of joanneumite is identical with the structure of synthetic bis(isocyanurato) diamminecopper(II).

Type
Research Article
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2017

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Bojar, H.-P., Walter, F., Baumgartner, J. and Färber, G. (2010) Ammineite, CuCl2(NH3)2, a new species containing an ammine complex: Mineral data and crystal structure. The Canadian Mineralogist, 48, 13591371.CrossRefGoogle Scholar
Bruker (2008) Programs SMART, SAINT SADABS, XPREP, and SHELXTL. Bruker AXS Inc., Madison, Wisconsin, USA.Google Scholar
Bruker-AXS (2009) TOPAS Software User Manual Version 4.2. Karlsruhe, Germany.Google Scholar
Chukanov, N.V., Aksenov, S.M., Rastsvetaeva, R.K., Lyssenko, K.A., Belakovskiy, D.I., Färber, G., Möhn, G. and Van, K.V (2015a) Antipinite, KNa3Cu2(C2O4)4, a new mineral species from a guano deposit at Pabellón de Pica, Chile. Mineralogical Magazine, 79, 11111121.CrossRefGoogle Scholar
Chukanov, N.V., Aksenov, S.M., Rastsvetaeva, R.K., Pekov, I.V., Belakovskiy, D.I. and Britvin, S.N. (2015b) Möhnite, (NH4)K2Na(SO4)2, a new guano mineral from Pabellón de Pica, Chile. Mineralogy and Petrology, 109, 643648.CrossRefGoogle Scholar
Chukanov, N.V., Britvin, S.N., Möhn, G., Pekov, I.V., Zubkova, N.V., Nestola, F., Kasatkin, A.V. and Dini, M. (2015c) Shilovite, natural copper(II) tetrammine nitrate, a new mineral species. Mineralogical Magazine, 79, 613623.CrossRefGoogle Scholar
Chukanov, N.V., Zubkova, N.Y, Mohn, G., Pekov, I.V., Pushcharovsky, D.Yu. and Zadov, A.E. (2015d) Chanabayaite, Cu2(N3C2H2)2Cl(NH3Cl,H2O,n)4 a new mineral containing triazolate anion. Zapiski Rossiiskogo Mineralogicheskogo Obshchestva, 144(2), 3647.Google Scholar
Chukanov, N.V., Zubkova, N.Y, Mohn, G., Pekov, I.V., Pushcharovsky, D.Yu. and Zadov, A.E. (201 5e) Chanabayaite, Cu2(N3C2H2)2Cl(NH3Cl,H2O,n)4, a new mineral containing triazolate anion. Geology of Ore Deposits, 57(8) 712720.CrossRefGoogle Scholar
Falvello, L.R., Pascual, I., Tomas, M. andUrriolabeitia, E. P (1997) The cyanurate ribbon in structural coordination chemistry: an aggregate structure that persists across different coordination environments and structural types. Journal of the American Chemical Society, 119, 1189411902.CrossRefGoogle Scholar
Moreno, T. and Gibbons, W. (editors) (2007) The Geology of Chile. The Geological Society, London, 414 pp.Google Scholar
Pouchou, J.L. and Pichoir, F. (1991) Quantitative analysis of homogeneous or stratified microvolumes applying the model ‘PAP'. pp. 31-75 in: Electron Probe Quantitation (K.F.J. Heinrich and D.E. Newbury, editors). Plenum Press, New York.Google Scholar
Seifer, G.B. (2002) Cyanuric Acid and Cyanurates. Russian Journal of Coordination Chemistry, 28/5, 301-324.CrossRefGoogle Scholar
Sheldrick, G.M. (2015) Crystal structure refinement with SHELXL. Acta Crystallographica, C71, 38.Google Scholar
Slade, P.G., Raupach, M. and Radoslovich, E.W. (1973) An X-ray and infrared study of bis(isocyanurato) diamminecopper(II). Acta Crystallographica, B29, 279286.CrossRefGoogle Scholar
Taylor, R.M. (1972) Metal Cyanurate Compounds formed directly from Metal Salts and Urea. Zeitschrift für allgemeine und anorganische Chemie, 390, 8596.CrossRefGoogle Scholar
Zubkova, N.V., Chukanov, N.V., Pekov, I.Y, Mohn, G., Giester, G., Yapaskurt, V.O., Lykova, I.S. and Pushcharovsky, D.Yu. (2015) The crystal structure of the natural 1,2,4-triazolate compound NaCu2Cl3[N3C2H2]2[NH3]2-4H2O. Zeitschrift für Kristallographie - Crystalline Materials, 231(1), 4753.Google Scholar