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Phylogeny and taxonomy of Staurothele (Verrucariaceae, lichenized ascomycetes) from the karst of northern Vietnam

Published online by Cambridge University Press:  09 July 2014

Cécile GUEIDAN ,
Truong VAN DO  and
Ngan Thi LU
Cécile GUEIDAN
Affiliation:
Natural History Museum, Department of Life Sciences, Cromwell Road, London, SW7 5BD, UK. Email: [email protected]
Truong VAN DO
Affiliation:
Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Hanoi, Vietnam Institute of Botany, Technical University of Dresden, Zellescher Weg 20b, 01062 Dresden, Germany
Ngan Thi LU
Affiliation:
Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Hanoi, Vietnam
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Abstract

The crustose genus Staurothele (Verrucariaceae, Ascomycota) is a common component of the lichen flora from subneutral to alkaline silicate rocks in temperate to cold-temperate climates. Our field study in the karst system of northern Vietnam showed that it is also common on dry to humid limestone in the wet tropics. Molecular data revealed that species of Staurothele from Vietnam belong to an unnamed clade sister to the genus Endocarpon, together with the tropical Australian species Staurothele pallidopora and Staurothele diffractella, a North American species recently transferred to Endocarpon based on molecular data. The genus Willeya is here resurrected for this clade of crustose epilithic Staurothele with pale ascospores. Eight new combinations are proposed and three new species of Willeya are described from Vietnam. Sampling tropical members of a lichen family previously mostly known from temperate areas contributed significantly to improving its generic classification.

Keywords

classificationEndocarpongeneric delimitationlichensVerrucarialesWilleya
Type
Articles
Information
The Lichenologist , Volume 46 , Issue 4 , July 2014 , pp. 515 - 533
Copyright
Copyright © British Lichen Society 2014 

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References

Ahmadjian, V. & Heikkila, H. (1970) The culture and synthesis of Endocarpon pusillum and Staurothele clopima . Lichenologist 4: 259–267.Google Scholar
Bouly de Lesdain, M. (1921) Notes lichénologiques, XVIII bis. Bulletin de la Société Botanique de France 68: 490–495.Google Scholar
Brodo, I. M., Sharnoff, S. D. & Sharnoff, S. (2001) Lichens of North America. New Haven and London: Yale University Press.Google Scholar
Clauzade, G. & Roux, C. (1985) Likenoj de Okcidenta Europo. Ilustrita Determinlibro. Bulletin de la Société Botanique du Centre-Ouest, Numéro Special 7: 1–893.Google Scholar
Clements, F. E. (1909) The Genera of Fungi. Minneapolis: H. W. Wilson.CrossRefGoogle Scholar
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for Basidiomycetes: application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118.Google Scholar
Groenhart, P. (1954) Malaysian lichens – IV. Reinwardtia 2: 385–402.Google Scholar
Gueidan, C., Roux, C. & Lutzoni, F. (2007) Using a multigene analysis to assess generic delineation and character evolution in the Verrucariaceae (Eurotiomycetes, Ascomycota). Mycological Research 111: 1147–1170.CrossRefGoogle Scholar
Gueidan, C., Savić, S., Thüs, H., Roux, C., Keller, C., Tibell, L., Prieto, M., Heiðmarsson, S., Breuss, O., Orange, A., et al. (2009) Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: recent progress and remaining challenges. Taxon 58: 184–208.Google Scholar
Harada, H. (1992) A taxonomic study on the lichen genus Staurothele (Verrucariaceae) in Japan. Natural History Research 2: 39–42.Google Scholar
Harada, H. & Iwatsuki, Z. (1989) Lectotypification of Staurothele japonica B. de Lesd. (Verrucariaceae, Lichenes). Journal of Japanese Botany 64: 33–36.Google Scholar
Harada, H. & Wang, L.-S. (1996) Two new freshwater species of Verrucariaceae from Yunnan, China. Lichenologist 28: 297–305.Google Scholar
Harada, H. & Wang, L.-S. (2006) Taxonomic study on the freshwater species of Verrucariaceae (lichenized Ascomycota) of Yunnan, China (2). Genus Staurothele . Lichenology 5: 13–22.Google Scholar
Janex-Favre, M. C. & Wagner, J. (1986) Recherches ontogéniques et structurales sur les pycnides des Dermatocarpacées (Pyrénolichens). Bulletin de la Société Mycologique de France 102: 161–182.Google Scholar
Kirk, P. M., Cannon, P. F., Minter, D. W. & Stalpers, J. A. (2008) Dictionary of the Fungi, 10th edition. Wallingford, UK: CAB International.Google Scholar
Kornerup, A. & Wanscher, J. H. (1961) Methuen Handbook of Colour. London: Methuen & Co.Google Scholar
Lutzoni, F., Wagner, P., Reeb, V. & Zoller, S. (2000) Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology 49: 628–651.CrossRefGoogle ScholarPubMed
Maddison, W. P. & Maddison, D. R. (2003) MacClade: Analysis of Phylogeny and Character Evolution. Version 4.6. Sunderland, Massachusetts: Sinauer Associates.Google Scholar
Malme, G. O. A. (1919) De svenska arterna av lavslägtet Staurothele Norm. Svensk Botanisk Tidskrift 12: 194–203.Google Scholar
Mason-Gamer, R. & Kellogg, E. (1996) Testing for phylogenetic conflict among molecular datasets in the tribe Triticeae (Graminae). Systematic Biology 45: 524–545.Google Scholar
McCarthy, P. M. (1995) Notes on Australian Verrucariaceae (lichenised Ascomycotina). 5. Staurothele pallidopora sp. nov. from south-eastern Queensland. Muelleria 8: 275–277.Google Scholar
McCarthy, P. M. (2001) Staurothele. In Flora of Australia. Volume 58A, Lichens 3 (McCarthy, P. M., ed.): 173–174. Melbourne: ABRS/CSIRO.Google Scholar
Miller, M. A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, Louisiana, pp 1–8.Google Scholar
Muggia, L., Gueidan, C. & Grube, M. (2010) Phylogenetic placement of some morphologically unusual members of Verrucariales . Mycologia 102: 835–846.Google Scholar
Müller Argoviensis, J. (1883) Lichenologische Beiträge 18. Flora 66: 344–354.Google Scholar
Müller Argoviensis, J. (1889) Lichenologische Beiträge 31. Flora 72: 142–147.Google Scholar
Posada, D. & Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.Google Scholar
Prieto, M., Martínez, I., Aragón, G. & Otálora, M. A. G. (2010) Phylogenetic study of Catapyrenium s. str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis . Mycologia 102: 291–304.Google Scholar
Prieto, M., Martínez, I., Aragón, G., Gueidan, C. & Lutzoni, F. (2012) Molecular phylogeny of Heteroplacidium, Placidium, and related catapyrenioid genera (Verrucariaceae, lichen-forming Ascomycota). American Journal of Botany 99: 23–35.Google Scholar
Rehner, S. A. & Samuels, G. J. (1994) Taxonomy and phylogeny of Gliocladium analyzed by large subunit rDNA sequences. Mycological Research 98: 625–634.Google Scholar
Ronquist, F. & Huelsenbeck, J. P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.Google Scholar
Savić, S. & Tibell, L. (2008) Atla, a new genus in the Verrucariaceae (Verrucariales). Lichenologist 40: 269–282.CrossRefGoogle Scholar
Savić, S., Tibell, L., Gueidan, C. & Lutzoni, F. (2008) Molecular phylogeny and systematics of Polyblastia (Verrucariaceae, Eurotiomycetes) and allied genera. Mycological Research 112: 1307–1318.Google Scholar
Servít, M. (1955) Nove lisejniky. Rozpravy Československé Akademie Věd 65: 1–45.Google Scholar
Smith, C. W., Aptroot, A., Coppins, B. J., Fletcher, A., Gilbert, O. L., James, P. W. & Wolseley, P. A. (eds) (2009) The Lichens of Great Britain and Ireland. London: British Lichen Society.Google Scholar
Stamatakis, A., Ludwig, T. & Meier, H. (2005) A fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456–463.CrossRefGoogle ScholarPubMed
Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 75: 758–771.Google Scholar
Swinscow, T. D. V. (1963) Pyrenocarpous lichens: 4. Guide to the British species of Staurothele . Lichenologist 2: 152–166.Google Scholar
Swofford, D. L. (1999) PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods) Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.Google Scholar
Thomson, J. W. (1991) The lichen genus Staurothele in North America. Bryologist 94: 351–367.CrossRefGoogle Scholar
Thomson, J. W. (2002) Staurothele. In Lichen Flora of the Greater Sonoran Desert Region. Vol. I (Nash, T. H. III, Ryan, B. D., Gries, C. & Bungartz, F., eds): 468–472. Tempe, Arizona: Lichens Unlimited, Arizona State University.Google Scholar
Thomson, J. W. & Murray, B. M. (1988) Staurothele discedens and Gyalidea lecideopsis var. convarians rediscovered in Alaska, together with Polyblastia cucurbitula, sp. nov. Bryologist 91: 86–90.Google Scholar
Thüs, H. & Schultz, M. (2009) Fungi: Lichens Pt. 1 (Freshwater Flora of Central Europe). Heidelberg, Germany: Spektrum Akademischer Verlag.Google Scholar
Thüs, H., Muggia, L., Pérez-Ortega, S., Favero-Longo, S. E., Joneson, S., O'Brien, H., Nelsen, M. P., Duque-Thüs, R., Grube, M., Friedl, T., et al. (2011) Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota). European Journal of Phycology 46: 399–415.Google Scholar
Vainio, E. A. (1921) Lichenographia Fennica I. Pyrenolichenes iisque proximi Pyrenomycetes et Lichenes imperfecti. Acta Societatis pro Fauna et Flora Fennica 49: 1–274.Google Scholar
Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246.CrossRefGoogle ScholarPubMed
White, T. J., Bruns, T., Lee, S. & Taylor, J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications (Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J., eds): 315–322. New York: Academic Press.Google Scholar
Yoshimura, I. & Shimada, R. (1980) Fine structure of lichen plectenchymas viewed with the scanning electron microscope. Bulletin of Kochi Gakuen Junior College 11: 13–28.Google Scholar
Zahlbruckner, A. (1930) Lichenes (Übersicht über sämtliche bisher aus China bekannten Flechten). In Symbolae Sinicae. Botanische Ergebnisse der Expedition der Akademie der Wissenschaften in Wien nach Südwest-China 1914–1918. III (Handel-Mazetti, H., ed.): 1–254. Wien: J. Springer.Google Scholar
Zahlbruckner, A. (1934) Die von der Deutschen Limnologischen Sunda-Expedition gesammelten Flechten. Archiv für Hydrobiologie, Supplement Band 12: 730–738.Google Scholar
Zolan, M. E. & Pukkila, P. J. (1986) Inheritance of DNA methylation in Coprinus cinereus . Molecular and Cellular Biology 6: 195–200.Google Scholar