Hostname: page-component-586b7cd67f-tf8b9 Total loading time: 0 Render date: 2024-11-23T03:21:56.688Z Has data issue: false hasContentIssue false
  • English
  • Français

A molecular phylogeny of Pilocarpaceae Zahlbr., including a new species of Tapellaria Müll. Arg. and new records of foliicolous lichenized fungi from Thailand

Published online by Cambridge University Press:  11 November 2020

Wei-Cheng Wang Open the ORCID record for Wei-Cheng Wang [Opens in a new window] ,
Ek Sangvichien ,
Tie-Zheng Wei  and
Jiang-Chun Wei
Wei-Cheng Wang
Affiliation:
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing100101, China University of Chinese Academy of Sciences, Beijing100049, China
Ek Sangvichien
Affiliation:
Department of Biology, Faculty of Science, Ramkhamhaeng University, Bangkok10240, Thailand
Tie-Zheng Wei
Affiliation:
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing100101, China Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw05282, Myanmar
Jiang-Chun Wei*
Affiliation:
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing100101, China University of Chinese Academy of Sciences, Beijing100049, China
*
Author for correspondence: Jiang-Chun Wei. E-mail: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

The phylogeny of foliicolous taxa in Pilocarpaceae was reconstructed using Bayesian and maximum likelihood analyses of concatenated ITS and mtSSU sequences. Sixty-six new partial sequences representing 36 taxa were generated and 29 sequences were downloaded from GenBank. Our results indicate that Lasioloma R. Sant. is nested within a paraphyletic Calopadia Vězda, whereas Fellhanera Vězda is polyphyletic and the phylogenetic relationships of Eugeniella Lücking et al. and Sporopodium Mont. with Fellhanera require further investigation. In addition, Tapellaria parvimuriformis W. C. Wang & J. C. Wei is described as a new species from Khao Yai National Park, Thailand, and is characterized by its small muriform ascospores, grey campylidia with a pale base, and short conidia. Eight new records of foliicolous lichens for Thailand are also listed.

Keywords

AsiaBayesian analysisfoliicolous lichensITSmtSSU
Type
Standard Papers
Information
The Lichenologist , Volume 52 , Issue 5 , September 2020 , pp. 377 - 385
Check for updates
Copyright
Copyright © British Lichen Society 2020

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Andersen, H and Ekman, S (2005) Disintegration of the Micareaceae (lichenized Ascomycota): a molecular phylogeny based on mitochondrial rDNA sequences. Mycological Research 109, 21–30.CrossRefGoogle ScholarPubMed
Aptroot, A and Sipman, H (1993) Musaespora, a genus of pyrenocarpous lichens with campylidia, and other additions to the foliicolous lichen flora of New Guinea. Lichenologist 25, 121–135.CrossRefGoogle Scholar
Boonpragob, K, Homchantara, N, Coppins, BJ, McCarthy, PM and Wolseley, PA (1998) An introduction to the lichen flora of Khao Yai National Park, Thailand. Botanical Journal of Scotland 50, 209–219.CrossRefGoogle Scholar
Castresana, J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17, 540–552.CrossRefGoogle ScholarPubMed
Darriba, D, Taboada, GL, Doallo, R and Posada, D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9, 772.CrossRefGoogle ScholarPubMed
Gardes, M and Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2, 113–118.CrossRefGoogle ScholarPubMed
Huelsenbeck, JP and Ronquist, F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754–755.CrossRefGoogle ScholarPubMed
Katoh, K, Asimenos, G and Toh, H (2009) Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology 537, 39–64.CrossRefGoogle ScholarPubMed
Kistenich, S, Timdal, E, Bendiksby, M and Ekman, S (2018) Molecular systematics and character evolution in the lichen family Ramalinaceae (Ascomycota: Lecanorales). Taxon 67, 871–904.10.12705/675.1CrossRefGoogle Scholar
Krempelhuber, A (1874) Lichenes foliicolae quos legit O. Beccari annis 1866 et 1867 in insula Borneo. München: A. Krempelhuber.Google Scholar
Lücking, R (2008) Foliicolous lichenized fungi. Flora Neotropica Monograph 103, 1–866.Google Scholar
Lücking, R and Sérusiaux, E (1997) Musaespora kalbii (lichenized Ascomycetes: Melanommatales), a new foliicolous lichen with a pantropical distribution. Nordic Journal of Botany 16, 661–668.CrossRefGoogle Scholar
Lücking, R, Seavey, F, Common, RS, Beeching, SQ, Breuss, O, Buck, WR, Crane, L, Hodges, M, Hodkinson, BP, Lay, E, et al. (2011) The lichens of Fakahatchee Strand Preserve Park, Florida: proceedings from the 18th Tuckerman Workshop. Bulletin of the Florida Museum of Natural History 49, 127–186.Google Scholar
Lücking, R, Hodkinson, BP and Leavitt, SD (2017) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – approaching one thousand genera. Bryologist 119, 361–416.CrossRefGoogle Scholar
Müller, J (1890 a) Lichenes Epiphylli Novi. Basel: H. Georg.Google Scholar
Müller, J (1890 b) Lichenologische Beiträge 33. Flora 73, 187–202.Google Scholar
Naksuwankul, K and Lücking, R (2019) Three new species and new records of foliicolous lichen genus Porina (Porinaceae, Ostropales) and artificial key to species from Thailand. Phytotaxa 400, 51–63.10.11646/phytotaxa.400.2.1CrossRefGoogle Scholar
Neuwirth, G and Stocker-Wörgötter, E (2017) Tapellaria palaeotropica (Pilocarpaceae), a new foliicolous lichen species from the Seychelles, and a world key to the genus. Lichenologist 49, 253–258.CrossRefGoogle Scholar
Neuwirth, G, Stocker-Wörgötter, E, Boonpragob, K and Saipunkaew, W (2014) Coenogonium coronatum (Ostropales: Coenogoniaceae), a new foliicolous species from Thailand, ecological aspects and a key to the species occurring in the country. Bryologist 117, 161–164.CrossRefGoogle Scholar
Nguyen, TT, Joshi, Y, Lücking, R, Wang, XY, Dzung, NA, Koh, YJ and Hur, JS (2010) Notes on some new records of foliicolous lichens from Vietnam. Taiwania 55, 402–406.Google Scholar
Nguyen, TT, Joshi, Y, Lücking, R, Nguyen, AD, Wang, XY, Koh, YJ and Hur, JS (2011) Seven new records of foliicolous lichens from Vietnam. Mycotaxon 117, 93–99.CrossRefGoogle Scholar
Nylander, W (1891) Sertum Lichenaeae Tropicae e Labuan et Singapore. Paris: Schmidt.Google Scholar
Papong, K, Boonpragob, K and Lücking, R (2007) New species and new records of foliicolous lichens from Thailand. Lichenologist 39, 47–56.CrossRefGoogle Scholar
Papong, K, Lücking, R, Thammathaworn, A and Boonpragob, K (2009) Four new taxa of Chroodiscus (thelotremoid Graphidaceae) from Southeast Asia. Bryologist 112, 152–163.10.1639/0007-2745-112.1.152CrossRefGoogle Scholar
Ronquist, F and Huelsenbeck, JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.CrossRefGoogle ScholarPubMed
Santesson, R (1952) Foliicolous lichens I. A revision of the taxonomy of the obligately foliicolous, lichenized fungi. Symbolae Botanicae Upsalienses 12(1), 1–590.Google Scholar
Sérusiaux, E (1996) Foliicolous lichens from Madeira, with the description of a new genus and two new species and a world-wide key of foliicolous Fellhanera. Lichenologist 28, 197–227.CrossRefGoogle Scholar
Sérusiaux, E, Lücking, R and Sparrius, LB (2008) Opegrapha viridistellata (Roccellaceae), a new foliicolous lichen species from the Paleotropics. Mycotaxon 104, 223–227.Google Scholar
Stamatakis, A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.10.1093/bioinformatics/btu033CrossRefGoogle ScholarPubMed
Vainio, EA (1920) Lichenes Insularum Philippinarum III. Acta Societas Scientiarum Fennicae 15, 1–368.Google Scholar
Vainio, EA (1923) Lichenes Insularum Philippinarum IV. Annales Academiae Scientiarum Fennicae A19, 1–84.Google Scholar
Vězda, A (1977) Beitrag zur Kenntnis foliikoler Flechten Vietnams. Casopis Slezskeho Muzea v Opave, Ser. A 26, 21–33.Google Scholar
Wang, WC and Wei, JC (2018) Arthonia, Byssoloma, Calenia, Chroodiscus, Coenogonium, Eremothecella, and Semigyalecta spp. new to China. Mycotaxon 133, 487–497.10.5248/133.487CrossRefGoogle Scholar
White, TJ, Bruns, TD, Lee, S and Taylor, J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis, MA, Gelfand, DH, Sninsky, JJ and White, TJ (eds), PCR Protocols: A Guide to Methods and Applications. San Diego: Academic Press, pp. 315–321.Google Scholar
Zoller, S, Scheidegger, C and Sperisen, C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31, 511–516.CrossRefGoogle Scholar