A new method is described that records the periods of photosynthetic and respiratory activity in lichen thalli in situ by measuring the actinic chlorophyll fluorescence response of the photobiont. The technique is based on a pulse amplitude modulation fluorometer that was specially developed for continuous and unattended measurements in the Antarctic. In Livingston Island, South Shetland Islands, the periods of metabolic activity of Usnea antarctica were recorded simultaneously with the microclimatic parameter in its natural environment. In one series of diurnal measurements the fluorescence response signal was treated as a qualitative on/off signal for photosynthetic activity. In a parallel series the diurnal courses of net photosynthesis and dark respiration of rain-moistened thalli of U. antarctica were measured by means of a CO2/H2O porometer together with gravimetric water content determination. Both methods showed marked coincidence from low water content to water saturation of the thalli. In the laboratory both the actinic fluorescence response and the photosynthetic rate as a function of thallus water content were investigated in Caloplaca regalis. In the laboratory experiments the CO2 exchange cuvette contained a balance for gravimetric water content control as well as the glass-fibre optics of the fluorescence analysis equipment. The experiments revealed a quantitative relationship between actinic fluorescence and photosynthetic rate within the range of optimum to limiting low thallus water content. The method described is suitable for measurements of lichen activity in field microclimate studies and should allow continuous unattended year-round measurements of lichen activity, which are needed in remote regions such as Antarctica.