Hostname: page-component-cd9895bd7-8ctnn Total loading time: 0 Render date: 2024-12-23T13:06:16.814Z Has data issue: false hasContentIssue false
  • English
  • Français

Micarea soralifera sp. nov., a new sorediate species in the M. prasina group

Published online by Cambridge University Press:  03 May 2016

Beata GUZOW-KRZEMIŃSKA ,
Paweł CZARNOTA ,
Anna ŁUBEK  and
Martin KUKWA
Beata GUZOW-KRZEMIŃSKA
Affiliation:
Department of Molecular Biology, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland. Email: [email protected]
Paweł CZARNOTA
Affiliation:
Department of Agroecology, Faculty of Biology and Agriculture, University of Rzeszów, Ćwiklińskiej 1a, PL-35-601 Rzeszów, Poland
Anna ŁUBEK
Affiliation:
Institute of Biology, The Jan Kochanowski University in Kielce, Świętokrzyska 15, PL-25-406 Kielce, Poland
Martin KUKWA
Affiliation:
Department of Plant Taxonomy and Nature Protection, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
Get access Rights & Permissions [Opens in a new window]

Abstract

Micarea soralifera sp. nov., a new sorediate species belonging to the M. prasina group, is characterized by soralia developing directly from the endoxylic thallus or small external areoles, as well as the presence of micareic acid. Phylogenetic analyses of mtSSU rDNA sequences have shown that its closest relative is M. subviridescens. ITS rDNA sequence, a marker proposed as the universal barcoding region of fungi, was generated from the holotype.

Keywords

ITS rDNAlichenized fungilichens, mtSSU rDNAsecondary metabolitestaxonomy
Type
Articles
Information
The Lichenologist , Volume 48 , Issue 3 , May 2016 , pp. 161 - 169
Copyright
© British Lichen Society, 2016 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403–410.Google Scholar
Barton, J. & Lendemer, J. C. (2014) Micarea micrococca and M. prasina, the first assessment of two very similar species in eastern North America. Bryologist 117: 223–231.Google Scholar
Brand, M., van den Boom, P. P. G. & Sérusiaux, E. (2014) Unveiling a surprising diversity in the lichen genus Micarea (Pilocarpaceae) in Réunion (Mascarenes archipelago, Indian Ocean). Lichenologist 46: 413–439.Google Scholar
Buschbom, J. & Mueller, G. M. (2006) Testing “species pair” hypotheses: evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes . Molecular Biology and Evolution 23: 574–586.CrossRefGoogle ScholarPubMed
Cáceres, M. E. S., Mota, D. A., de Jesus, L. S. & Aptroot, A. (2013) The new lichen species Micarea corallothallina from Serra da Jibóia, an Atlantic rainforest enclave in Bahia, NE Brazil. Lichenologist 45: 371–373.Google Scholar
Coppins, B. J. (1983) A taxonomic study of the lichen genus Micarea in Europe. Bulletin of the British Museum (Natural History), Botany series 11: 17–214.Google Scholar
Coppins, B. J. (1992) Micarea Fr. (1825). In The Lichen Flora of Great Britain and Ireland(O. W. Purvis, B. J. Coppins, D. L. Hawksworth, P. W. James & D. M. More, eds): 371–384. London: Natural History Museum Publications.Google Scholar
Coppins, B. J. (2002) Checklist of Lichens of Great Britain and Ireland. London: British Lichen Society.Google Scholar
Coppins, B. J. & Tønsberg, T. (2001) A new xanthone-containing Micarea from Northwest Europe and the Pacific Northwest of North America. Lichenologist 33: 93–96.Google Scholar
Czarnota, P. (2007) The lichen genus Micarea (Lecanorales, Ascomycota) in Poland. Polish Botanical Studies 23: 1–199.Google Scholar
Czarnota, P. & Guzow-Krzemińska, B. (2010) A phylogenetic study of the Micarea prasina group shows that Micarea micrococca includes three distinct lineages. Lichenologist 42: 7–21.Google Scholar
Elix, J. A., Jones, A. J., Lajide, L., Coppins, B. J. & James, P. W. (1984) Two new diphenyl ethers and a new depside from the lichen Micarea prasina Fr. Australian Journal of Chemistry 37: 2349–2364.Google Scholar
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.Google Scholar
Galtier, N., Gouy, M. & Gautier, C. (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Computational Applied Biosciences 12: 543–548.Google Scholar
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118.Google Scholar
Gouy, M., Guindon, S. & Gascuel, O. (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221–224.Google Scholar
Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696–704.CrossRefGoogle ScholarPubMed
Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307–321.CrossRefGoogle ScholarPubMed
Guzow-Krzemińska, B. & Węgrzyn, G. (2000) Potential use of restriction analysis of PCR-amplified DNA fragments in taxonomy of lichens. Mycotaxon 76: 305–313.Google Scholar
Harris, R. C. & Lendemer, J. C. (2010) A review of Lecania croatica (syn. Catillaria croatica) in North America. Opuscula Philolichenum 8: 41–49.Google Scholar
Hedlund, J. T. (1892) Kritische Bemerkungen über einige Arten der Flechtengattungen Lecanora (Ach.), Lecidea (Ach.) und Micarea (Fr.). Bihang till Kungliga svenska Vetenskaps-Akademiens Handlingar 18.3: 1–104.Google Scholar
Huelsenbeck, J. P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.Google Scholar
Kukwa, M., Łubek, A., Szymczyk, R. & Zalewska, A. (2012) Seven lichen species new to Poland. Mycotaxon 120: 105–118.Google Scholar
Nelsen, M. P. & Gargas, A. (2008) Phylogenetic distribution and evolution of secondary metabolites in the lichenized fungal genus Lepraria (Lecanorales: Stereocaulaceae). Nova Hedwigia 86: 115–131.Google Scholar
Nelsen, M. P. & Gargas, A. (2009) Assesing clonality and chemotype monophyly in Thamnolia (Icmadophilaceae). Bryologist 112: 42–53.Google Scholar
Nylander, J. A. A. (2004) MrModeltest 2.0. Evolutionary Biology Centre, Uppsala University: Program distributed by the author.Google Scholar
Orange, A., James, P. W. & White, F. J. (2001) Microchemical Methods for the Identification of Lichens. London: British Lichen Society.Google Scholar
Page, R. D. M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357–358.Google ScholarPubMed
Posada, D. & Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.Google Scholar
Ronquist, F. & Huelsenbeck, J. P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.Google Scholar
Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A. & Chen, W., Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109: 6241–6246.Google Scholar
Swofford, D. L. (2001) PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.Google Scholar
Tønsberg, T. (1992) The sorediate and isidiate, corticolous, crustose lichens in Norway. Sommerfeltia 14: 1–331.Google Scholar
van den Boom, P. P. G. & Coppins, B. J. (2001) Micarea viridileprosa sp. nov., an overlooked lichen species from Western Europe. Lichenologist 33: 87–91.Google Scholar
White, T. J., Bruns, T., Lee, S. & Taylor, J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: a Guide to Methods and Applications(M. A. Innes, D. H. Gelfand, J. J. Sninsky & T. J. White, eds): 315–322. New York: Academic Press.Google Scholar
Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31: 511–516.Google Scholar