Hostname: page-component-cd9895bd7-dzt6s Total loading time: 0 Render date: 2024-12-23T03:10:37.323Z Has data issue: false hasContentIssue false
  • English
  • Français

The identity, ecology and distribution of Polypyrenula (Ascomycota: Dothideomycetes): a new member of Trypetheliaceae revealed by molecular and anatomical data

Published online by Cambridge University Press:  04 March 2020

Ricardo Miranda-González Open the ORCID record for Ricardo Miranda-González [Opens in a new window] ,
André Aptroot Open the ORCID record for André Aptroot [Opens in a new window] ,
Robert Lücking Open the ORCID record for Robert Lücking [Opens in a new window] ,
Adam Flakus ,
Alejandrina Barcenas-Peña  and
María de los Ángeles Herrera-Campos
Ricardo Miranda-González*
Affiliation:
Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Apdo. Postal 70-3627, C. P. 04510, Ciudad de México, México Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR97331-2902, USA
André Aptroot
Affiliation:
Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, Mato Grosso do Sul, Brazil
Robert Lücking
Affiliation:
Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Straße 6–8, 14195Berlin, Germany
Adam Flakus
Affiliation:
Laboratory of Lichenology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL–31–512 Kraków, Poland
Alejandrina Barcenas-Peña
Affiliation:
Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Apdo. Postal 70-3627, C. P. 04510, Ciudad de México, México Science and Education, The Field Museum, 1400 South Lake Shore Drive, Chicago, IL60605-2496, USA
María de los Ángeles Herrera-Campos
Affiliation:
Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Apdo. Postal 70-3627, C. P. 04510, Ciudad de México, México
*
Author for correspondence: Ricardo Miranda-González. E-mail: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

New collections are reported of the monospecific genus Polypyrenula, an apparently extinct and doubtfully lichenized fungus, typically classified in the Pyrenulaceae. Anatomical studies reveal that it is facultatively lichenized. The structure of its hamathecium suggests affinities with Dothideomycetes rather than Eurotiomycetes. Molecular analysis using nuLSU and mtSSU markers demonstrates for the first time its inclusion in Trypetheliaceae, outside the core genera as part of the early diverging lineages in this family. The known distribution of Polypyrenula is extended to Mexico and South America, new information on its phorophyte associations is provided, and the name Polypyrenula sexlocularis is reinstated as the correct name for this species.

Keywords

albissimaBolivialichenMexicoseasonally dry tropical forestsexlocularis
Type
Standard Papers
Information
The Lichenologist , Volume 52 , Issue 1 , January 2020 , pp. 27 - 35
Copyright
Copyright © British Lichen Society 2020

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Acharius, E (1809) Förteckning på de i Sverige växande arter af Lafvarnes familj. Kongliga Vetenskaps Academiens Nya Handlingar 30, 145–169.Google Scholar
Acharius, E (1814) Synopsis Methodica Lichenum. Lund: Svanborg et Soc.Google Scholar
Aguirre-Hudson, B (1991) A taxonomic study of the species referred to the ascomycete genus Leptorhaphis. Bulletin of the British Museum (Natural History), Botany 21, 85–192.Google Scholar
Aptroot, A (1991) A monograph of the Pyrenulaceae (excluding Anthracothecium and Pyrenula) and the Requienellaceae, with notes on the Pleomassariaceae, the Trypetheliaceae and Mycomicrothelia (lichenized and non-lichenized Ascomycetes). Bibliotheca Lichenologica 44, 1–178.Google Scholar
Aptroot, A (2012) A world key to the species of Anthracothecium and Pyrenula. Lichenologist 44, 5–53.CrossRefGoogle Scholar
Aptroot, A and Lücking, R (2016) A revisionary synopsis of the Trypetheliaceae (Ascomycota: Trypetheliales). Lichenologist 48, 763–982.CrossRefGoogle Scholar
Aptroot, A, Lücking, R, Sipman, HJM, Umaña, L and Chaves, JL (2008) Pyrenocarpous lichens with bitunicate asci: a first assessment of the lichen biodiversity inventory in Costa Rica. Bibliotheca Lichenologica 97, 1–162.Google Scholar
Aptroot, A, Cáceres, MES, Johnston, MK and Lücking, R (2016) How diverse is the lichenized fungal family Trypetheliaceae (Ascomycota: Dothideomycetes)? A quantitative prediction of global species richness. Lichenologist 48, 983–994.CrossRefGoogle Scholar
Barr, ME (1982) On the Pleomassariaceae (Pleosporales) in North America. Mycotaxon 15, 349–383.Google Scholar
Bungartz, F (2002) Introduction. In NashTH, III TH, III, Ryan, BD, Gries, C and Bungartz, F (eds), Lichen Flora of the Greater Sonoran Desert Region, Vol. I. Tempe, Arizona: Lichens Unlimited, Arizona State University, pp. 1–53.Google Scholar
Cáceres, MES, Lücking, R and Rambold, G (2007) Phorophyte specificity and environmental parameters versus stochasticity as determinants for species composition of corticolous crustose lichen communities in the Atlantic rain forest of northeastern Brazil. Mycological Progress 6, 117–136.CrossRefGoogle Scholar
Capella-Gutiérrez, S, Silla-Martínez, JM and Gabaldón, T (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25, 1972–1973.CrossRefGoogle ScholarPubMed
Clements, FE (1909) The Genera of Fungi. Minneapolis: H. W. Wilson.CrossRefGoogle Scholar
Culberson, C and Ammann, K (1979) Standardmethode zur Dünnschichtchromatographie von Flechtensubstanzen. Herzogia 5, 1–24.Google Scholar
Culberson, C and Johnson, A (1982) Substitution of methyl tert.-butyl ether for diethyl ether in the standardized thin-layer chromatographic method for lichen products. Journal of Chromatography 238, 438–487.CrossRefGoogle Scholar
DRYFLOR, Banda-R, K, Delgado-Salinas, A, Dexter, KG, Linares-Palomino, R, Oliveira-Filho, A, Prado, D, Pullan, M, Quintana, C, Riina, R, et al. (2016) Plant diversity patterns in neotropical dry forests and their conservation implications. Science 353, 1383–1387.Google ScholarPubMed
Fée, ALA (1824–1825) Essai sur les Cryptogames des écorces Exotiques Officinales. Paris: F. Didot.Google Scholar
Fée, ALA (1837) Essai sur les Cryptogames des écorces Exotiques Officinales. Deuxieme Partie. Supplément et Révision. Paris: F. Didot.Google Scholar
Gardes, M and Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2, 113–118.CrossRefGoogle ScholarPubMed
Gueidan, C, Villaseñor, CR, De Hoog, GS, Gorbushina, AA, Untereiner, WA and Lutzoni, F (2008) A rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages. Studies in Mycology 61, 111–119.CrossRefGoogle ScholarPubMed
Gueidan, C, Aptroot, A, Cáceres, MES and Binh, NQ (2016) Molecular phylogeny of the tropical lichen family Pyrenulaceae: contribution from dried herbarium specimens and FTA card samples. Mycological Progress 15, 1–21.Google Scholar
Hale, ME (1979) How to Know the Lichens. 2nd ed.Dubuque: William C. Brown Company Publishers.Google Scholar
Harris, RC (1973) The corticolous pyrenolichens of the Great Lakes region. Michigan Botanist 12, 3–68.Google Scholar
Harris, RC (1989) A sketch of the family Pyrenulaceae (Melanommatales) in eastern North America. Memoirs of the New York Botanical Garden 49, 74–107.Google Scholar
Harris, RC (1995) More Florida Lichens Including the 10c Tour of the Pyrenolichens. New York: Published by the author.Google Scholar
Hawksworth, DL (1983) Polythelis, an overlooked genus of tropical Pyrenulaceae with eu- and distoseptate ascospores. Lichenologist 15, 151–156.CrossRefGoogle Scholar
Hawksworth, DL (1985) A redisposition of the species referred to the ascomycete genus Microthelia. Bulletin of the British Museum (Natural History), Botany 14, 43–181.Google Scholar
Huelsenbeck, JP and Ronquist, F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754–755.CrossRefGoogle ScholarPubMed
Hyde, KD, Jones, EBG, Liu, J-K, Ariyawansa, H, Boehm, E, Boonmee, S, Braun, U, Chomnunti, P, Crous, PW, Dai, D-Q, et al. (2013) Families of Dothideomycetes. Fungal Diversity 63, 1–313.CrossRefGoogle Scholar
Hyde, KD, Hongsanan, S, Jeewon, R, Bhat, DJ, McKenzie, EHC, Jones, EBG, Phookamsak, R, Ariyawansa, HA, Boonmee, S, Zhao, Q, et al. (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 80, 1–270.CrossRefGoogle Scholar
Jaklitsch, WM, Gardiennet, A and Voglmayr, H (2016) Resolution of morphology-based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria. Persoonia 37, 82–105.CrossRefGoogle ScholarPubMed
Janzen, DH (1988) Management of habitat fragments in a tropical dry forest: growth. Annals of the Missouri Botanical Garden 75, 105–116.CrossRefGoogle Scholar
Katoh, K and Standley, DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30, 772–780.CrossRefGoogle ScholarPubMed
Kearse, M, Moir, R, Wilson, A, Stones-Havas, S, Cheung, M, Sturrock, S, Buxton, S, Cooper, A, Markowitz, S, Duran, C, et al. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649.CrossRefGoogle ScholarPubMed
Luangsuphabool, T, Piapukiew, J, Parnmen, S, Nelsen, MP, Lumbsch, HT and Sangvichien, E (2016) Diversity of the Trypethelium eluteriae group in Thailand (Ascomycota, Trypetheliales). Lichenologist 48, 53–60.CrossRefGoogle Scholar
Lücking, R, Nelsen, MP, Aptroot, A, Barillas de Klee, R, Bawingan, PA, Benatti, MN, Binh, NQ, Bungartz, F, Cáceres, MES, Canêz, LS, et al. (2016) A phylogenetic framework for reassessing generic concepts and species delimitation in the lichenized family Trypetheliaceae (Ascomycota: Dothideomycetes). Lichenologist 48, 739–762.CrossRefGoogle Scholar
Lücking, R, Hodkinson, BP and Leavitt, SD (2017) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – approaching one thousand genera. Bryologist 119, 361–417.CrossRefGoogle Scholar
Lumbsch, HT and Huhndorf, SM (2010) Myconet Volume 14. Part One. Outline of Ascomycota – 2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113. Fieldiana Life and Earth Sciences 1, 1–64.Google Scholar
Mangold, A, Martín, MP, Lücking, R and Lumbsch, HT (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57, 476–486.Google Scholar
Massalongo, AB (1852) Ricerche sull' Autonomia dei Licheni Crostosi. Verona: Frizerio.Google Scholar
Miller, MA, Pfeiffer, W and Schwartz, T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, Louisiana, pp. 1–8.CrossRefGoogle Scholar
Müller, J (1888) Pyrenocarpeae Féeanae in Féei Essai (1825) et Supplément (1837) editae e novo studio speciminum originalium expositae et in novam dispositionem ordinatae. Mémoires de la Société de Physique et d'Histoire Naturelle de Genève 30, 1–45.Google Scholar
Nelsen, MP, Lücking, R, Grube, M, Mbatchou, JS, Muggia, L, Rivas Plata, E and Lumbsch, HT (2009) Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta. Studies in Mycology 64, 135–144.CrossRefGoogle ScholarPubMed
Nelsen, MP, Lücking, R, Mbatchou, JS, Andrew, CJ, Spielmann, AA and Lumbsch, HT (2011) New insights into relationships of lichen-forming Dothideomycetes. Fungal Diversity 51, 155–162.CrossRefGoogle Scholar
Nelsen, MP, Lücking, R, Aptroot, A, Andrew, CJ, Cáceres, MES, Rivas Plata, E, Gueidan, C, da Silva Canêz, L, Knight, A, Ludwig, LR, et al. (2014) Elucidating phylogenetic relationships and genus-level classification within the fungal family Trypetheliaceae (Ascomycota: Dothideomycetes). Taxon 63, 974–992.CrossRefGoogle Scholar
Orange, A, James, PW and White, FJ (2010) Microchemical Methods for the Identification of Lichens, Second Edition with Additions and Corrections. London: British Lichen Society.Google Scholar
Pennington, RT, Lewis, GP and James, JA (2006) Neotropical Savannas and Seasonally Dry Forests. Plant Diversity, Biogeography, and Conservation. The Systematics Association Special Volume Series 69. Boca Raton, Florida: CRC Press.CrossRefGoogle Scholar
Portillo-Quintero, CA and Sánchez-Azofeifa, GA (2010) Extent and conservation of tropical dry forests in the Americas. Biological Conservation 143, 144–155.CrossRefGoogle Scholar
Quesada, M, Sánchez-Azofeifa, GA, Alvarez-Añorve, M, Stoner, KE, Avila-Cabadilla, L, Calvo-Alvarado, J, Castillo, A, Espírito-Santo, MM, Fagundes, M, Fernandes, GE, et al. (2009) Succession and management of tropical dry forests in the Americas: review and new perspectives. Forest Ecology and Management 258, 1014–1024.CrossRefGoogle Scholar
Rosabal, D, Burgaz, AR and Reyes, OJ (2013) Substrate preferences and phorophyte specificity of corticolous lichens on five tree species of the montane rainforest of Gran Piedra, Santiago de Cuba. Bryologist 116, 113–122.CrossRefGoogle Scholar
Sánchez-Azofeifa, GA, Quesada, M, Rodríguez, JP, Nassar, JM, Stoner, KE, Castillo, A, Garvin, T, Zent, EL, Calvo-Alvarado, JC, Kalacska, MER, et al. (2005) Research priorities for Neotropical dry forests. Biotropica 37, 477–485.Google Scholar
Schoch, CL, Seifert, KA, Huhndorf, S, Robert, V, Spouge, JL, Levesque, CA, Chen, W and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109, 6241–6246.CrossRefGoogle ScholarPubMed
Stamatakis, A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.CrossRefGoogle ScholarPubMed
Sweetwood, G, Lücking, R, Nelsen, MP and Aptroot, A (2012) Ascospore ontogeny and discharge in megalosporous Trypetheliaceae and Graphidaceae (Ascomycota: Dothideomycetes and Lecanoromycetes) suggest phylogenetic relationships and ecological constraints. Lichenologist 44, 277–296.CrossRefGoogle Scholar
Trejo, I and Dirzo, T (2000) Deforestation of seasonally dry tropical forest: a national and local analysis in Mexico. Biological Conservation 94, 133–142.CrossRefGoogle Scholar
Trevisan, V (1853) Spighe e Paglie. Padova: Dalla Tipografia Sicca.Google Scholar
Van Ee, B and Berry, PE (2010) Typification notes for Croton (Euphorbiaceae). Harvard Papers in Botany 15, 73–84.CrossRefGoogle Scholar
Vilgalys, R and Hester, M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4238–4246.CrossRefGoogle ScholarPubMed
Webster, GL (1993) A provisional synopsis of the sections of the genus Croton (Euphorbiaceae). Taxon 42, 793–823.CrossRefGoogle Scholar
Weerakoon, G, Aptroot, A, Lumbsch, HT, Wolseley, PA, Wijeyaratne, SC and Gueidan, C (2012) New molecular data on Pyrenulaceae from Sri Lanka reveal two well-supported groups within this family. Lichenologist 44, 639–647.CrossRefGoogle Scholar
White, TJ, Bruns, TD, Lee, SB and Taylor, JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis, MA, Gelfand, DH, Sninsky, JJ and White, TJ, (eds), PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, pp. 315–322.Google Scholar
Wijayawardene, NN, Crous, PW, Kirk, PM, Hawksworth, DL, Boonmee, S, Braun, U, Dai, D-Q, D'souza, MJ, Diederich, P, Dissanayake, A, et al. (2014) Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names. Fungal Diversity 69, 1–55.CrossRefGoogle ScholarPubMed
Zahlbruckner, A (1922) Catalogus Lichenum Universalis. Vol. 1. Leipzig: Bornträger.Google Scholar
Zoller, S, Scheidegger, C and Sperisen, C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31, 511–516.CrossRefGoogle Scholar
Supplementary material: Image

Miranda-González et al. supplementary material

Figure S1

Download Miranda-González et al. supplementary material(Image)
Image 2.1 MB
Supplementary material: File

Miranda-González et al. supplementary material

Table S1

Download Miranda-González et al. supplementary material(File)
File 16.9 KB