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Stability analysis of a chemotaxis–convection–diffusion coupling system with the roles of deformed free surface and surface tension

Published online by Cambridge University Press:  27 July 2021

S. Chakraborty
Affiliation:
Center for Advanced Study in Theoretical Sciences, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei10617, Taiwan, R.O.C.
T.W.-H. Sheu*
Affiliation:
Center for Advanced Study in Theoretical Sciences, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei10617, Taiwan, R.O.C. Department of Engineering Science and Ocean Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei10617, Taiwan, R.O.C.
*
Email address for correspondence: [email protected]

Abstract

We consider a three-dimensional chemotaxis–convection–diffusion coupled system with the effect of surface tension at the deformed free surface. The novelty of this research is to explore the impact of surface tension on bioconvection. Our aim is to determine the nature of the instability at the onset of bioconvection in a chemotaxis–convection–diffusion system involving surface tension by performing a detailed linear stability analysis of steady-state cell and oxygen concentration distributions. The influence of the surface tension on the accumulated chemotaxis cells at the deformed free surface is studied analytically to illustrate its effect on the stability of the system. The Froude number, ${{Fr_\tau }}$, and capillary number, ${{Ca_\tau }}$, are two additional parameters introduced here. A detailed parametric study is undertaken to investigate the roles of the critical Rayleigh number, ${{Ra_\tau }}_c$, as well as ${{Fr_\tau }}$ and ${{Ca_\tau }}$, in the chemotaxis system. Linear stability results revealed that an increasing value of ${{Ra_\tau }}$ would stabilize the chemotaxis system. At a higher value of ${{Fr_\tau }}$, the motion of the cells is faster towards the free surface, and as the surface tension force increases, less accumulated cells are found at the free surface. A cluster of the cells can be observed mostly at the trough rather than on the crest of the wave profile. While experimental results for the present model are not yet available, the results of the linear stability analysis provide useful information about the system's stability.

Type
JFM Papers
Copyright
© The Author(s), 2021. Published by Cambridge University Press

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References

REFERENCES

Avramenko, A.A. & Kuznetsov, A.V. 2010 Bio-thermal convection caused by combined effects of swimming of oxytactic bacteria and inclined temperature gradient in a shallow fluid layer. Intl J. Numer. Meth. Heat Fluid Flow 20 (2), 157173.CrossRefGoogle Scholar
Bees, M.A. 1998 Non-linear pattern generation by swimming micro-organisms. PhD thesis, University of Leeds.Google Scholar
Bestehorn, M. 2009 Fluid dynamics, pattern formation. In Encyclopedia of Complexity and System Science (ed. R.A. Meyers). Springer.CrossRefGoogle Scholar
Brenner, M.P., Levitov, L.S. & Budrene, E.O. 1998 Physical mechanisms for chemotactic pattern formation by bacteria. Biophys. J. 74 (4), 16771693.CrossRefGoogle ScholarPubMed
Chakraborty, S., Ivancic, F., Solovchuk, M. & Sheu, T.W.H. 2018 Stability and dynamics of a chemotaxis system with deformed free-surface in a shallow chamber. Phys. Fluids 30 (7), 071904.CrossRefGoogle Scholar
Chertock, A., Fellner, K., Kurganov, A., Lorz, A. & Markowich, P.A. 2012 Sinking, merging and stationary plumes in a coupled chemotaxis-fluid model: a high-resolution numerical approach. J. Fluid Mech. 694, 155190.CrossRefGoogle Scholar
Deleuze, Y., Chiang, C.Y., Thiriet, M. & Sheu, T.W.H. 2016 Numerical study of plume patterns in a chemotaxis-diffusion-convection coupling system. Comput. Fluids 126, 5870.CrossRefGoogle Scholar
Doedel, E.J. 2008 Auto07p continuation and bifurcation software for ordinary differential equations. Tech. Rep. Montreal Concordia University.Google Scholar
Duan, R., Lorz, A. & Markowich, P. 2010 Global solutions to the coupled chemotaxis-fluid equations. Commun. Part. Diff. Equ. 35, 16351673.CrossRefGoogle Scholar
Hill, N.A. & Pedley, T.J. 2005 Bioconvection. Fluid Dyn. Res. 37, 120.CrossRefGoogle Scholar
Hill, N.A., Pedley, T.J. & Kessler, J.O. 1989 Growth of bioconvection patterns in a suspension of gyrotactic micro-organisms in a layer of finite depth. J. Fluid Mech. 208, 509543.CrossRefGoogle Scholar
Hillesdon, A.J. 1994 Pattern formation in a suspension of swimming bacteria. PhD thesis, University of Leeds.Google Scholar
Hillesdon, A.J. & Pedley, T.J. 1996 Bioconvection in suspensions of oxytactic bacteria: linear theory. J. Fluid Mech. 324 (10), 223259.CrossRefGoogle Scholar
Hillesdon, A.J., Pedley, T.J. & Kessler, J.O. 1995 The development of concentration gradients in a suspension of chemotactic bacteria. Bull. Math. Biol. 57 (2), 299344.CrossRefGoogle Scholar
Ivančić, F., Sheu, T.W.H. & Solovchuk, M. 2019 The free surface effect on a chemotaxis-diffusion- convection coupling system. Comput. Meth. Appl. Mech. Engng 356, 387406.CrossRefGoogle Scholar
Keller, E.F. & Segel, L.A. 1971 Model for chemotaxis. J. Theor. Biol. 30 (2), 225234.CrossRefGoogle ScholarPubMed
Kessler, J.O., Hoelzer, M.A., Pedley, T.J. & Hill, N.A. 1994 Functional patterns of swimming bacteria. In Mechanics and Physiology of Animal Swimming (ed. L. Maddock, Q. Bone & J.M.V. Rayner), pp. 3–12. Cambridge University Press.CrossRefGoogle Scholar
Ko, W.H. & Chase, L.L. 1973 Aggregation of zoospores of Phytophthora palmivora. J. Gen. Microbiol. 78, 7982.CrossRefGoogle Scholar
Kowalczyk, R., Gamba, A. & Preziosi, L. 2004 On the stability of homogeneous solutions to some aggregation models. J. Discrete Continuous Dyn. Syst. 4 (1), 203220.Google Scholar
Kuznetsov, A.V. 2005 Investigation of the onset of thermo-bioconvection in a suspension of oxytactic microorganisms in a shallow fluid layer heated from below. Theor. Comput. Fluid Dyn. 19 (4), 287299.CrossRefGoogle Scholar
Lee, H.G. & Kim, J. 2015 Numerical investigation of falling bacterial plumes caused by bioconvection in a three-dimensional chamber. Eur. J. Mech. (B/Fluids) 52, 120130.CrossRefGoogle Scholar
Liu, J.G. & Lorz, A. 2011 A coupled chemotaxis-fluid model: global existence. Ann. Inst. Henri Poincaré 28, 643652.CrossRefGoogle Scholar
Ma, M., Gao, M., Tong, C. & Han, Y. 2016 Chemotaxis-driven pattern formation for a reaction-diffusion-chemotaxis model with volume-filling effect. Comput. Math. Appl. 72, 13201340.CrossRefGoogle Scholar
Metcalfe, A.M. & Pedley, T.J. 1998 Bacterial bioconvection: weakly nonlinear theory for pattern selection. J. Fluid Mech. 370, 249270.CrossRefGoogle Scholar
Metcalfe, A.M. & Pedley, T.J. 2001 Falling plumes in bacterial bioconvection. J. Fluid Mech. 445, 121149.CrossRefGoogle Scholar
Patlak, C.S. 1953 Random walk with persistence and external bias. Bull. Math. Biophys. 15, 311338.CrossRefGoogle Scholar
Pedley, T.J., Hill, N.A. & Kessler, J.O. 1988 The growth of bioconvection patterns in a uniform suspension of gyrotactic micro-organisms. J. Fluid Mech. 195, 223237.CrossRefGoogle Scholar
Pedley, T.J. & Kessler, J.O. 1992 Hydrodynamic phenomena in sus-pensions of swimming microorganisms. Annu. Rev. Fluid Mech. 24, 313358.CrossRefGoogle Scholar
Tuval, I., Cisneros, L., Dombrowski, C., Wolgemuth, C.W., Kessler, J.O. & Goldstein, R.E. 2005 Bacterial swimming and oxygen transport near contact lines. Proc. Natl Acad. Sci. USA 102 (7), 22772282.CrossRefGoogle ScholarPubMed
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