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Using quantile regression for fitting lactation curve in dairy cows

Published online by Cambridge University Press:  07 February 2019

Hossein Naeemipour Younesi ,
Mohammad Mahdi Shariati ,
Saeed Zerehdaran ,
Mehdi Jabbari Nooghabi  and
Peter Løvendahl
Hossein Naeemipour Younesi
Affiliation:
Department of Animal Science, Ferdowsi University of Mashhad, 91779 Mashhad, Iran Department of Animal Science, University of Birjand, 97191 Birjand, Iran
Mohammad Mahdi Shariati*
Affiliation:
Department of Animal Science, Ferdowsi University of Mashhad, 91779 Mashhad, Iran
Saeed Zerehdaran
Affiliation:
Department of Animal Science, Ferdowsi University of Mashhad, 91779 Mashhad, Iran
Mehdi Jabbari Nooghabi
Affiliation:
Department of Statistics, Ferdowsi University of Mashhad, 91779 Mashhad, Iran
Peter Løvendahl
Affiliation:
Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics, Aarhus University, Blichers Alle 20, 8830 Tjele, Denmark
*
Author for correspondence: Mohammad Mahdi Shariati, Email: [email protected]
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Abstract

The main objective of this study was to compare the performance of different ‘nonlinear quantile regression’ models evaluated at the τth quantile (0·25, 0·50, and 0·75) of milk production traits and somatic cell score (SCS) in Iranian Holstein dairy cows. Data were collected by the Animal Breeding Center of Iran from 1991 to 2011, comprising 101 051 monthly milk production traits and SCS records of 13 977 cows in 183 herds. Incomplete gamma (Wood), exponential (Wilmink), Dijkstra and polynomial (Ali & Schaeffer) functions were implemented in the quantile regression. Residual mean square, Akaike information criterion and log-likelihood from different models and quantiles indicated that in the same quantile, the best models were Wilmink for milk yield, Dijkstra for fat percentage and Ali & Schaeffer for protein percentage. Over all models the best model fit occurred at quantile 0·50 for milk yield, fat and protein percentage, whereas, for SCS the 0·25th quantile was best. The best model to describe SCS was Dijkstra at quantiles 0·25 and 0·50, and Ali & Schaeffer at quantile 0·75. Wood function had the worst performance amongst all traits. Quantile regression is specifically appropriate for SCS which has a mixed multimodal distribution.

Keywords

Lactation curvemilk production traitsquantile regressionsomatic cell score
Type
Research Article
Information
Journal of Dairy Research , Volume 86 , Issue 1 , February 2019 , pp. 19 - 24
Copyright
Copyright © Hannah Dairy Research Foundation 2019 

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