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Exchangeable and sampling-consistent distributions on rooted binary trees

Part of: Mathematical biology in general Combinatorial probability Graph theory

Published online by Cambridge University Press:  14 January 2022

Benjamin Hollering  and
Seth Sullivant
Benjamin Hollering*
Affiliation:
North Carolina State University
Seth Sullivant*
Affiliation:
North Carolina State University
*
*Postal address: North Carolina State University, Department of Mathematics, Box 8205, Raleigh, NC 27695, USA.
*Postal address: North Carolina State University, Department of Mathematics, Box 8205, Raleigh, NC 27695, USA.
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Abstract

We introduce a notion of finite sampling consistency for phylogenetic trees and show that the set of finitely sampling-consistent and exchangeable distributions on n-leaf phylogenetic trees is a polytope. We use this polytope to show that the set of all exchangeable and sampling-consistent distributions on four-leaf phylogenetic trees is exactly Aldous’ beta-splitting model, and give a description of some of the vertices for the polytope of distributions on five leaves. We also introduce a new semialgebraic set of exchangeable and sampling consistent models we call the multinomial model and use it to characterize the set of exchangeable and sampling-consistent distributions. Using this new model, we obtain a finite de Finetti-type theorem for rooted binary trees in the style of Diaconis’ theorem on finite exchangeable sequences.

Keywords

Beta-splitting modelmultinomial modelrandom trees

MSC classification

Primary: 05C05: Trees
Secondary: 60C05: Combinatorial probability 92B10: Taxonomy, cladistics, statistics
Type
Original Article
Information
Journal of Applied Probability , Volume 59 , Issue 1 , March 2022 , pp. 60 - 80
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Copyright
© The Author(s), 2022. Published by Cambridge University Press on behalf of Applied Probability Trust

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