Rainfall and temperature are unpredictable in Mediterranean environments, which results in inconsistent environmental conditions for crop growth and a critical source of uncertainty for farmers and growers. The objectives of the present study were to: (i) quantify and compare the plasticity of durum breeding lines, a modern cultivar and landraces on the basis of yield and agronomic traits and (ii) study associations between plasticity of yield and plasticity of agronomic and phenological traits. Plasticity was quantified using linear models for 11 durum breeding lines, one modern cultivar and two landraces grown in 21 diversified environments. The results showed that the effects due to environment, genotype and genotype×environment (G×E) interaction were significant, which indicates the existence of differences among genotypes for plasticity. Yield ranged from 1939 to 2419 kg/ha across environments and the range of plasticity was 0·66–1·13. The breeding lines and the modern cultivar had higher grain yields compared with the landraces at the same level of plasticity. The landraces with below-average plasticity in yield were characterized as tall in stature and late in heading and maturity, whereas the breeding lines and modern cultivar with above-average plasticity in yield were early in heading and maturity, semi-dwarf and high-yielding, which indicates the success in breeding the materials for unpredictable environmental conditions. In conclusion, yield plasticity was associated with yield improvement and high yield plasticity tends to associate with earliness, shorter plants and low grain weight.

The polyphagous onion thrips Thrips tabaci Lindeman (Thysanoptera: Thripidae) is a serious pest in many protected and field crops and has recently been found to occur in high numbers in Pisum sativum L. crops. In the present study, the abundance of T. tabaci was compared on two pea cultivars in the field. Data on sweep net catches at different sampling times during the day suggest that peak activity of the thrips is at noon. Significantly more thrips larvae and adults were caught on the early pea cultivar Cud Kelwedonu compared with the very early cultivar Pionier, particularly during and after flowering of the peas. Analysis of primary plant compounds indicated that the higher leaf nitrogen and sucrose contents in the leaves of cvar Cud Kelwedonu promote thrips population growth in pea. The preference of T. tabaci for leaves of cvar Cud Kelwedonu was confirmed in experiments in the laboratory. Thrips tended to settle, caused significantly more feeding damage and laid significantly more eggs on the leaves of Cud Kelwedonu. Knowledge on abundance, activity patterns and host use of T. tabaci in pea may contribute to optimizing cultivar selection, monitoring and timing of possible control measures in the future.

Aluminium (Al) toxicity is the major factor-limiting crop productivity in acid soils. In the present study, physiological and transcriptional responses of broad bean leaves to Al stress were investigated. Malondialdehyde (MDA) content, H2O2 content and protein carbonyls (PC) level in leaves were increased after 100 μm AlCl3 stress treatment, whereas the total protein content was decreased, compared with the plants without Al treatment. Stomatal closure in leaves of broad bean was increased after Al stress, suggesting that the photosynthesis rate might be affected by Al stress. The relative citrate secretion in leaves was decreased after Al treatment for 24 h according to the 13C-NMR analysis, indicating that citrate in leaves might be transported to the root to chelate Al3+. To investigate the molecular mechanisms of Al toxicity in leaves of broad bean, a suppression subtractive hybridization (SSH) library was constructed to identify up-regulated genes: cDNA from leaves subjected to 12, 24, 48 and 72 h of 50 and 100 μm AlCl3 stress were used as testers and cDNA from leaves subjected to 0 μm AlCl3 treatment for the same lengths of time as above were used as a driver. The SSH analysis identified 156 non-redundant putative Al stress-responsive expressed sequence tags (ESTs) out of 960 clones. The ESTs were categorized into ten functional groups, which were involved in metabolism (0·21), protein synthesis and protein fate (0·10), photosynthesis and chloroplast structure (0·09), transporter (0·08), cell wall related (0·06), signal transduction (0·05), defence, stress and cell death (0·05), energy (0·03), transcription factor (0·03) and unknown proteins (0·30). The effect of Al treatment on expression of 15 selected genes was investigated by reverse transcription polymerase chain reaction (RT–PCR), confirming induction by Al stress. The results indicated that genes involved in organic acid metabolism, transport, photosynthesis and chloroplast structure, defence, stress and cell death might play important roles under Al stress.

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a major wheat disease that can inflict yield losses of up to 70% on susceptible varieties under favourable environmental conditions. The timely identification of plant genetic resources likely to possess novel resistance to this disease would facilitate the rapid development of resistant wheat varieties. The focused identification of germplasm strategy (FIGS) approach was used to predict stripe rust resistance in a collection of wheat landraces conserved at ICARDA genebank. Long-term climate data for the collection sites, from which these accessions originated and stripe rust evaluation scores for one group of accessions were presented to three different non-linear models to explore the trait×collection site environment interactions. Patterns in the data detected by the models were used to predict stripe rust resistance in a second and different set of accessions. The results of the prediction were then tested against actual evaluation scores of the disease in the field. The study mimics the real scenario where requests are made to plant genetic resources curators to provide accessions that are likely to possess variation for specific traits such as disease resistance.

The models used were able to identify stripe rust-resistant accessions with a high degree of accuracy. Values as high as 0·75 for area under the curve and 0·45 for Kappa statistics, which quantify the agreement between the models’ predictions and the curator's disease scores, were achieved. This demonstrates a strong environmental component in the geographic distribution of resistance genes and therefore supports the theoretical basis for FIGS. It is argued that FIGS will improve the rate of gene discovery and efficiency of mining genetic resource collections for adaptive traits by reducing the number of accessions that are normally required for evaluation to identify such variation.

Annual medics and clovers have distinct properties in terms of usage as cover crops in Mediterranean orchards, but little is known of their capacity to adapt to the level of shading encountered on an orchard floor. A 2-year field experiment was conducted in South–Eastern Sicily to investigate the effects of withholding 0·50 of sunlight on the phenology and growth pattern of four medic and five clover accessions, focusing on traits known to be important for cover cropping. Shading delayed both seedling emergence and the onset of flowering (by up to 5 and 9 days, respectively), while it extended both the growth period and the overall life-cycle duration (by up to 5 and 11 days, respectively). It also induced an increase in cover crop height (from 34 to 38 cm) and crop light use (from 0·60 to 0·94 g DW/m2/MJ), but a reduction in soil coverage, above-ground dry biomass, maximum growth rate and maximum relative growth rate (by up to 13, 18, 21 and 7%, respectively), so compromising the competitiveness of cover crops against weeds. The responses to shading varied between genotypes. Medicago polymorpha ecotype S. Rosalia, Medicago rugosa ecotype Piano Lauro and ecotype Zappulla were the strongest competitors against weeds, whereas Trifolium tomentosum ecotype Bucampello was interesting in terms of its biomass yield and crop light use. The performance was unstable over seasons, so any future attempt to improve the species’ performances under shade by breeding will need to focus on reseeding capacity.

The present study found that a protein lysis buffer, used for the extraction of proteins from cells, showed efficacy in reducing the disease severity of cucumber anthracnose, which is caused by the anthracnose fungus. The lysis buffer and its individual components were examined for their function in reducing disease development of cucumber anthracnose on cucumber plants. Nonidet P-40, a nonionic detergent commonly used to isolate cell membrane complexes, was the most effective component of the lysis buffer for disease control. The treatment of cucumber plants with Nonidet P-40 at a concentration of 50 μl/l suppressed development of cucumber anthracnose, but it did not inhibit spore germination of the fungus. Cucumber plants were inoculated with the pathogen 30 min after treatment with Nonidet P-40, and a reduction in disease severity was observed. Expression of genes related to disease resistance (acidic class III chitinase, phenylalanine ammonialyase 1, peroxidase and pathogenesis-related protein 1-1a) were also examined after plants were treated with Nonidet P-40 and inoculated with the pathogen. The results indicate that Nonidet P-40 functions as a trigger for a stereotypic defence response in cucumber plants, including an increase in the expression levels of genes related to disease resistance.

The Arabidopsis gene AVP1 encodes a vacuolar H+-translocating inorganic pyrophosphatase (enzyme classification (EC) 3.6.1.1) that functions as an electronic proton pump in the vacuolar membrane and affects growth development and the stress response in plants. The current study was conducted to evaluate the molecular properties of the Arabidopsis thaliana vacuolar H+-pyrophosphatase (AVP1) gene in rice (Oryza sativa L.). Incorporation and expression of the transgene was confirmed by semi-quantitative reverse-transcription polymerase chain reaction (RT-PCR) and quantitative real-time PCR. Expression of the AVP1 gene in transgenic rice plants (TRP1 and TRP2) resulted in a significantly enhanced tolerance to 5·8 g/l NaCl under greenhouse conditions when compared with the control wild-type (WT) rice plants. Augmented AVP1 expression in the transgenic rice plants (TRP) also affected total biomass and improved ion homoeostasis through increased accumulation of Na+ ions in whole tissues when compared with control WT rice plants under high salinity conditions. The photochemical yield (Fv/Fm) values of TRP were higher than those of the WT rice plants, even though the values decreased over time in both the WT and transgenic (TRP1 to TRP8) rice plants. Furthermore, rice grain yield and biomass of the TRP were at least 15% higher based on culm and root weights, and panicle and spikelet numbers when compared with those of the WT rice plants during the 2010 and 2010 growing seasons in South Korea. Thus, these results suggest that ectopic AVP1 expression conferred tolerance and stress resistance to genetically modified transgenic crop plants by improving cellular ion homoeostasis in response to saline conditions, which enhanced rice yield and biomass under natural conditions in paddy fields.

Herbage accumulation is determined by the tissue turnover of individual plants and by the regulation patterns of the number of individuals in a plant population, which function in conjunction to enable swards to adapt to variations in growth and management conditions. Based on the hypothesis that intermittent grazing strategies change the proportion of basal and aerial tillers and, consequently, sward herbage accumulation, the objective of the current experiment was to evaluate the components of herbage accumulation in elephant grass cvar Napier (Pennisetum purpureum Schum. cvar Napier) from January 2011 to April 2012. The treatments corresponded to combinations of two post-grazing (post-grazing heights of 35 and 45 cm) and two pre-grazing conditions (0·95 and maximum canopy light interception during regrowth – LI0·95 and LIMax) and were allocated to experimental units (850 m2 paddocks) according to a 2×2 factorial arrangement in a complete randomized block design with four replications. The following response variables were evaluated: the population density of basal tillers (TPDb) and the population density of aerial tillers (TPDa), the number of aerial tillers per supporting unit (A/B+VC), growth rates of the leaf (LGR) and stem (SGR), leaf senescence rate, net leaf accumulation rate (LAR), and the contributions of basal and aerial tillers to sward growth and senescence. The swards managed with the LI0·95 target had greater TPDb than those managed with the LIMax target, but no difference was recorded between the LI pre-grazing targets for TPDa. The larger A/B+VC ratio recorded for the swards managed with the LIMax target resulted in a higher contribution of aerial tillers to the growth and senescence of swards. This growth strategy resulted in a higher SGR and lower LGR and LAR for the swards managed with the LIMax target relative to those managed with the LI0·95 target. The post-grazing height targets affected only LGR during winter and the second summer and SGR on average for the experiment, with higher values recorded for the swards managed at 35 cm. The LI pre-grazing targets played a central role in defining the compensatory mechanisms responsible for the competitive ability of the plants, which were primarily expressed in the variation of the proportion of basal and aerial tillers in the tiller population and interfered with the components of herbage accumulation and total herbage yield of the swards.

The potential of ensiled sorghum–soybean as a ruminant feed has already been demonstrated; however, alternatives for soybean should be considered because other legumes such as jack bean (JB; Canavalia ensiformis (L.) DC.) and velvet bean (VB; Mucuna pruriens (L.) DC) might produce better yields under tropical conditions. First, the possibility for a qualitative conservation of these legumes in combination with sorghum was studied using lab-scale silages. Furthermore, the potential of additional molasses as a source of water-soluble carbohydrates (WSC) and a microbial inoculant (BIOPRANAL) to improve silage quality were assessed. As sorghum or legume tannins may influence the silage nutritive value, their importance was assessed through the addition of polyethylene glycol (PEG), which reduces tannin activity. Therefore, 25 treatments per legume–sorghum combination were created according to a central composite design. An acceptable silage quality was reached when at least half of the fresh biomass consisted of sorghum in combination with at least 15 g of additional WSC/kg fresh material. The nutritive value of mixed silages as well as pure sorghum silage in combination with dry jack beans was determined through in vitro digestibility in the rumen and small intestine. Polyethylene glycol increased the in vitro production of short-chain fatty acids, ammonia (NH3) concentrations and effective rumen dry matter and crude protein degradability for both mixed silages, indicating that tannins reduced rumen degradability. The latter action could be positive as the amount of digestible bypass protein increased when no PEG was added in the silo. Propionate and valerate proportions were increased through PEG addition to sorghum–JB and sorghum–VB silages, respectively, suggesting that the nature of the tannins differ between these legumes.

Although the effect of saponins or saponin-containing plants on rumen microorganisms and rumen fermentation has been intensively investigated, this issue still requires special attention. Many of the phenomena occurring in the rumen related to dietary saponin supplementation are still not fully understood. Saponaria officinalis is a triterpenoid saponin-containing plant; thus, the aim of the present study was to evaluate the effect of S. officinalis L. powdered root, methanolic extract of the S. officinalis root (SOR) and the effect of the separated fractions (polysaccharides, saponins and phenolics) of S. officinalis on rumen methanogenesis, microbial population and rumen fermentation characteristics in an in vitro batch culture fermentation system. The powdered root (raw plant material) and S. officinalis extract (SOE) decreased in vitro methane production and consequently reduced the microbial population in a dose-dependent manner. The inhibition of methanogenesis was accompanied by changes in the volatile fatty acids profile. In vitro dry matter digestibility was not affected by any of the secondary compounds applied. The highest applied doses of SOE caused a higher reduction in methanogenesis (33·5 v. 14·4%) than the highest doses of powdered root form. Such results suggest that the basic components of the SOR could interact with phytochemicals or that the phytochemicals became physically less available for microbiota, resulting in a decreased antimethanogenic activity of the powdered root v. the extract. Among all the fractions selected, the saponin fraction exerted the greatest impact on ruminal fermentation. In conclusion, saponins decreased methane production by 29% in comparison with the control. This decrease was related to the reduction in protozoa and methanogen counts. It is proposed that S. officinalis has the potential to inhibit rumen methanogenesis without affecting rumen fermentation adversely.

The current situation of volatile milk prices and rising costs of, e.g. grain and labour, suggests that it is worth studying productivity and efficiency in dairy farming. The objective of the current whole-system study, carried out in lowland Central Switzerland from 2007 to 2010, was to compare the performance, efficiency, land productivity and profitability of indoor-feeding (IF) dairy production with that of pasture-based feeding (PF) dairy production. An IF herd consisting of 11 Holstein–Friesian (HF) and 13 Brown Swiss (BS) cows was kept in a free-stall barn and fed a part-mixed ration (PMR) of maize silage, grass silage and protein concentrate. The cows were allocated 15·8 ha of agricultural land (AL). In the PMR, an average per lactation of 443 kg protein concentrate and 651 kg compound feed was fed by a concentrate dispenser according to the requirements of each cow. The PF herd comprised 14 Swiss Fleckvieh (SF) and 14 BS cows, which were kept in a free-stall barn throughout the winter; barn-ventilated hay was offered ad libitum during the lactation period. This herd was allocated 15·7 ha of AL. After calving in spring, the PF cows grazed on semi-continuous pastures; they consumed an average of 285 kg of concentrate per lactation. The IF cows of the BS breed produced significantly more energy-corrected milk (ECM) per standard lactation compared with PF cows (8750 v. 5610 kg), more milk fat (350 v. 213 kg) and more milk protein (306 v. 203 kg). However, the milk of PF cows had higher levels of conjugated linoleic acid (CLA) (1·9 v. 0·6 g/100 g fat) and ω−3 fatty acids (1·7 v. 0·9 g/100 g fat) than the milk of the IF cows. The calving interval (378 v. 405 days) and the empty time (87 v. 118 days) of the BS breed were significantly shorter in the PF in comparison with that of the IF production system. The IF herd yielded significantly higher ECM/ha AL and year (12 716 v. 10 307 kg), and showed a higher feed efficiency (1·3 v. 1·1 kg ECM/kg of total dry matter intake (DMI)). The productivity per hour was roughly similar in the two systems (IF: 76 v. PF: 73 kg milk/h). The PF system resulted in higher labour income compared with the IF system (20·7 v. 13·4 €/h), but the difference was not significant. In conclusion, land productivity and efficiency were higher with the IF herd than the PF herd due to the higher energy intake per kg feed. However, within the given conditions, the more interesting case, economically, might be the reduced costs and improved milk quality of the PF system rather than the increased milk yield of the IF cows.