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A novel 28-bp indel in IGF1R gene associated with growth traits across four Chinese cattle breeds

Published online by Cambridge University Press:  01 March 2022

Jia Tang
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China
Yilei Ma
Affiliation:
Shaanxi Agricultural and Animal Husbandry Good Seed Farm, Fufeng, Shaanxi722203, China
Yu Yang
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China
Xiaojun Jiang
Affiliation:
Shaanxi Agricultural and Animal Husbandry Good Seed Farm, Fufeng, Shaanxi722203, China
Longping Li
Affiliation:
College of Life Science, Yulin University, Yulin, Shaanxi719000, China
Xianyong Lan
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China
Enliang Song
Affiliation:
Institute of Animal Husbandry and Veterinary, Shandong Academy of Agricultural Sciences, Jinan, Shandong250100, China
Chuzhao Lei
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China
Xin Wang*
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China
Hong Chen*
Affiliation:
Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China College of Life Science, Yulin University, Yulin, Shaanxi719000, China
*
Author for correspondence: Xin Wang, E-mail: [email protected]; Hong Chen, E-mail: [email protected]
Author for correspondence: Xin Wang, E-mail: [email protected]; Hong Chen, E-mail: [email protected]

Abstract

Insulin-like growth factor 1 receptor (IGF1R) is a cell surface receptor, belonging to the tyrosine kinase receptor superfamily. IGF1R plays a role not only in normal cell development but also in malignant transformation, which has become a candidate therapeutic target for the treatment of human cancer. This study aimed to explore insertions and deletions (indels) in IGF1R gene and investigate their association with growth traits in four Chinese cattle breeds (Xianan cattle, Jinnan cattle, Qinchuan cattle and Nanyang cattle). The current paper identified a 28-bp indel by polymerase chain reaction within IGF1R gene. The analysis showed that there was a significant correlation between the locus and the hucklebone width of Nanyang cattle in four periods, in which it was highly correlated at 6, 12 and 18 months. At the age of 6 months, it was also significantly correlated with body height, body weight and body length. Association analysis showed that the locus in Jinnan cattle was extremely significantly correlated with body slanting length and body weight, and significantly correlated with chest circumference. There was no significant correlation between this locus and growth traits of Xianan cattle and Qinchuan cattle. The detected indel in the IGF1R gene was significantly associated with growth traits in Jinnan and Nanyang cattle, and could be used as a molecular marker for growth trait selection.

Type
Animal Research Paper
Copyright
Copyright © The Author(s), 2022. Published by Cambridge University Press

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Footnotes

*

These authors contributed equally to this work

References

Baker, J, Liu, JP, Robertson, EJ and Efstratiadis, A (1993) Role of insulin-like growth factors in embryonic and postnatal growth. Cell 75, 7382.CrossRefGoogle ScholarPubMed
Bi, Y, Feng, B, Wang, Z, Zhu, H, Qu, L, Lan, X, Pan, C and Song, X (2020) Myostatin (MSTN) gene indel variation and its associations with body traits in Shaanbei white cashmere goat. Animals: An Open Access Journal from MDPI 10, 168.CrossRefGoogle ScholarPubMed
Cai, CC, Xu, JW, Huang, YZ, Lan, XY, Lei, CZ, Yang, XY, Xie, JL, Li, YH and Chen, H (2019) Differential expression of ACTL8 gene and association study of its variations with growth traits in Chinese cattle. Animals: An Open Access Journal from MDPI 9, 1068.CrossRefGoogle ScholarPubMed
Cardoso, S and Moreira, PI (2021) IGF1R deficiency modulates brain signaling pathways and disturbs mitochondria and redox homeostasis. Biomedicines 9, 158.CrossRefGoogle ScholarPubMed
DeChiara, TM, Efstratiadis, A and Robertsen, EJ (1990) A growth-deficiency phenotype in heterozygous mice carrying an insulin-like growth factor II gene disrupted by targeting. Nature 345, 7880.CrossRefGoogle ScholarPubMed
Elmagd, MA, Saleh, AA, Nafeaa, AA, Elkomy, SM and Afifi, MA (2017) Novel polymorphisms of the IGF1R gene and their association with average daily gain in Egyptian buffalo (Bubalus bubalis). Journal of Zhejiang University Science B 18, 10641074.Google Scholar
Fottner, C, Minnemann, T, Kalmbach, S and Weber, MM (2006) Overexpression of the insulin-like growth factor I receptor in human pheochromocytomas. Journal of Molecular Endocrinology 36, 279287.CrossRefGoogle ScholarPubMed
Gao, J, Song, X, Wu, H, Tang, Q and Zhang, B (2020) Detection of rs665862918 (15-bp indel) of the HIAT1 gene and its strong genetic effects on growth traits in goats. Animals 10, 358.CrossRefGoogle ScholarPubMed
Gluckman, P, Klempt, N, Jian, G, Mallard, C and Nikolics, K (1992) A role for IGF-I in the rescue of CNS neurons following hypoxic-ischemic injury. Biochemical and Biophysical Research Communications 182, 593599.CrossRefGoogle ScholarPubMed
Harrington, EA, Bennett, MR, Fanidi, A and Evan, G (1994) c-Myc-induced apoptosis in fibroblasts is inhibited by specific cytokines. EMBO Journal 13, 32863295.CrossRefGoogle ScholarPubMed
Isaksson, OGP, Lindahl, A, Nilsson, A and Isgaard, J (1987) Mechanism of the stimulatory effect of growth hormone on longitudinal bone growth. Endocrine Reviews 8, 426438.CrossRefGoogle ScholarPubMed
Lei, M, Peng, X, Min, Z, Luo, C and Zhang, X (2008) Polymorphisms of the IGF1R gene and their genetic effects on chicken early growth and carcass traits. BMC Genetics 9, 19.CrossRefGoogle ScholarPubMed
LeRoith, D, Werner, H, BeitnerJohnson, D and Roberts, CT (1995) Molecular and cellular aspects of the insulin-like growth factor I receptor. Endocrine Reviews 16, 143163.CrossRefGoogle ScholarPubMed
Liu, JP, Baker, J, Perkins, AS, Robertson, EJ and Efstratiadis, A (1993) Mice carrying null mutations of the genes encoding insulin-like growth factor I (Igf-1) and type 1 IGF receptor (Igf1r). Cell 75, 5972.Google Scholar
Ma, YL, Wen, YF, Cao, XK, Cheng, J and Chen, H (2019) Copy number variation (CNV) in the IGF1R gene across four cattle breeds and its association with economic traits. Archives Animal Breeding 62, 171179.CrossRefGoogle ScholarPubMed
Nei, M and Roychoudhury, AK (1974) Sampling variances of heterozygosity and genetic distance. Genetics 76, 379390.CrossRefGoogle ScholarPubMed
Ren, T, Yang, Y, Lin, W, Li, W and Zhang, X (2020) A 31-bp indel in the 5′ UTR region of GNB1L is significantly associated with chicken body weight and carcass traits. BMC Genetics 21, 91.CrossRefGoogle ScholarPubMed
Rodriguez-Tarduchy, G, Collins, M, García, I and LópezRivas, A (1992) Insulin-like growth factor-I inhibits apoptosis in IL-3-dependent hemopoietic cells. The Journal of Immunology 149, 535540.Google ScholarPubMed
Sakurai, D, Zhao, J, Deng, Y, Kelly, JA, Brown, EE, Harley, JB, Bae, SC, Alarcon-Riqueime, ME, Edberg, JC, Kimberly, RP, Ramsey-Goldman, R, Petri, MA, Reveille, JD, Vila, LM, Alarcon, GS, Kaufman, KM, Vyse, TJ, Jacob, CO, Gaffney, PM, Sivils, KM, James, JA, Kamen, DL, Gilkeson, GS, Niewold, TB, Merrill, JT, Scofield, RH, Criswell, LA, Stevens, AM, Boackle, SA, Kim, JH, Choi, J, Pons-Estel, BA, Freedman, BI, Anaya, JM, Martin, J, Yu, CY, Chang, DM, Song, YW, Langefeld, CD, Chen, WL, Grossman, JM, Cantor, RM, Hahn, BH and Tsao, BP (2013) Preferential binding to elk-1 by sle-associated IL10 risk allele upregulates IL10 expression. PLoS Genetics 9, e1003870.CrossRefGoogle ScholarPubMed
Sell, C, Dumenil, G, Deveaud, C, Miura, M, Coppola, D, Deangelis, T, Rubin, R, Efstratiadis, A and Baserga, R (1994) Effect of a null mutation of the insulin-like growth factor I receptor gene on growth and transformation of mouse embryo fibroblasts. Molecular and Cellular Biology 14, 36043612.Google Scholar
Sheng, X, Bao, Y, Zhang, JS, Li, M and Li, CT (2018) Research progress on indel genetic marker in forensic science. Fa yi xue za zhi 34, 420427.Google ScholarPubMed
Sjödin, P, Bataillon, T and Schierup, MH (2010) Insertion and deletion processes in recent human history. PLoS ONE 5, e8650.CrossRefGoogle ScholarPubMed
Szewczuk, M, Zych, S, Wójcik, J and Czerniawska-Pitkowska, E (2013) Association of two SNPs in the coding region of the insulin-like growth factor 1 receptor (IGF1R) gene with growth-related traits in Angus cattle. Journal of Applied Genetics 54, 305308.CrossRefGoogle ScholarPubMed
Valentinis, PB (1997) The IGF-I receptor in cell growth, transformation and apoptosis. Biochimica et Biophysica Acta 1332, 105126.Google Scholar
Wang, C, Wang, S, Liu, S, Cheng, Y and Hao, L (2020) Synonymous mutations of porcine IGF1R extracellular domain affect differentiation and mineralization in MC3T3-E1 cells. Frontiers in Cell and Developmental Biology 8, 623.CrossRefGoogle ScholarPubMed
Zhao, H, Shuai, H, Wang, S, Zhu, Y and Sun, X (2017) Two new insertion/deletion variants of the PITX2 gene and their effects on growth traits in sheep. Animal Biotechnology 29, 17.Google ScholarPubMed