Most current biological problems in agriculture occur at the higher levels of organization: populations, communities and ecosystems. These are the levels addressed by the science of ecology rather than other biological sciences. Therefore ecology will by necessity become the central science of agriculture. Agricultural production will be seen as a form of applied ecology or ecological engineering. This change in perspective has major implications for agricultural research. It brings the discussion of the assumptions of a research programme into the open and forces researchers to prioritize among potentially conflicting objectives. It sees agricultural strategies in terms of trade-offs, rather than improvements, and it suggests that agricultural research needs to be more bold and ambitious if it is to solve the most important problems facing us in the new century.