Hostname: page-component-586b7cd67f-t8hqh Total loading time: 0 Render date: 2024-11-22T12:36:01.406Z Has data issue: false hasContentIssue false

Automated Fitting of X-Ray Powder Diffraction Patterns from Interstratified Phyllosilicates

Published online by Cambridge University Press:  01 January 2024

Hongji Yuan*
Affiliation:
Department of Geological Sciences, Indiana University, Bloomington, IN 47405 USA
David L. Bish
Affiliation:
Department of Geological Sciences, Indiana University, Bloomington, IN 47405 USA
*
* E-mail address of corresponding author: [email protected]
Rights & Permissions [Opens in a new window]

Abstract

Core share and HTML view are not available for this content. However, as you have access to this content, a full PDF is available via the ‘Save PDF’ action button.

NEWMOD®, developed by R.C. Reynolds, Jr., has been an important tool for evaluating quantitatively X-ray diffraction (XRD) patterns from interstratified clay minerals for more than 20 years. However, a significant drawback to the NEWMOD® approach is that analyses are done by forward simulation, making results sensitive to user input and starting-model assumptions. In the present study, a reverse-fitting procedure was implemented in a new program, FITMOD, which automatically minimizes the differences between experimental and simulated XRD patterns. The differences are minimized by varying model parameters (such as Reichweite, crystal-size distribution, cation content, type of disorder, etc.) using the downhill simplex method. The downhill simplex method is a non-linear optimization technique for determining minima of functions. This method does not require calculation of the derivatives of the functions being minimized, an important consideration with many of the parameters in NEWMOD- type simulations. Instead, the downhill simplex method calculates pseudo-derivatives by evaluating sufficient points to define a derivative for each independent variable. The performance of FITMOD was evaluated by fitting a series of synthetic XRD patterns generated by NEWMOD+, yielding agreement factors, Rwp, of <0.3%. As long as the correct interstratified system was specified (e.g. illite-smectite), excellent fits were obtained irrespective of the starting parameters for the simulations. FITMOD was also tested using experimental XRD patterns, which gave very good fits, in agreement with previously published results. The optimization routine yields good fits for both synthetic and experimental XRD profiles in a reasonable time, with the possibility of varying all important structural parameters. FITMOD automatically provides optimum fits to experimental XRD data without operator bias, and fitting efficiency and accuracy were, therefore, significantly improved.

Type
Article
Copyright
Copyright © Clay Minerals Society 2010

References

Bergmann, J., Kleeberg, R., and Taut, T., 1994 A new structure refinement and quantitative phase analysis method based on predetermined true peak profiles Zeitschrift für Kristallographie, Supplement issue No. 8, European Crystallogrpahy Meeting 15 580.Google Scholar
Berkgaut, V., Singer, A., and Stahr, K., 1994 Palagonite reconsidered — paracrystalline illite-smectites from regoliths on basic pyroclastics Clays and Clay Minerals 42 582592.CrossRefGoogle Scholar
Bethke, C.M., and Reynolds, R.C., 1986 Recursive method for determining frequency factors in interstratified clay diffraction calculations Clay and Clay Minerals 34 224226.CrossRefGoogle Scholar
Bish, D.L., 1989 Evaluation of past and future alterations in tuff at Yucca Mountain, Nevada, based on the clay mineralogy of drill cores USW G-1, G-2, and G-3 Los Alamos National Laboratory Report 1922.CrossRefGoogle Scholar
Bish, D.L., and Aronson, J.L., 1993 Paleogeothermal and paleohydrologic conditions in silicic tuff from Yucca Mountain, Nevada Clays and Clay Minerals 41 148161.CrossRefGoogle Scholar
Casas-Cabanas, M., Palacin, M.R., and Rodriguez-Carvajal, J., 2005 Microstructural analysis of nickel hydroxide: Anisotropic size versus stacking faults Powder Diffraction 20 334344.CrossRefGoogle Scholar
Cases, J.M., Berend, I., Besson, G., Francois, M., Uriot, J.P., Thomas, F., and Poirier, J.E., 1992 Mechanism of adsorption and desorption of water-vapor by homoionic montmorillonite.1. The sodium-exchanged form Langmuir 8 27302739.CrossRefGoogle Scholar
Coelho, A.A., 2003 TOPAS Germany User Manual. Version 3.1. Bruker AXS GmbH, Karlsruhe.Google Scholar
Cuadros, J., and Dudek, T., 2006 FTIR investigation of the evolution of the octahedral sheet of kaolinite-smectite with progressive kaolinization Clays and Clay Minerals 54 111.CrossRefGoogle Scholar
David, W.I.F., 2004 Powder diffraction: Least-squares and beyond Journal of Research of the National Institute of Standards and Technology 109 107123.CrossRefGoogle ScholarPubMed
de la Fuente, S., Cuadros, J., and Linares, J., 2002 Early stages of volcanic tuff alteration in hydrothermal experiments: Formation of mixed-layer illite-smectite Clays and Clay Minerals 50 578590.CrossRefGoogle Scholar
Drits, V.A., and Sakharov, B.A., 1976 X-ray Analysis of Mixed-layer Clay Minerals Moscow Nauka (in Russian).Google Scholar
Drits, V.A., and Tchoubar, C., 1990 X-ray Diffraction by Disordered Lamellar Structures Berlin, Heidelberg Springer Verlag.CrossRefGoogle Scholar
Drits, V.A., Sakharov, B.A., Lindgreen, H., and Salyn, A., 1997 Sequential structure transformation of illite-smectite-vermiculite during diagenesis of Upper Jurassic shales from the North Sea and Denmark Clay Minerals 32 351371.CrossRefGoogle Scholar
Drits, V., Srodon, J., and Eberl, D.D., 1997 XRD measurement of mean crystalline thickness of illite and illite/smectite: Reappraisal of the Kubler index and the Scherrer equation Clays and Clay Minerals 45 461475.CrossRefGoogle Scholar
Drits, V.A., Sakharov, B.A., Dainyak, L.G., Salyn, A.L., and Lindgreen, H., 2002 Structural and chemical heterogeneity of illite-smectites from Upper Jurassic mudstones of East Greenland related to volcanic and weathered parent rocks American Mineralogist 87 15901606.CrossRefGoogle Scholar
Drits, V.A., Sakharov, B.A., Salyn, A.L., and Lindgreen, H., 2005 Determination of the content and distribution of xed ammonium in illite-smectite using a modied X-ray diffraction technique: Application to oil source rocks of western Greenland American Mineralogist 90 7184.CrossRefGoogle Scholar
Dudek, T., Cuadros, J., and Fiore, S., 2006 Interstratified kaolinite-smectite: Nature of the layers and mechanism of smectite kaolinization American Mineralogist 91 159170.CrossRefGoogle Scholar
Eberl, D.D., Nuesch, R., Sucha, V., and Tsipursky, S., 1998 Measurement of fundamental illite particle thicknesses by X-ray diffraction using PVP-10 intercalation Clays and Clay Minerals 46 8997.CrossRefGoogle Scholar
Ferrage, E., Lanson, B., Sakharov, B.A., and Drits, V.A., 2005 Investigation of smectite hydration properties by modeling experimental X-ray diffraction patterns: Part I. Montmorillonite hydration properties American Mineralogist 90 13581374.CrossRefGoogle Scholar
Ferrage, E., Lanson, B., Malikova, N., Plancon, A., Sakharov, B.A., and Drits, V.A., 2005 New insights on the distribution of interlayer water in bi-hydrated smectite from X-ray diffraction profile modeling of 00l reflections Chemistry of Materials 17 34993512.CrossRefGoogle Scholar
Gruner, J.W., 1934 The structure of vermiculites and their collapse by dehydration American Mineralogist 19 557575.Google Scholar
Gualtieri, A.F., Ferrari, S., Leoni, M., Grathoff, G., Hugo, R., Shatnawi, M., Paglia, G., and Billinge, S., 2008 Structural characterization of the clay mineral illite-1M Journal of Applied Crystallography 41 402415.CrossRefGoogle Scholar
Guinier, A., 1964 Theorie et technique de la radiocristallographie. Diffraction par les Reseaux Cristallins Imparfaits Paris Dunod 490636.Google Scholar
Hendricks, S.B., and Teller, E., 1942 X-ray interference in partially ordered layer lattices Journal of Chemical Physics 10 147167.CrossRefGoogle Scholar
Hillier, S., and Velde, B., 1992 Chlorite interstratified with a 7-A mineral — An example from offshore Norway and possible implications for the interpretation of the composition of diagenetic chlorites Clay Minerals 27 475486.CrossRefGoogle Scholar
Howard, S.A., Preston, K.D., Bish, D.L., and Post, J.E., 1989 Profile fitting of powder diffraction patterns Modern Powder Diffraction Washington, D.C. Reviews in Mineralogy, 20, Mineralogical Society of America 217275.CrossRefGoogle Scholar
Howard, S.A., and Snyder, R.L., 1983 An evaluation of some profile models and the optimization procedures used in profile fitting Advances in X-ray Analysis 26 7381.CrossRefGoogle Scholar
Jaboyedoff, M., and Cosca, M.A., 1999 Dating incipient metamorphism using Ar40/Ar39 geochronology and XRD modeling: a case study from the Swiss Alps Contributions to Mineralogy and Petrology 135 93113.CrossRefGoogle Scholar
Jaboyedoff, M., and Thelin, P., 1996 New data on low-grade metamorphism in the Brianconnais domain of the Prealps, Western Switzerland European Journal of Mineralogy 8 577592.CrossRefGoogle Scholar
Koyama, K., and Takeuchi, Y., 1977 Clinoptilolite — distribution of potassium atoms and its role in thermal stability Zeitschrift fur Kristallographie 145 216239.Google Scholar
Leoni, M., Gualtieri, A.F., and Roveri, N., 2004 Simultaneous refinement of structure and microstructure of layered materials Journal of Applied Crystallography 37 166173.CrossRefGoogle Scholar
MacEwan, D.M.D., 1958 Fourier transform methods for studying X-ray scattering from lamellar systems. II. The calculation of X-ray diffraction effects from various type of interstratification Kolloidzeitschrift 156 6167.Google Scholar
MacEwan, D.M.C., Ruiz-Amil, A., Brown, G., Brindley, G.W., and Brown, G., 1961 Interstratified clay minerals The X-ray Identification and Crystal Structures of Clay Minerals London The Mineralogical Society 393.Google Scholar
Marquardt, D.W., 1963 An algorithm for least-squares estimation of nonlinear parameters Journal of the Society for Industrial and Applied Mathematics 11 431441.CrossRefGoogle Scholar
Mering, J., 1949 X-ray diffraction in disordered layer structures Acta Crystallographica 2 371377.Google Scholar
Moore, D.M., and Reynolds, R.C. Jr., 1997 X-ray Diffraction and the Identification and Analysis of Clay Minerals New York Oxford University Press.Google Scholar
Nelder, J.A., and Mead, R., 1965 A simplex method for function minimization Computer Journal 7 308313.CrossRefGoogle Scholar
Pevear, D.R., Schuette, J.F., Reynolds, R.C. Jr. and Walker, J.R., 1993 Inverting the NEWMOD X-ray diffraction forward model for clay minerals using genetic algorithms Computer Applications to X-ray Powder Diffraction Analysis of Clay Minerals USA CMS Workshop Lectures, Vol. 5, The Clay Minerals Society, Boulder, Colorado 2041.Google Scholar
Plancon, A., 1981 Diffraction by layer structures containing different kinds of layers and stacking-faults Journal of Applied Crystallography 14 300304.CrossRefGoogle Scholar
Plancon, A., 2002 New modeling of X-ray diffraction by disordered lamellar structures, such as phyllosilicates American Mineralogist 87 16721677.CrossRefGoogle Scholar
Press, W.H., Teukolsky, S.A., Vetterling, W.T., and Flannery, B.P., 1992 Numerical recipes in C: The Art of Scientific Computing 2nd edition Cambridge, UK. Cambridge University Press.Google Scholar
Proffen, T., and Neder, R.B., 1997 DISCUS: A program for diffuse scattering and defect-structure simulation Journal ofApplied Crystallography 30 171175.CrossRefGoogle Scholar
Renac, C., and Meunier, A., 1995 Reconstruction of palaeothermal conditions in a passive margin using illitesmectite mixed-layer series (Ba1 Scientific Deep Drill-Hole, Ardeche, France) Clay Minerals 30 107118.CrossRefGoogle Scholar
Reynolds, R.C., 1967 Interstratified clay systems: Calculation of the total one-dimensional diffraction function American Mineralogist 52 661672.Google Scholar
Reynolds, R.C., Brindley, G.W., and Brown, G., 1980 Interstratified clay minerals Crystal Structures of Clay Minerals and their X-ray Identification London Mineralogical Society 249303.CrossRefGoogle Scholar
Reynolds, R.C. Jr., 1985 NEWMOD a Computer Program for the Calculation of Basal X-Ray Diffraction Intensities of Mixed-Layered Clays New Hampshire R.C. Reynolds, Hanover.Google Scholar
Reynolds, R.C. Jr., Bish, D.L., and Post, J.E., 1989 Diffraction by small and disordered crystals Modern Powder Diffraction Washington, D.C Reviews in Mineralogy, 20, Mineralogical Society of America 143182.Google Scholar
Schreyer, W., Medenbach, O., Abraham, K., Gebert, W., and Muller, W.F., 1982 Kulkeite, a new metamorphic phyllosilicate mineral — ordered 1–1 chlorite talc mixed-layer Contributions to Mineralogy and Petrology 80 103109.CrossRefGoogle Scholar
Shannon, R.D., 1976 Revised effective ionic-radii and systematic studies of interatomic distances in halides and chalcogenides Acta Crystallographica Section A 32 751767.CrossRefGoogle Scholar
Simoncic, P., and Armbruster, T., 2004 Peculiarity and defect structure of the natural and synthetic zeolite mordenite: a single-crystal X-ray study American Mineralogist 89 421431.CrossRefGoogle Scholar
Srodon, J., Elsass, F., McHardy, W.J., and Morgan, D.J., 1992 Chemistry of illite-smectite inferred from TEM measurements of fundamental particles Clay Minerals 27 137158.CrossRefGoogle Scholar
Srodon, J., Eberl, D.D., and Drits, V.A., 2000 Evolution of fundamental-particle size during illitization of smectite and implications for reaction mechanism Clays and Clay Minerals 48 446458.CrossRefGoogle Scholar
Toby, B.H., 2006 R factors in Rietveld analysis: How good is good enough? Powder Diffraction 21 6770.CrossRefGoogle Scholar
Treacy, M.M.J., Newsam, J.M., and Deem, M.W., 1991 A general recursion method for calculating diffracted intensities from crystals containing planar faults Proceedings of the Royal Society of London, A: Mathematical and Physical Sciences 433 499520.Google Scholar
Ufer, K., Kleeberg, R., Bergmann, J., Curtius, H., and Dohrmann, R., 2008 Refining real structure parameters of disordered layer structures within the Rietveld method Zeitschrift fur Kristallographie 151158.CrossRefGoogle Scholar
Walker, J.R., Reynolds, R.C. Jr. and Walker, J.R., 1993 An introduction to computer modeling of X-ray diffraction patterns of clay minerals: A guided tour of NEWMOD Computer Applications to X-ray Powder Diffraction Analysis of Clay Minerals USA CMS Workshop Lectures series, vol. 5, The Clay Minerals Society, Boulder, Colorado 118.Google Scholar
Wilson, P.N., Parry, W.T., and Nash, W.P., 1992 Characterization of hydrothermal tobelitic veins from black shale, Oquirrh Mountains, Utah Clays and Clay Minerals 40 405420.CrossRefGoogle Scholar
Yuan, H.J., and Bish, D.L., 2010 NEWMOD+, a new version of the NEWMOD program for interpreting X-ray powder diffraction patterns from interstratified clay minerals Clays and Clay Minerals 58 318326.CrossRefGoogle Scholar
Young, R.A., and Young, R.A., 1993 Introduction to the Rietveld method The Rietveld Method Oxford, UK International Union of Crystallography, Oxford University Press. 138.CrossRefGoogle Scholar