Dairy cows in confinement and pasture-based feeding systems were compared across 4 spring-calving and 3 fall-calving replicates for differences in reproduction, mastitis, and body condition scores. Each feeding system and replicate included both Jersey and Holstein cows. Cows in confinement were fed a total mixed ration with maize silage as the base forage along with a variety of concentrates. Cows on pasture were routinely supplemented with concentrates and were provided baled grass and/or legume silage when pastures were limiting. Breeding periods were for 75 days in spring or fall. Reproductive performance did not differ significantly due to feeding system but Jerseys had higher conception rates (59.6 vs. 49.5%) and overall pregnancy rates (78.0 vs. 57.9%) than Holsteins. Cows in confinement had significantly higher rates of clinical mastitis and culling for mastitis than cows on pasture. Within both feeding systems, Jerseys had less mastitis than Holsteins. Average body condition scores were higher for confinement cows than pasture cows except for one replicate. Jerseys maintained higher average body condition scores than Holsteins in all but one replicate. In summary, pastured cows produced less milk and had less mastitis but lower body condition scores than confinement cows. Holsteins produced more milk but were less likely to rebreed, had more mastitis, higher culling rates, and maintained lower body condition scores than Jerseys.