Hostname: page-component-586b7cd67f-g8jcs Total loading time: 0 Render date: 2024-11-23T03:52:23.013Z Has data issue: false hasContentIssue false
  • English
  • Français

DNA hybridization arrays: a powerful technology for nutritional and obesity research

Published online by Cambridge University Press:  09 March 2007

M. J. Moreno-Aliaga ,
A. Marti ,
J. García-Foncillas  and
J. Alfredo Martínez
M. J. Moreno-Aliaga
Affiliation:
Department of Physiology and NutritionUniversity of Navarra31080 Pamplona, Spain
A. Marti
Affiliation:
Department of Physiology and NutritionUniversity of Navarra31080 Pamplona, Spain
J. García-Foncillas
Affiliation:
Cellular Therapy UnitUniversity of Navarra31080 Pamplona, Spain
J. Alfredo Martínez
Affiliation:
Department of Physiology and NutritionUniversity of Navarra31080 Pamplona, Spain
Rights & Permissions [Opens in a new window]

Abstract

An abstract is not available for this content so a preview has been provided. As you have access to this content, a full PDF is available via the ‘Save PDF’ action button.
Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'
Type
Commentary
Information
British Journal of Nutrition , Volume 86 , Issue 2 , August 2001 , pp. 119 - 122
Copyright
Copyright © The Nutrition Society 2001

References

Aitman, TJ, Glazier, AM, Wallace, CA, Cooper, LD, Norsworthy, PJ, Wahid, FN, Al-Majali, KM, Trembling, PM, Mann, CJ, Shoulders, CC, Graf, D, St Lezin, E, Kurtz, TW, Kren, V, Pravenec, M, Ibrahimi, A, Abumrad, NA, Stanton, LW & Scott, J (1999) Identification of Cd36 (Fat) as an insulin-resistance gene causing defective fatty acid and glucose metabolism in hypertensive rats. Nature Genetics 21, 76–83.CrossRefGoogle ScholarPubMed
Benson, DA, Bogusky, MS, Lipman, DJ, Ostell, J & Ouellette, BF (1998) GenBank. Nucleic Acids Research 26, 1–7.CrossRefGoogle ScholarPubMed
Boguski, MS, Lowe, TM & Tolstoshev, CM (1993) DbEST—database for `expressed sequence tags'. Nature Genetics 4, 332–333.CrossRefGoogle ScholarPubMed
Bouchard, C, Pérusse, L & Chagnon, YC, (1999) Genes and human obesity. In Nutrition, Genetics, and Obesity, vol. 9, pp. 25–46Pennington Center Nutrition Series, [Bray, GA and Ryan, DH, editors]. New Baton Rouge, LA: Louisiana State University Press.Google Scholar
Bowtell, D (1999) Options available – from start to finish – for obtaining expression data by microarray. Nature Genetics 21, 25–32.CrossRefGoogle ScholarPubMed
Brazma, A & Vilo, J (2000) Gene expression data analysis. FEBS Letters 480, 17–24.CrossRefGoogle ScholarPubMed
Brown, PO & Botstein, D (1999) Exploring the new world of the genome with DNA microarrays. Nature Genetics 21, 33–37.CrossRefGoogle ScholarPubMed
Brugarolas, J, Haymes, BH & Nevins, JR (2001) Towards a genomic-based diagnosis. Lancet 357, 249–250.CrossRefGoogle ScholarPubMed
Celis, JE, Kruhoffer, M, Gromova, I, Frederiksen, C, Ostergaard, M, Thykjaer, T, Gromov, P, Yu, J, Palsdottir, H, Magnusson, N & Orntoft, TF (2000) Gene expression profiling: monitoring transcription and translation products using DNA microarrays and proteomics. FEBS Letters 480, 2–16.CrossRefGoogle ScholarPubMed
Chagnon, YC, Pérusse, L, Weisnagel, SJ, Rankinen, T & Bouchard, C (2000) The human obesity gene map: the 1999 update. Obesity Research 8, 89–117.CrossRefGoogle ScholarPubMed
Cheng, J, Sheldon, EL, Wu, L, Uribe, A, Gerrue, LO, Carrino, J, Heller, MJ & O'Connell, JP (1998) Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips. Nature Biotechnology 16, 541–546.CrossRefGoogle Scholar
Cheung, VG, Morley, M, Aguilar, F, Massimi, A, Marcherlapati, R & Childs, G (1999) Making and reading microarrays. Nature Genetics 21, 15–19.CrossRefGoogle ScholarPubMed
Cole, KA, Krizman, DB & Emmert-Buck, MR (1999) The genetics of cancer – a 3D model. Nature Genetics 21, 38–41.CrossRefGoogle ScholarPubMed
DeRisi, JL, Penland, JL, Brown, PO, Bittner, ML, Meltzer, PS, Ray, M, Chen, Y, Su, YA & Trent, JM (1996) Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genetics 14, 457–460.Google ScholarPubMed
Debouck, C & Goodfellow, PN (1999) DNA microarrays in drug discovery and development. Nature Genetics 21, 48–50.CrossRefGoogle ScholarPubMed
Duggan, DJ, Bittner, M, Chen, Y, Meltzer, P & Trent, M (1999) Expression profiling using cDNA microarrays. Nature Genetics 21, 10–14.CrossRefGoogle ScholarPubMed
Fogelholm, M, Valve, R, Kukkonen-Harjula, K, Nenonen, A, Hakkarainen, V, Laakso, M & Uusitupa, M (1998) Additive effects of the mutations in the beta (3)-adrenergic receptor and uncoupling protein-1 genes on weight loss and weight maintenance in Finnish women. Journal of Clinical Endocrinology and Metabolism 83, 4246–4250.Google Scholar
Freeman, WM, Robertson, DJ & Vrana, KE (2000) Fundamentals of DNA hybridization arrays for gene expression analysis. Biotechniques 29, 1042–1055.CrossRefGoogle ScholarPubMed
Gabrielsson, BL, Carlsson, B & Carlsson, LMS (2000) Partial genome scale analysis of gene expression in human adipose tissue using DNA array. Obesity Research 8, 374–384.CrossRefGoogle ScholarPubMed
Gray, NS, Wodicka, L, Thunnissen, AM, Norman, TC, Kwon, S, Espinoza, FH, Morgan, DO, Barnes, G, LeClerc, S, Meijer, L, Kim, SH, Lockhart, DJ & Schultz, PG (1998) Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors. Science 281, 533–538.CrossRefGoogle ScholarPubMed
Hacia, JG (1999) Resequencing and mutational analysis using oligonucleotide microarrays. Nature Genetics 21, 42–47.CrossRefGoogle ScholarPubMed
Han, E, Hilsenbeck, SG, Richardson, A & Nelson, JF (2000) cDNA expression arrays reveal incomplete reversal of age-related changes in gene expression by calorie restriction. Mechanism of Ageing and Development 115, 157–174.CrossRefGoogle ScholarPubMed
Heller, MJ, Forster, AH & Tu, E (2000) Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications. Electrophoresis 21, 157–164.3.0.CO;2-E>CrossRefGoogle ScholarPubMed
Heller, RA, Schena, M, Chai, A, Shalon, D, Bedilion, T, Gilmore, J, Woolley, DE & Davis, RW (1997) Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proceedings of the National Academy of Sciences USA 94, 2150–2155.CrossRefGoogle ScholarPubMed
Kogure, A, Yoshida, T, Sakane, N, Umekawa, T, Takakura, Y & Kondo, M (1998) Synergic effect of polymorphisms in uncoupling protein 1 and beta3-adrenergic receptor genes on weight loss in obese Japanese. Diabetologia 41, 1399.Google ScholarPubMed
Kononen, J, Bubendorf, L, Kallioniemi, A, Barlund, M, Schraml, P, Leighton, S, Torhorst, J, Mihatsch, MJ, Sauter, G & Kallioniemi, OP (1998) Tissue microarrays for high-throughput molecular profiling of tumour specimens. Nature Medicine 4, 844–847.CrossRefGoogle Scholar
Lander, ES (1999) Array of hope. Nature Genetics 21, 3–4.CrossRefGoogle ScholarPubMed
Lee, WK, Padmanabha, S & Dominiczak, AF (2000) Genetics of hypertension: from experimental models to clinical applications. Journal of Human Hypertension 14, 631–647.CrossRefGoogle ScholarPubMed
Levin, BE (2000) The obesity epidemic: metabolic imprinting on genetically susceptible neural circuits. Obesity Research 8, 342–347.CrossRefGoogle ScholarPubMed
Lipshutz, RJ, Fodor, SP, Gingeras, TR & Lockhart, D (1999) High density synthetic oligonucleotide arrays. Nature Genetics 21, 20–24.CrossRefGoogle ScholarPubMed
Marti, A, Miguel, C, Jebb, SA, Lafontan, M, Laville, M, Palou, A, Remesar, X, Trayhurn, P & Martinez, JA (2000) Methodological approaches to assess body-weight regulation and aetiology of obesity. Proceedings of the Nutrition Society 59, 405–411.CrossRefGoogle ScholarPubMed
Marton, MJ, DeRisi, JL, Bennett, HA, Iyer, VR, Meyer, MR, Roberts, CJ, Stoughton, R, Burchard, J, Slade, D, Dai, H, Bassett, DE Jr, Hartwell, LH, Brown, PO & Friend, SH (1998) Drug target validation and identification of secondary drug target effects using DNA microarrays. Nature Medicine 4, 1293–1301.CrossRefGoogle ScholarPubMed
Marx, J (2000) DNA arrays reveal cancer in its many forms. Science 289, 1670–1672.CrossRefGoogle ScholarPubMed
Meirhaeghe, A, Helbecque, N, Cottel, D & Amouyel, P (1999) Beta2-adrenoceptor gene polymorphism, body weight and physical activity. Lancet 353, 896.CrossRefGoogle ScholarPubMed
Nadler, ST, Stoehr, JP, Schueler, KL, Tanimoto, G, Yandell, BS & Attie, AD (2000) The expression of adipogenic genes is decreased in obesity and diabetes mellitus. Proceedings of the National Academy of Sciences USA 97, 11371–11376.CrossRefGoogle Scholar
Nuwaysir, EF, Bittner, M, Trent, J, Barrett, JC & Afshari, CA (1999) Microarrays and toxicology: the advent of toxicogenomics. Molecular Carcinogenesis 24, 153–159.3.0.CO;2-P>CrossRefGoogle ScholarPubMed
Rininger, JA, DiPippo, VA & Gould-Rothberg, BE (2000) Differential gene expression technologies for identifying surrogate markers of drug efficacy and toxicity. Drug Discovery Today 5, 560–568.CrossRefGoogle ScholarPubMed
Roberts, M, Geiger, W & German, B (2000) The revolution in microanalytic chemistry: a macro-opportunity for clinical nutrition. American Journal of Clinical Nutrition 71, 434–437.CrossRefGoogle ScholarPubMed
Sallinen, SL, Sallinen, PK, Haapasalo, HK, Helin, HJ, Helen, PT, Schraml, P, Kallioniemi, OP & Kononen, J (2000) Identification of differentially expressed genes in human gliomas by DNA microarray and tissue chip techniques. Cancer Research 60, 6617–6622.Google ScholarPubMed
Schena, M, Shalon, D, Davis, RW & Brown, PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467–470.CrossRefGoogle ScholarPubMed
Schena, M, Shalon, D, Heller, R, Chai, A, Brown, PO & Davis, RW et al. (1996) Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proceedings of the National Academy of Sciences USA 93, 10614–10619.CrossRefGoogle ScholarPubMed
Schuler, GD, Boguski, MS, Stewart, EA, Stein, LD, Gyapay, G, Rice, K, White, RE, Rodriguez-Tome, P, Aggarwal, A, Bajorek, E, Bentolila, S & Birren, BB (1996) A gene map of the human genome. Science 274, 540–546.CrossRefGoogle ScholarPubMed
Soukas, A, Cohen, P, Socci, ND & Friedman, JM (2000) Leptin-specific patterns of gene expression in white adipose tissue. Genes and Development 14, 963–980.CrossRefGoogle ScholarPubMed
Takahashi, Y, Nagata, T, Asai, S, Shintaku, K, Egichi, T, Ishii, Y, Fujii, M & Ishikawa, K (2000) Detection of aberrations of 17p and p53 gene in gastrointestinal cancers by dual (two-colour) fluorescence in situ hybridization and GeneChip p53 assay. Cancer Genetics and Cytogenetics 121, 38–43.CrossRefGoogle Scholar
Trayhurn, P (1998) Molecular biology and nutrition: the quest for integration. British Journal of Nutrition 80, 305–306.Google ScholarPubMed
Yang, GP, Ross, DT, Kuang, WW, Brown, PO & Weigel, RJ (1999) Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes. Nucleic Acids Research 26, 1517–1523.CrossRefGoogle Scholar
Ye, P, Lin, L, York, DA & Bray, GA (2000) cDNA microarray analysis of white adipose tissue of mice after treatment with the β3-agonist CL-316,243. Obesity Research 8 Suppl. 1, 126S.Google Scholar