Hostname: page-component-cd9895bd7-mkpzs Total loading time: 0 Render date: 2024-12-23T03:33:31.608Z Has data issue: false hasContentIssue false

Overview of recent progress in fisheries acoustics made by Ifremer with examples from the Bay of Biscay

Published online by Cambridge University Press:  01 September 2009

Verena M. Trenkel
Affiliation:
Ifremer, Département EMH, rue de l'île d'Yeu, BP 21105, 44311 Nantes Cedex 3, France
Laurent Berger
Affiliation:
Ifremer, Département NSE, BP 70, 29280 Plouzané, France
Sébastien Bourguignon
Affiliation:
Ifremer, Laboratoire LTH, BP 70, 29280 Plouzané, France
Mathieu Doray
Affiliation:
Ifremer, Département EMH, rue de l'île d'Yeu, BP 21105, 44311 Nantes Cedex 3, France
Ronan Fablet
Affiliation:
Institut Telecom/Telecom Bretagne, CNRS UMR 3192, Lab-STICC, CS 83818, 29238 Brest Cedex 3, France Université européenne de Bretagne, 5 Bd René Laennec, 35000 Rennes, France
Jacques Massé
Affiliation:
Ifremer, Département EMH, rue de l'île d'Yeu, BP 21105, 44311 Nantes Cedex 3, France
Valérie Mazauric
Affiliation:
Ifremer, Département Direction des moyens et opérations navals, 155 rue Jean-Jacques Rousseau, 92138 Issy-les-Moulineaux, France
Cyrille Poncelet
Affiliation:
Ifremer, Département NSE, BP 70, 29280 Plouzané, France
Gael Quemener
Affiliation:
Ifremer, Département NSE, BP 70, 29280 Plouzané, France
Carla Scalabrin
Affiliation:
Ifremer, Laboratoire LTH, BP 70, 29280 Plouzané, France
Hector Villalobos
Affiliation:
Ifremer, Département EMH, rue de l'île d'Yeu, BP 21105, 44311 Nantes Cedex 3, France Current address: CICIMAR-IPN, Av. Instituto Politécnico Nacional s/n., Col. Playa Palo de Sta. Rita, La Paz, BCS 23090, Mexico
Get access

Abstract

This paper provides an overview of the progress Ifremer has made recently in fisheries acoustics and the study of small pelagic fish by: i) pushing observation frontiers using a range of platforms including an autonomous underwater vehicle, AUV, ii) developing measuring instruments and methods and iii) studying fish distributions. Presently, information from several frequencies of single-beam echosounders is routinely collected together with data from the ME70 multibeam echosounder. For onboard data acquisition control the HERMES software was developed. The new MOVIES 3D software includes modules for simultaneous realistic 3D visualisation and post-processing such as bottom detection, school extraction and calculation of descriptors and integration of all acoustic data. Several data analysis methods are being developed and some initial results are presented. Finally, results on the spatial distribution of small pelagic fish schools in the Bay of Biscay illustrate the role that acoustics can play, and are already playing, in the implementation of an ecosystem approach to fisheries.

Type
Review Article
Copyright
© EDP Sciences, IFREMER, IRD, 2009

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Axenrot, T., Didrikas, T., Danielsson, C., Hansson, S., 2004, Diel patterns in pelagic fish behaviour and distribution observed from a stationary, bottom-mounted, and upward-facing transducer. ICES J. Mar. Sci. 61, 11001104. CrossRef
Berger, L., Poncelet, C., Trenkel, V.M., 2009, A method for reducing uncertainty in estimates of fish-school frequency response using data from multifrequency and multibeam echosounders. ICES J. Mar. Sci. 66, 11551161. CrossRef
Bertrand, A., Barbieri, M.A., Gerlotto, F., Leiva, F., Córova, J., 2006, Determinism and plasticity of fish schooling behaviour as exemplified by the South Pacific jack mackerel Trachurus murphyi. Mar. Ecol. Prog. Ser. 311, 145156. CrossRef
Bertrand, A., Gerlotto, F., Bertrand, S., Gutiérrez, M., Alza, L., Chipollini, A., Díaz, E., Espinoza, P., Ledesma, J., Quesquén, R., Peraltilla, S., Chavez, F., 2008, Schooling behaviour and environmental forcing in relation to achoveta distribution: An analysis across multiple spatial scales. Prog. Oceanogr. 79, 264277. CrossRef
Bourguignon, S., Berger, L., Scalabrin, C., Fablet, R., Mazauric, V., 2009, Methodological developments for improved bottom detection with the ME70 multibeam echosounder. ICES J. Mar. Sci. 66, 10151022. CrossRef
Brehmer, P., Georgakarakos, S., Josse, E., Trygonis, V., Dalen, J., 2007, Adaptation of fisheries sonar for monitoring schools of large pelagic fish: dependence of schooling behaviour on fish finding efficiency. Aquat. Living Resour. 20, 377384. CrossRef
Burgos, J.M., Horne, J.K., 2007, Sensitivity analysis and parameter selection for detecting aggregations in acoustic data. ICES J. Mar. Sci. 64, 160168.
Burgos, J.M., Horne, J.K., 2008, Characterization and classification of acoustically detected fish spatial distributions. ICES J. Mar. Sci. 65, 12351247. CrossRef
Castillo, J., Barbieri, M.A., Gonzalez, A., 1996, Relationships between sea surface temperature, salinity and pelagic fish distribution off northern Chile. ICES J. Mar. Sci. 53, 139146. CrossRef
Coetzee, J., 2000, Use of a shoal analysis and patch estimation system (SHAPES) to characterise sardine schools. Aquat. Living Resour. 13, 110. CrossRef
Cutte, G.R. Jr., Demer, D.A., 2007, Accounting for scattering directivity and fish behaviour in multibeam-echsounder surveys. ICES J. Mar. Sci. 64, 16641674. CrossRef
Dalen, J., Nedreaas, K., Pedersen, R., 2003, A comparative acoustic-abundance estimation of pelagic redfish (Sebastes mentella) from hull-mounted and deep-towed acoustic systems. ICES J. Mar. Sci. 60, 472479. CrossRef
De Robertis, A., Hjellvik, V., Williamson, N.J., Wilson, C.D., 2008, Silent ships do not always encounter more fish: comparison of acoustic backscatter recorded by a noise-reduced and a conventional research vessel. ICES J. Mar. Sci. 65, 623635. CrossRef
Demer, D.A., Renfree, J.S., 2008, Variations in echosounder-transducer performance with water temperature. ICES J. Mar. Sci. 65, 10211035. CrossRef
Diner N., Le Men R., 1983, Evaluation acoustique des stocks de poisson pélagiques dans la partie sud du golfe de Gascogne en avril-mai 83. ICES CM 1983/H: 44.
Diner, N., 1999, Correction of school geometry and density: an approach based on acoustic image simulation. ICES Coop. Res. Rep. 238, 2751.
Diner, N., 2001, Correction on school geometry and density: approach based on acoustic image simulation. Aquat. Living Resour. 14, 211222. CrossRef
Doray, M., Josse, E., Gervain, P., Reynal, L., Chantrel, J., 2007, Joint use of echosounding, fishing and video techniques to assess the structure of fish aggregations around moored Fish Aggregating Devices in Martinique (Lesser Antilles). Aquat. Living Resour. 20, 357366. CrossRef
Doucet A., 1998, On sequential simulation-based methods for Bayesian filtering. Signal Processing Department, University, Cambridge.
Fabi, G., Sala, A., 2002, An assessment of biomass and diel activity of fish at an artificial reef (Adriatic Sea) using a stationary hydroacoustic technique. ICES J. Mar. Sci. 59, 411420. CrossRef
Fablet, R., Lefort, R., Karoui, I., Berger, L., Massé, J., Scalabrin, C., Boucher, J.M., 2009, Classifying fish schools and estimating their species proportions in fishery-acoustic surveys. ICES J. Mar. Sci. 66, 11361142. CrossRef
Fässler, S.M.M., Santos, R., García-Nuñez, N., Fernandes, P.G., 2007, Multifrequency backscattering properties of Atlantic herring (Clupea harengus) and Norway pout (Trisopterus esmarkii). Can. J. Fish. Aquat. Sci. 64, 362374. CrossRef
Fernandes, P.G., Brierley, A.S., Simmonds, E.J., Millards, N.W., McPhail, S.D., Armstrong, F., Stevenson, P., Squires, M., 2000, Fish do not avoid survey vessels. Nature 404, 3536. CrossRef
Fernandes, P.G., Stevenson, P., Brierley, A.S., Armstrong, F., Simmonds, E.J., 2003, Autonomous underwater vehicles: future platforms for fisheries acoustics. ICES J. Mar. Sci. 60, 684691. CrossRef
Foote K.G., 2006, Optimizing two targets for calibrating a broadband multibeam sonar. Oceans 2006 Conference, Boston MA, Vol. 1–4, pp. 1499–1502.
Fréon, P., Cury, P., Shannon, L., Roy, C., 2005, Sustainable exploitation of small pelagic fish stocks challenged by environmental and ecosystem changes: a review. Bull. Mar. Sci. 76, 385462.
Gerlotto, F., 1993, Identification and spatial stratification of tropical fish concentrations using acoustic populations. Aquat. Living Resour. 6, 243254. CrossRef
Gerlotto, F., Soria, M., Fréon, P., 1999, From two dimensions to three: the use of multibeam sonar for a new approach in fisheries acoustics. Can. J. Fish. Aquat. Sci. 56, 612. CrossRef
Gerlotto, F., Paramo, J., 2003, The three-dimensional morphology and internal structure of clupeid schools as observed using vertical scanning multibeam sonar. Aquat. Living Resour. 16, 113122. CrossRef
Gerlotto, F., Castillo, J., Saavedra, A., Barbieri, M.A., Espejo, M., Cotel, P., 2004, Three-dimensional structure and avoidance behaviour of anchovy and common sardine schools in central southern Chile. ICES J. Mar. Sci. 61, 11201126. CrossRef
Gorska, N., Ona, E., Korneliussen, R., 2005, Acoustic backscattering by Atlantic mackerel as being representative of fish that lack a swimbladder, backscattering by individual fish. ICES J. Mar. Sci. 62, 984995. CrossRef
Hamitouche-Djabou C., Togni S., Lecornu L., 1999, SBI Viewer: 3D fish schools and sea bottom analysis and visualisation software. User's Guide. AVITIS Contract FAIR CT 96-1717, Development release 3–10 June, 1999 Dpt ITI, ENST-Bretagne, Brest.
Hammond, T.R., Swartzman, G.L., 2001, A general procedure for estimating the composition of fish school clusters using standard acoustic survey data. ICES J. Mar. Sci. 58, 11151132. CrossRef
Handegard, N.O., Tjøstheim, D., 2005, When fish meet a travelling vessel: examining the behaviour of gadoids using a free-floating buoy and acoustic split-beam tracking. Can. J. Fish. Aquat. Sci. 62, 24092422. CrossRef
Haralambous, J., Georgakarakos, S., 1996, Artificial neural networks as a tool for species identification of fish schools. ICES J. Mar. Sci. 53, 173180. CrossRef
ICES, 2005, Description of the ICES HAC standard data exchange format, Version 1.60. ICES Coop. Res. Rep. 278.
Jech, J.M., Michaels, W.L., 2006, A multifrequency method to classify and evaluate fisheries acoustics data. Can. J. Fish. Aquat. Sci. 63, 22252235. CrossRef
Kloser, R.J., 1996, Improved precision of acoustic surveys of benthopelagic fish by means of deep-towed transducer. ICES J. Mar. Sci. 53, 407413. CrossRef
Kloser, R.J., Ryan, T., Sakov, A., Williams, A., Koslow, J.A., 2002, Species identification in deep water using multiple acoustic frequencies. Can. J. Fish. Aquat. Sci. 59, 10651077. CrossRef
Korneliussen, R., Ona, E., 2003, Synthetic echograms generated from relative frequency response. ICES J. Mar. Sci. 60, 636640. CrossRef
Korneliussen, R.J., Diner, N., Ona, E., Berger, L., Fernandes, P.G., 2008, Proposals for the collection of multifrequency acoustic data. ICES J. Mar. Sci. 65, 982994. CrossRef
Koslow, J.A. 2009, The role of acoustics in ecosystem-based fishery management. ICES J. Mar. Sci. 66, 966–973.
Lecornu L., Burdin V., Scalabrin C., Hamitouche C., 1998, Fish school analysis from multibeam sonar image processing. Oceans 98 Conference, Nice, pp. 587–591.
Lurton, X., 2000, Swath bathymetry using phase difference: Theoretical analysis of acoustical measurement precision. IEEE J. Ocean. Engine. 25, 351363. CrossRef
Lurton, X., 2002, An introduction to underwater acoustics: Principles and applications. Springer Verlag.
MacLennan, D.N., Copland, P.J., Armstrong, E., Simmonds, E.J., 2004, Experiments on the discrimination of fish and seabed echoes. ICES J. Mar. Sci. 61, 201210. CrossRef
Massé J., Rouxel C., 1991, Improvement in acoustic assessments by discrimination of pelagic shoals with INES/MOVIES system. ICES Annual Science Conference, CM 1991/B:26.
Massé, J., 1996, Acoustic observations in the Bay of Biscay: schooling, vertical distribution, species assemblages and behaviour. Sci. Mar. 60 (Suppl. 2), 227234.
Massé, J., Koutsikopoulos, C., Patty, W., 1996, The structure and spatial distribution of pelagic fish schools in multispecies clusters: an acoustic study. ICES J. Mar. Sci. 53, 155160. CrossRef
Massé, J., Gerlotto, F., 2003, Introducing nature in fisheries research: the use of underwater acoustics for an ecosystem approach of fish population. Aquat. Living Resour. 16, 107112. CrossRef
Moreno, G., Josse, E., Brehmer, P., Nøttestadd, L., 2007, Echotrace classification and spatial distribution of pelagic fish aggregations around drifting fish aggregating devices (DFAD). Aquat. Living Resour. 20, 343356. CrossRef
Ona, E., Mitson, R.B., 1996, Acoustic sampling and signal processing near the seabed: the deadzone revisited. ICES J. Mar. Sci. 53, 677690. CrossRef
Ona, E., Godø, O.R., Handegard, N.O., Hjellvik, V., Patel, R., Pedersen, G., 2007, Silent research vessels are not quiet. J. Acoust. Soc. Am. 121, 145150. CrossRef
Ona, E., Mazauric, V., Andersen, L.N., 2009, Calibration methods for two scientific multibeam systems. ICES J. Mar. Sci. 66, 13261334. CrossRef
Opderbecke J., Laframboise J.-M., 2007, AUVs for oceanographic science at IFREMER, project progress and operational feedback. Oceans 2007 Conference, Vancouver, Vol. 1–5, pp. 356–360.
Orlowski, A., 2005, Experimental verification of the acoustic characteristics of the clupeoid diel cycle in the Baltic. ICES J. Mar. Sci. 62, 11801190. CrossRef
Patel, R., Handegard, N.O., Godø, O.R., 2004, Behaviour of herring (Clupea harengus L.) towards an approaching autonomous underwater vehicle. ICES J. Mar. Sci. 61, 10441049. CrossRef
Petitgas, P., Reid, D., Carrera, P., Iglesias, M., Georgakarakos, S., Liorzou, B., Massé, J., 2001, On the relation between schools, clusters of schools, and abundance in pelagic fish stocks. ICES J. Mar. Sci. 58, 11502001. CrossRef
Petitgas, P., Massé, J., Beillois, P., Lebarbier, E., Le Cann, A., 2003, Sampling variance of species identification in fisheries-acoustic surveys based on automated procedures associating acoustic images and trawl hauls. ICES J. Mar. Sci. 60, 437445. CrossRef
Petitgas P., Massé J., Bourriau P., Bellois P., Bergeron J.-P., Delmas D., Herbland A., Koueta N., Froidefond M., Santos, M., 2006, Hydro-plankton characteristics and their relationship with sardine and anchovy distributions on the French shelf of the Bay of Biscay. Sci. Mar. 70S1, 161–172.
Planque, B., Lazure, P., Jégou, A.-M., 2004, Detecting hydrological landscapes over the Bay of Biscay continental shelf in spring. Climate Res. 28, 4152. CrossRef
Rigaud, V., 2007, Innovation and operation with robotized underwater systems. J. Field Robotics 24, 449459. CrossRef
Scalabrin, C., Massé, J., 1993, Acoustic detection of the spatial and temporal distribution of fish shoals in the Bay of Biscay. Aquat. Living Resour. 6, 269283. CrossRef
Scalabrin, C., Diner, N., Weill, A., Hillion, A., Mouchot, M.C., 1996, Narrowband acoustic identification of monospecific fish schools. ICES J. Mar. Sci. 53, 181188. CrossRef
Scalabrin C., Diner N., Veron G., Choqueuse D., Sanchez F., 2005, Autonomous bottom moored acoustic observatory for fisheries resources monitoring. Oceans 2005 Conference, Brest, Vol. 1–2.
Scalabrin, C., Marfia, C., Boucher, J., 2009, How much fish is hidden in surface and bottom acoustic blind zones? ICES J. Mar. Sci. 66, 13551363.
Simmonds E.J., MacLennan D.N., 2005, Fisheries acoustics. Theory and practice. 2nd edition. Blackwell, Oxford.
Soria, M., Bahri, T., Gerlotto, F., 2003, Effect of external factors (environment and survey vessel) on fish school characteristics observed by echosounder and multibeam sonar in the Mediterranean Sea. Aquat. Living Resour. 16, 145157. CrossRef
Totland, A., Johansen, G.O., Godø, O.R., Ona, E., Torkelsen, T., 2009, Quantifying and reducing the surface blind zone and the seabed dead zone using new technology. ICES. Mar. Sci. 66, 13701376. CrossRef
Trenkel, V.M., Mazauric, V., Berger, L., 2008, The new multibeam fisheries echosounder ME70: description and expected contribution to fisheries research. ICES J. Mar. Sci. 65, 645655. CrossRef
Trevorrow, M.V., 2005, The use of moored inverted echo sounders for monitoring meso-zooplankton and fish near the ocean surface. Can. J. Fish. Aquat. Sci. 62, 10041018. CrossRef
Trygonis, V., Georgakarakos, S., Simmonds, E.J., 2009, An operational system for automatic school identification on multi-beam sonar echoes. ICES J. Mar. Sci. 66, 935949. CrossRef
Villalobos H., 2008, Évolution de l'écosystème pélagique du golfe de Gascogne pendant la période 1990-2003. Conséquences sur la capturabilité des espèces. PhD, Université de Bretagne Occidentale.
Weill, A., Scalabrin, C., Diner, N., 1993, MOVIES-B: an acoustic detection description software. Application to shoal species' classification. Aquat. Living Resour. 6, 255267. CrossRef
Zwolinski, J., Morais, A., Marques, V., Stratoudakis, Y., Fernandes, P.G., 2007, Diel variation in the vertical distribution and schooling behaviour of sardine (Sardina pilchardus) off Portugal. ICES J. Mar. Sci. 64, 963972. CrossRef