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Isolation and use of microsatellite loci in Melicertus kerathurus (Crustacea, Penaeidae)

Published online by Cambridge University Press:  17 March 2010

Marco Arculeo
Affiliation:
Dipartimento di Biologia Animale “G. Riverberi”, Università degli studi di Palermo, Via Archirafi 18, 90123 Palermo, Italy
Rosalia Pellerito
Affiliation:
Dipartimento di Biologia Animale “G. Riverberi”, Università degli studi di Palermo, Via Archirafi 18, 90123 Palermo, Italy
François Bonhomme
Affiliation:
Institut des Sciences de l'Evolution, CNRS UMR 5554, Université de Montpellier II, Station méditerranéenne de l'Environnement littoral, 1 quai de la Daurade, Sète 34200, France
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Abstract

Melicertus kerathurus represents an economically important resource for fisheries and aquaculture. Seven microsatellite loci from 373 specimens of M. kerathurus collected in different parts of the Mediterranean and NE Atlantic were identified. Four of these microsatellites showed a moderate level of polymorphism, with 2 to 14 alleles per locus, whereas three had a monomorphic profile. Observed and expected heterozygosity ranged between 0.28 to0.64 and 0.28 to 0.65, respectively. Three microsatellite loci deviated from Hardy-Weinberg equilibrium in some populations, with a deficit of heterozygosity. Mean Fst values showed significant differentiation among sample sites analysed and indicate that these loci are useful for the study of genetic variation in this species. These results may supply functional information on the population genetic structure of Melicertus kerathurus, valuable for future sustainable management strategies.

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© EDP Sciences, IFREMER, IRD, 2010

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References

Ball, A.O., Chapman, R.W., 2003, Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers. Mol. Ecol. 12, 23192330.
Belkhir K., Borsa P., Chikhi L., Raufaste N., Bonhomme, F., 2001, GENETIX 4.02, logiciel sous Windows ™ pour la génétique des populations. Laboratoire Génome, populations, interactions. CNRS UMR 5000, Univ. Montpellier II, Montpellier.
Benzie, J.A.H., 2000, Population genetic structure in penaeid prawns. Aquac. Res. 31, 95119. CrossRef
Brooker, A.L., Benzie, J.A.H., Blair, D., Versini, J.J., 2000, Population structure of the giant tiger prawn, Penaeus monodon, in Australian waters using microsatellite markers. Mar. Biol. 136, 149157. CrossRef
Castric, V., Bernatchez, L., Belkhiri, K., Bonhomme, F., 2002, Heterozygote deficiencies in small lacustrine populations of brook charr Salvelinus fontinalis Mitchill (Pisces, Salmonidae): a test of alternative hypotesis. Heredity 89, 2735.
Conides, A., Glamuzina, B., Jug-Dujakovic, J., Papaconstantinou, C., Kapiris, K., 2006, Age, growth and mortality of the kamarote shrimp, Melicertus kerathurus (Forskal, 1775), in the east Ionian Sea (Western Greece). Crustaceana 79, 3352. CrossRef
FAO 2008, FAO Yearbook. Fishery and aquaculture statistics 2006, pp. 1–80.
Garcia S., Le Reste L., 1981, Cycles vitaux, dynamique, exploitation et aménagement des stocks de crevettes pénaeides côtières. FAO Doc. Tech. Pêches 203, pp. 1–210.
Hamilton, M.B., Pincus, E.L., Di Fiore, A., Fleischer, R.C., 1999, Unversal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27, 500507.
Hare M.P., 2001, Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 16,700–706.
Hedrick, P.W., 1999, Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53, 313318. CrossRefPubMed
Holthius L.B., 1980, FAO species catalogue. Shrimp and prawns of the world. An annotated catalogue of species of interest to fisheries. FAO Fish Synopsis, 1, 125.
Kandpal, R.P., Kandpal, G., Weissman, S.M., 1994, Construction of libraries enriched for sequence repeats and jumping clones, and hybridisation selection for region –specific markers. Proc. Nat. Acad. USA 91, 8892. CrossRef
Kijas, J.M., Fowler, J.C., Garbett, C.A., Thomas, M.R., 1994, Enrichment of microsatellites from the Citrus genome using biotinylated oligonucleotide sequences bound to streptavidin – coated magnetic particles. Biotechniques 16, 656 –662.
Lumare, F., 1976, Research on the reproduction and culture of shrimp Penaeus kerathurus in Italy. General Fisheries Council for the Mediterranean. Stud.Rev. 55, 3548.
Lumare, F., Palmegiano, G.B., 1980, Acclimatazione di Penaeus japonicus nella laguna di Lesina (Italia Sud Orientale). Rivi. Ital. Pisc. Ittiopatol. 15, 5358 (in Italian).
Mattoccia M., La Rosa G., De Mattheis E., Coboldi-Sbordoni M., Sbordoni V., 1987, Patterns of genetic variabilità in Mediterranean populations of Penaeus kerathurus (Crustacea Decapoda). In: K. Tiews (Ed.), Selection, Hybridization and Genetic Engineering in Aquaculture. Heenemann-Verlag, Berlin, pp. 131–142.
Oosterhout, C.V., Hutchinson, W.F., Wills, D.P., Shiply, P., 2004, Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4, 535538. CrossRef
Pellerito R., Arculeo M., Bonhomme F., 2009, Recent expansion of Northeast Atlantic and Mediterranean populations of Melicertus (Penaeus) kerathurus (Crustacea: Decapoda). Fish. Sci. 75,1089–1095.
Raymond M., Rousset F., 2004, GENEPOP version 3.4: population genetics software for exact test and ecumuenicism, Available at: http://wbiomed.curtin.edu.au/genepop/html.
Tassanakajon, A., Pongsomboon, S., Jarayabhand, P., Klibunga, S., Boonsaeng, V.V., 1998, Structure in wild populations of black tiger shrimp (Penaeus monodon) using randomly amplified polymorphic DNA analysis. J. Mar. Biotechnol. 6, 249254.
Valles-Jimenez, R., Cruz, P., Perez-Enriquez, R., 2005, Population genetic structure of Pacific withe shrimp (Litopenaeus vannamei) from Mexico to Panama : Microsatellite DNA variation. Mar. Biotechnol. 6, 475484. CrossRef
Xu, Z., Primavera, J.H., de la Pena, L.D., Pettit, P., Belak, J., Alcivar-Warren, A., 2001, Genetic diversity of wild and cultured black tiger shrimp (Penaeus monodon) in the Philippines using microsatellites. Aquaculture 199, 1340. CrossRef
Zane, L, Bargelloni, L., Patarnello, T., 2002, Stategies for microsatellites isolation: a review. Mol. Ecol. 11, 116. CrossRef
Zitari-Chatti, R., Chatti, N., Elouaer, A., Said, K., 2008, Genetic variation and population structure of the camarote prawn Penaeus kerathurus (Forskal) from the eastern and western Mediterranean coasts in Tunisia. Aquac. Res. 39, 7076. CrossRef
Zitari-Chatti, R., Chatti, N., Fulgione, D., Chiazza, I., Aprea, G., Elouaer, A., Said, K., Capriglione, T., 2009, Mitochondrial DNA variation in the camarote prawn Penaeus (Melicertus) kerathurus across a transition zone in the Mediterranean Sea. Genetica 3, 439447. CrossRef