We review the lithic microbial ecosystems of the McMurdo Dry Valleys as the main form of terrestrial colonization in this region, and assess the role of environmental controls such as temperature, solar radiation, water availability, wind, nutrient availability, salinity and the physicochemical properties of the colonized rock. Epilithic communities, especially those dominated by lichens, are able to withstand extreme environmental conditions but subsurface endolithic microhabitats provide more tolerant conditions. Endolithic microbial communities can be grouped into two main classes: eukaryotic communities (dominated by lichenized fungi and algae) and prokaryotic communities (dominated by cyanobacteria). Heterotrophic bacteria and non-lichenized algae and fungi (mainly black fungi) are also components of these communities. These lithobiontic microorganisms generally have effective mechanisms against freezing temperatures and desiccation. Extracellular polymeric substances play an important role not only in protecting microbial cells but also in community organization and in mitigating microenvironmental conditions. Antarctic lithobiontic communities are comprised of microbial consortia within which multiple interactions between the different biological and abiotic components are essential for microbial survival, whilst fossils and biomarkers provide evidence of earlier successful microbial life in Antarctic deserts. Finally, the uniqueness of the present lithobiont assemblages suggests they are the outcome of geographical isolation during the evolution of the continent and not merely the descendants of a subset of globally distributed taxa that have adapted to the extreme environmental conditions.

Site selection for Antarctic research stations is of great importance and is necessary to support Antarctic expeditions. Site selection is affected by both the scientific investigations planned and the expected life of stations following construction. In the site allocation process, an efficient spatial data management system is required to manage various criteria and a robust allocation method is important to handle decision uncertainties. The aim of this study was to build a criteria system and to conduct a site selection process with aid from geographical information systems (GIS) and the fuzzy analytical hierarchy process (FAHP). In considering the natural environment and building conditions, fifteen factors were used as multiple evaluation sub-criteria and grouped into four main criteria: scientific research, environment, logistical support and topography. Comparisons were made between potentially suitable areas and the locations of existing stations and camps to demonstrate fitness-for-use of the allocation results. Finally, the suitability map was applied to identify candidate sites for a new Chinese research station by considering the position of current stations and areas of scientific interest. This model offers a comprehensive methodology for decision-makers in the assessment of potential Antarctic research station sites.

We identified two ice-binding protein (IBP) sequences, named EFsymbAFP and EFsymbIBP, from a putative bacterial symbiont of the Antarctic psychrophilic ciliate Euplotes focardii. EFsymbAFP is 57.43% identical to the antifreeze protein (AFP) from the Stigmatella aurantiaca strain DW4/3-1, which was isolated from the Victoria Valley lower glacier. EFsymbIBP is 53.38% identical to the IBP from the Flavobacteriaceae bacterium strain 3519-10, isolated from the glacial ice of Lake Vostok. EFsymbAFP and EFsymbIBP are 31.73% identical at the amino acid level and are organized in tandem on the bacterial chromosome. The relatively low sequence identity and the tandem organization, which appears unique to this symbiont, suggest an occurrence of horizontal gene transfer (HGT). Structurally, EFsymbAFP and EFsymbIBP are similar to the AFPs from the snow mould fungus Typhula ishikariensis and from the Arctic yeast Leucosporidium sp. AY30. A phylogenetic analysis showed that EFsymbAFP and EFsymbIBP cluster principally with the IBP sequences from other Antarctic bacteria, supporting the view that these sequences belong to an Antarctic symbiontic bacterium of E. focardii. These results confirm that IBPs have a complex evolutionary history, which includes HGT events, most probably due to the demands of the environment and the need for rapid adaptation.

The diet of Dissostichus mawsoni captured by bottom longline in the Ross Sea region was examined during 2003, 2005 and 2010. The diet of sub-adult toothfish was similar to adult toothfish, comprising mainly benthic fishes and cephalopods. Sub-adult toothfish ate a greater variety of smaller prey than adults, including smaller fish and prawns. Grenadiers (Macrourus spp.) were the most important fish and overall prey species. On the continental slope, icefish (Channichthyidae) and eel cods (Muraenolepididae) were also important fish prey, while Psychroteuthis glacialis was the most important cephalopod prey. On oceanic features, toothfish fed mainly on Macrourus spp. but also fed on Antimora rostrata, cephalopods and the occasional mesopelagic to epipelagic fish. Diet varied significantly with toothfish size and location on northern parts of the Mawson and Iselin banks of the Ross Sea continental slope. There was no significant temporal change in diet composition.

We have investigated how the microbially-driven processes of carbon (C) mineralization (respiration) and nitrogen (N) mineralization/immobilization in a soil from the northern Maritime Antarctic respond to differences in water availability (20% and 80% water-holding capacity) and temperature (5°C and 15°C) in the presence and absence of different organic substrates (2 mg C as either glucose, glycine or tryptone soy broth (TSB) powder (a complex microbial growth medium)) in a controlled laboratory experiment over 175 days. Soil respiration and N mineralization/immobilization in the presence of a C-rich substrate (glucose) increased with increases in water and temperature. These factors were influential individually and had an additive effect when applied together. For the N-rich substrates (glycine and TSB), microbial responses to increased water or temperature alone were weak or not significant, but these factors interacted to give significantly positive increases when applied together. These data indicate that under the expected changes in environmental conditions in the Maritime Antarctic, where temperature and the availability of water and organic substrates will probably increase, soil microbial activity will lead to more rapid C and N cycling and have a positive feedback on these biogeochemical processes, particularly where or when these factors increase concurrently.

Despite their pivotal role as primary producers, there is little information as to the diversity and physiology of cyanobacteria in the meltwater ecosystems of polar regions. Thirty cyanobacterial mats from Adelaide Island, Antarctica were investigated using 16S rRNA gene pyrosequencing and automated ribosomal intergenic spacer analysis, and screened for cyanobacterial toxins using molecular and chemical approaches. A total of 274 operational taxonomic units (OTUs) were detected. The richness ranged between 8 and 33 cyanobacterial OTUs per sample, reflecting a high mat diversity. Leptolyngbya and Phormidium (c. 55% and 37% of the OTUs per mat) were dominant. Cyanobacterial community composition was similar between mats, particularly those obtained from closely adjacent locations. The cyanotoxin microcystin was detected in 26 of 27 mats (10–300 ng g-1 organic mass), while cylindrospermopsin, detected for the first time in Antarctica, was present in 21 of 30 mats (2–156 ng g-1 organic mass). The latter was confirmed via liquid chromatography-mass spectrometry and by the presence of the cyrAB and cyrJ genes. This study demonstrates the usefulness of pyrosequencing for characterizing diverse cyanobacterial communities, and confirms that cyanobacteria from extreme environments produce a similar range of cyanotoxins as their temperate counterparts.

At-sea behaviour of central-place foraging fur seals and penguins in the Southern Ocean is understudied during the latter stages of parental care and the subsequent pre-moulting period. This biologically important period is costly to investigate due to the risk (or certainty) of losing tracking instruments when the animals moult. Early in this period, parents must meet the increasing demands of larger, more mobile offspring that are still nutritionally dependent and then the parents must recover lost body condition prior to the onset of their annual moult. This study reports late-season, at-sea movement patterns of macaroni penguins, chinstrap penguins and adult female Antarctic fur seals from the subantarctic island Bouvetøya, in relation to remotely-sensed oceanographic features. Foraging trips differing significantly in direction and distance travelled compared to those performed earlier in the breeding season, coincide with the time when offspring would be expected to become independent. On these trips, macaroni penguins moved towards the Polar Front while chinstrap penguins and Antarctic fur seals moved southward. Individuals from all three species appeared to target submesoscale ocean features once they were presumed to have been released from the constraints of feeding their young and were able to travel greater distances from the colony.

The diet of Antarctic salps was elucidated by investigating their gut content using automated ribosomal intergenic spacer analysis (ARISA) and 454-pyrosequencing. Salp samples were collected during the Lazarev Sea Krill Study in the western Weddell Sea (summer 2005–06 and 2007–08, autumn 2004 and winter 2006). Two salp species, Salpa thompsoni and Ihlea racovitzai, both occur in the Southern Ocean and can overlap geographically and seasonally. We provide evidence that, despite the non-selective feeding mechanism, the two co-occurring salp species might have different niches within a habitat. ARISA-patterns of 93 gut content samples revealed strong differences between the two salp species, even at the same sampling site. These differences were confirmed by 454-pyrosequencing of the V4-18S rDNA of ten salps. The pyrosequencing data indicate that flagellates, in particular dinophyceae, constitute a high proportion of the sequence reads identified in the gut content of both salp species. However, within the dinophyceae, differences in the read composition were detected between the two salp species. This supports the findings of a previous study where fatty acid signatures indicate a flagellate-based diet, even though microscopic analyses identified diatoms as the dominant component of salp gut contents.

The meiobenthic community of Potter Cove (King George Island, west Antarctic Peninsula) was investigated, focusing on responses to summer/winter conditions in two study sites contrasting in terms of organic matter inputs. Meiofaunal densities were found to be higher in summer and lower in winter, although this result was not significantly related to the in situ availability of organic matter in each season. The combination of food quality and competition for food amongst higher trophic levels may have played a role in determining the standing stocks at the two sites. Meiobenthic winter abundances were sufficiently high to infer that energy sources were not limiting during winter, supporting observations from other studies for both shallow water and continental shelf Antarctic ecosystems. Recruitment within meiofaunal communities was coupled to the seasonal input of fresh detritus for harpacticoid copepods but not for nematodes, suggesting that species-specific life history or trophic features form an important element of the responses observed.

Soil moisture is a spatially heterogeneous quantity in the McMurdo Dry Valleys of Antarctica that exerts a large influence on the biological community and on the thermal state of Dry Valleys permafrost. The goal of this project was to determine whether hyperspectral remote sensing techniques could be used to determine soil moisture conditions in the Dry Valleys. We measured the spectral reflectance factors of wetted soil samples from the Dry Valleys under natural light conditions and related diagnostic spectral features to surface layer soil moisture content. Diagnostic water absorption features in the spectra at 1.4 µm and 1.9 µm were present in all samples, including samples doped with high concentrations of chloride salts. The depth of the 1.4 µm absorption is shown to increase linearly with increasing gravimetric water content. These results suggest that airborne hyperspectral imaging of the Dry Valleys could generate soil moisture maps of this environment over large spatial areas using non-invasive remote-sensing techniques.

Soil chronosequences in till deposits emplaced during glacial retreat in the Central Transantarctic Mountains are described. Discrepancies between the degree of soil development and reported cosmogenic surface exposure ages suggest slower, weaker soil development in this region than encountered in other areas of Antarctica. The study sites (Dominion Range, Mount Achernar and Ong Valley) were located between 83° and 85°S, at altitudes of 1600–2200 m, on the edge of the polar plateau. Soil landscape maps show a gradation of soil properties across landscape units that were designated as homogenous/single-event drifts in previous smaller-scale studies. Along transects away from the current ice edge, the depth to underlying ice thickened (from 2 cm to > 80 cm), soil became more weathered, saltier and less alkaline, and horizonation became more pronounced. Soil thickness, clast abundance and soil chemistry are all consistent with a two-layer mode of soil formation. We suggest that a thin, clast-rich surface horizon, originating from weathering of supraglacial debris, overlies a thick, clast-poor sublimation till. The supraglacial debris has a finite contribution to soil volume, whereas sublimation offers an ongoing source of soil material that thickens the soil from its base.

Palaeoclimate changes, such as the Medieval Climate Anomaly and the Little Ice Age, are well-defined in the Northern Hemisphere during the past 2000 years. In contrast, these anomalies appear to be either absent, or less well-defined, in high-latitude regions of the Southern Hemisphere. Here, we inferred environmental changes during the past two millennia from proxies in a sediment core from Mago Ike, an East Antarctic lake in Skarvsnes (Lützow Holm Bay). Variations in lake primary production were inferred from fossil pigments, sedimentological and geochemical proxies and combined with absolute diatom counts to infer past diatom productivity and community changes. Three distinct stratigraphic zones were recognized, resulting from a shift from marine to lacustrine conditions with a clear transition zone in between. The presence of open-water marine diatoms indicates a coastal zone seasonally free of sea ice between c. 2120–1500 cal yr bp. Subsequently, the lake became isolated from the ocean due to isostatic uplift. Freshwater conditions were established from c. 1120 cal yr bp onwards after which the proxies are considered highly sensitive to temperature changes. There is no evidence for a Medieval Climate Anomaly, Little Ice Age or twentieth century warming in our lake sediment record suggesting that studies that have imposed Northern Hemisphere climate anomalies onto Southern Hemisphere palaeoclimate records should be treated with caution.