The lipid composition of natural populations of diatoms in the sea ice at McMurdo Sound was determined during the austral spring bloom of 1985, using and Iatroscan TLC–FID system. The major lipid classes in all samples were polar lipids (including phospholipid, glycolipid and chlorophyll) and triacylglycerol, with lesser proportions of free fatty acids. Total lipid increased through November and early December, reaching a maximum (3300 mg m−2 at Cape Armitage and 1800 mg m−2 at Erebus Ice Tongue) c. one week after the chlorophyll a maxima. This increase was largely attributable to a corresponding increase in triacylglycerol. At the lipid maxima, triacylglycerol/polar lipid ratios in the range 1.0 to 2.5 were observed. The dynamic variations in lipid class abundances indicate that profound changes in the physiology of sea-ice diatoms are occurring throughout the spring bloom. A range of sterols (C26–C30) were detected; 24-methylenecholesterol, brassicasterol and 24-ethylcholesterol were the major sterols at the Cape Armitage and Erebus sites. The similarity of the sterol profiles to those of Antarctic freshwater algal communities strongly indicates diatoms as a more probable source of C29 sterols in the freshwater lakes than cyanobacteria or other algal groups. The hydrocarbons isolated from sea-ice diatoms at all sites were dominated by two unsaturated components, n−C21:6 and a diunsaturated isoprenoid C25 alkene. Until this study, no biological source had been validated for the isoprenoid C25:2 diene, even though it has been detected in many estuarine and coastal sediments.