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from Part IV - Genome-Scale Algorithms
Published online by Cambridge University Press: 28 September 2023
A pragmatic problem arising in the analysis of biological sequences is that collections of genomes, and especially collections of read sets consisting of material from many species, occupy too much space. This chapter explores techniques to efficiently compress such collections. Several algorithms related to Lempel–Ziv factorization are covered, as well as the prefix-free parsing technique to run-length encode the Burrows–Wheeler transform of a collection of genomes.
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