Variations in environmental conditions along gradients play an important role in species distribution through environmental filtering of morphological and physiological traits; however, their effects on bat diversity remain poorly understood. Here, we investigate the effect of the distance to the nearest watercourse, terrain elevation, vegetation clutter, basal area and canopy height on taxonomic, functional and phylogenetic diversity and on the predominance of some functional traits (body mass, wing morphology and trophic level) of bat assemblages (phyllostomid and mormoopid bats) in a terra firme forest, in the northeastern Brazilian Amazon. We captured bats using mist nets in 15 permanent plots over a 25 km2 area of continuous forest. We captured 279 individuals belonging to 28 species with a total of 77.760 m2.h of sampling effort. Our results showed that bat richness increases as a function of distance to the nearest watercourse and that the assemblage also changes, with more diverse taxonomic and functional groups in areas further from the watercourse. Furthermore, elevation positively affects species richness, and the basal area of the forest positively influences the average body mass of bats. Taken together, our results demonstrate that subtle variations in the environmental conditions along a local scale gradient impact on the main dimensions of bat diversity in primary forests.

The fire regime is essential in creating a mosaic of plant structure and diversity in South American open savannas, especially favouring herbs. However, studies investigating diversity patterns in Neotropical savannas rarely focus on the herb–subshrub layer. This study investigated the variation of the herb–subshrub layer under contrasting fire regimes in the most conserved site within the Cerrado Domain, the Jalapão region, Brazil. We selected four sites of open savanna physiognomy with similar topographic, climatic and edaphic features: three burned every 2 years, while the fourth site has remained unburned for at least the last 10 years. We randomly distributed 15 plots of 4 m2 in each site and identified all herbs and subshrubs in each plot to estimate density, richness, alpha diversity and species composition. The unburned site had lower herb–subshrub density, richness and diversity than the frequently burned sites. Species composition varied between frequently burned and unburned sites, partially explained by the fire frequency across sites. Although other ecological factors may explain the patterns detected, we cannot rule out the importance of fire in structuring plant communities in the Jalapão region. As in other savannas, our study in the Cerrado Domain reinforces the essential role of the fire regimes in modifying and maintaining the diversity of herbaceous plants at the landscape scale.

We analysed thirty-five 400-m2 plots encompassing forest, savanna and intermediate vegetation types in an ecotonal area in Ghana, West Africa. Across all plots, fire frequency was over a period of 15 years relatively uniform (once in 2–4 years). Although woodlands were dominated by species typically associated with savanna-type formations, and with forest formations dominated by species usually associated with closed canopies, these associations were non-obligatory and with a discrete non-specialized species grouping also identified. Across all plots, crown area index, stem basal area and above-ground biomass were positively associated with higher soil exchangeable potassium and silt contents: this supporting recent suggestions of interplays between potassium and soil water storage potential as a significant influence on tropical vegetation structure. We also found an average NDVI cover increase of ~0.15% year−1 (1984–2011) with plots dominated by non-specialized species increasing more than those dominated by either forest- or savanna-affiliated species. Our results challenge the traditional view of a simple forest vs. savanna dichotomy controlled by fire, and with our newly identified third non-specialized species grouping also potentially important in understanding ecotonal responses to climate change.

Paleovegetation modeling simulations of the lowland Amazon basin were made to assess the relative importance of glacial climate and atmospheric CO2 for altering vegetation type and structure, as well as to explore the potential physiological mechanisms underlying these ecosystem-level responses. Modeling results support the view that widespread invasion of grasslands into the Amazon lowlands during the last glaciation was not likely. Glacial cooling was probably responsible for maintaining glacial forest cover via its effects in reducing photorespiration and decreasing evapotranspiration, which collectively improve plant carbon and water relations. Modeling results confirm that leaf area index (LAI), a common proxy for canopy density, is highly sensitive to independent and interactive changes in climate and low concentration of atmospheric CO2, and the results show considerable region-to-region variation during the last glaciation. Heterogeneous variations in glacial vegetation LAI may have promoted allopatric speciation by geographically isolating species (called vicariance) in the forest (sub)canopy. The proposed vicariance hypothesis incorporating spatial variations in canopy density conforms to many of the essential tenets addressed by previous neotropical speciation models, but also helps to overcome some of their inconsistencies.

The relative importance of different bottom-up-mediated effects in shaping insect communities in tropical secondary forests are poorly understood. Here, we explore the roles of vegetation structure, forest age, local topography (valley vs. hill top) and soil variables in predicting fruit-feeding butterfly and tree community composition, and tree community composition in predicting fruit-feeding butterfly community composition, in different-aged naturally regenerating and primary forests of Kibale National Park, Uganda. We also examine which variables are best predictors of fruit-feeding butterfly species richness or diversity. Butterflies (88 species) were sampled with a banana-baited trap and trees (98 taxa) with a 40 × 20-m sampling plot at 80 sampling sites. The environmental variables explained 31% of the variation in the tree community composition, the best predictors being local topography, forest age and cover of Acanthus pubescens (a shrub possibly arresting succession). The fruit-feeding butterfly community composition was better predicted by tree community composition (explaining 10% of the variation) rather than vegetation structure, local topography or soil factors. Environmental variables and tree species richness (or diversity) were poor predictors of butterfly species richness (or diversity). Our results emphasize the importance of tree community to recovery of herbivorous insect communities in tropical secondary forests.

We investigated the influence of a four-year-old forest edge near Manaus, Brazil, on soil moisture and vertical profiles of air vapour pressure deficit (VPD) within the forest. Soil moisture was measured (with a neutron probe) 0, 5, 10, 20, 40, 60, 80, 100, 150 and 200 m into the forest from the edge, in undisturbed control areas, and in the pasture. Control soil moisture was better explained by rainfall in the previous 2 or 10 days than by longer-term totals. Soil water potentials ≤ – 1.5 MPa occurred at some forest locations during the driest period. The variation in soil moisture with distance from the forest edge was complex, with higher values just inside the edge and depleted zones at the edge and 40–80 m inside it. At a given height, VPD (standardized relative to measurements in the open) was not related to distance from the edge, but VPD increased more with height near the edge than in control areas. The complexity of the edge's influence and the contrast with earlier data from the same edge can be explained by the changing vegetation structure near the edge. Regrowth ‘seals’ the edge with more leaves that transpire and deplete soil moisture, while protecting the understorey just inside the edge from desiccating conditions. A mosaic of gaps of differing ages develops behind the edge, increasing the variation in microclimatic conditions near the ground and consequently in evapotranspiration and soil moisture.

The abundance and diversity of soil macrofauna were assessed in a range of vegetation types in northern Botswana. Hand-sorting of soil was used to extract all fauna greater than 2 mm body length from sandy soils in both the dry season (June) and towards the end of the single rainy season (February). Abundance varied significantly between samples from within a sampling location, within a vegetation type and occasionally between seasons. Greater densities were found in wet season samples from locations within closed canopy woodland except where permanent water was a significant feature of the habitat. Overall abundance was comparable to published estimates from more moist tropical and temperate habitats suggesting an important role for soil macrofauna in semi-arid systems. Ordinal level diversity also varied significantly within vegetation types and with season.

The wet evergreen forest of Nelliampathy in the Western Ghats of Kerala in India is a mixed forest with a high species diversity and basal cover. In this relatively undisturbed ecosystem, canopy gaps are largely formed through single tree fall, but gaps through branch fall, crown fall, standing dead trees or multiple tree fall also occur. Canopy gap formation is more (over 82% of the total gaps created) during the monsoon season. The mean number of gaps formed in this forest is 1.13 ha−1 y−1 and the turnover rate is 83 years. The majority of the gaps created (over 70%) are of smaller size (≥ 100 m2). In this forest, while some top canopy tree species (those capable of exceeding 25 m in height at maturity) such as Palaquium ellipticum and Mesua nagassarium are well represented in seedling, sapling and mature tree stages, others like Aglaia exstipulata and Mastixia arborea are observed only as saplings and/or mature trees with no seedling populations. The possible reasons for these two types of regeneration behaviour by top canopy tree species in the context of canopy gap size and seasonality in gap formation are discussed.

To determine whether the relative abundance of immature Ixodes dammini (the vector of Lyme disease and human babesiosis) is related to habitat structure, we examined tick burdens on their main host, the white-footed mouse (Peromyscus leucopus), in 4 structurally diverse sites on Great Island, Massachusetts, USA. Vegetation structure at each site was quantified with respect to 25 habitat variables. Principal components analysis was used to reduce this set of habitat variables to seven new and orthogonal variables. Immature tick abundance varied widely among grids. Regression analysis of tick burdens on the habitat principal components showed that larval burdens were related strongly to the density of woody vegetation and negatively to herbaceous vegetation. Nymphal burdens were related negatively to herbaceous vegetation, but the relationship was not as strong as in the case of larvae. An experimental reduction in the abundance of white-tailed deer (Odocoileus virginianus), the main host of adult ticks, substantially reduced tick burdens and altered their relationships to habitat structure. Nymphal burdens were unrelated to habitat structure following deer removal. Manipulating habitat structure may have utility as a control strategy against this important vector.

We studied bird community composition and abundance within four vegetation and disturbance categories located within selectively logged and unlogged forest in a Bolivian subtropical lowland forestry concession. The logged forest was subject to reduced-impact logging between 1 and 4 years prior to our study. The four categories were: 1) ‘gap’ points possessing natural or anthropogenic tree-fall gaps; 2) ‘target’ points with one of five commercial tree species of harvestable size; 3) ‘future’ points possessing a commercial tree below harvestable size and 4) ‘non-target’ points not possessing harvestable tree species. The bird community composition of logging gaps significantly differed from that found within natural tree-fall gaps in the unlogged forest P< 0.05. Species richness was higher in natural tree-fall gaps than in anthropogenic gaps. Furthermore, a higher proportion of disturbance sensitive species were associated with natural-tree fall gaps, whereas a higher proportion of disturbance tolerant species were associated with anthropogenic gaps. No significant difference was detected in the bird community composition for the other three vegetation categories surveyed. We discuss the conservation and silvicultural repercussions of these results.