Porina fortunata P. M. McCarthy & Etayo sp. nov. (Trichotheliaceae) is described from shaded basalt in Gomera, Canary Islands. It is characterized by a richly rimose to areolate thallus, small, prominent and outwardly blackish perithecia that are internally orange-brown and narrow and elongate, 3(-7)-septate ascospores.

The influence of acute gamma radiation on four physiological characteristics of lichens was investigated. Membrane permeability in irradiated thalli of Cladonia arbuscula, Cetraria islandica and Hypogymnia physodes increased considerably compared to controls. The nitrogen content in Peltigera aphthosa appeared to be stable to acute gamma radiation. Up to 1000 Gy there was no essential decrease in respiration intensity in H. physodes and P. aphthosa or of peroxidase activity in P. aphthosa..

Dirina mexicana Tehler from the western coasts of Mexico is proposed as a new species. It mostly resembles D. immersa and D. insulana from the western mediterranean region in Europe.

Thallus organization is examined in Aspicilia californica Rosentreter, fruticose lichen known from several localities in central and southern California. The sprawling, terete thallus branches possess a dense central medulla of thickwalled, longitudinally oriented fungal cells. This central tissue emerges at branch apices to form a darkly pigmented fungal tip. Thallus development involves the apical extension of the tip to produce a fungal tissue over which a cylindrical algal layer and cortex will eventually be formed. Apical branches are initiated by furcation entirely within the fungal tip. Lateral branches, emerging from the lichenized thallus, arise as a divergent bundle of elongate fungal cells originating in the medulla. The photobiont appears to play no direct role in initiation of apical or lateral branches. It is concluded that thallus development in A. californica occurs with a relatively low degree of synchrony between mycobiont and photobiont growth, similar to the pattern observed in crustose lichens with prothallic growth. A rather similar type of thallus organization is observed in A. hispida, although in that species mycobiont growth and branch initiation appear to be somewhat more closely associated with algal cell proliferation. A squamulose Aspicilia from central Spain produces rhizomorphs that may sometimes become invested with an algal layer and cortex, resembling the thallus axes of A. californica.

There is still a high diversity of lichen-forming fungi that remains undescribed, especially cryptic lineages at the species level. Integrating morphological, chemical, and DNA sequence data has proved useful in corroborating species descriptions and delimitations. Here we reviewed morphological features, secondary metabolites and the DNA sequences of ITS, mtSSU and nuLSU markers to study the diversity of Xanthoparmelia in southern Africa. A total of 37 species were recorded. Three of these appear undescribed, and we therefore describe them here as new: Xanthoparmelia nimisii, with a sorediate thallus and broad lobes, is well supported as a clade separate from X. annexa; X. pseudochalybaeizans with a white medulla is phylogenetically distinct from the otherwise similar X. chalybaeizans; and X. sipmaniana, well supported as a separate clade from the similar X. hypoprocetrarica. In addition, the separation of Xanthoparmelia capensis and X. tinctina requires further studies.

We present a novel identification tool called PhyloKey, based on the method of morphology-based, phylogenetic binning developed within the software package RAxML. This method takes a reference data set of species for which both molecular and morphological data are available, computes a molecular reference tree, maps the morphological characters on the tree, and computes weights based on their level of consistency versus homoplasy using maximum likelihood (ML) and maximum parsimony (MP). Additional units for which only morphological data are known are then binned onto the reference tree, calculating bootstrap support values for alternative placements. This approach is modified here to work as an identification tool which uses the same character coding approach as interactive keys. However, rather than identifying individual samples through a progressive filtering process when entering or selecting characters, query samples are binned in batch mode to all possible alternative species in the tree, with each placement receiving a bootstrap support adding to 100% for all alternative placements. In addition to the fact that, after scoring a character matrix, a large number of specimens can be identified at once in short time, all possible alternative identifications are immediately apparent and can be evaluated based on their bootstrap support values. We illustrate this approach using the basidiolichen genus Cora, which was recently shown to contain hundreds of species. We also demonstrate how the PhyloKey approach can aid the restudying of herbarium samples, adding further value to these collections and contributing with large quantitative data matrices to ‘non-molecular museomics’. Our analysis showed that PhyloKey identifies species correctly with as low as 50% of the characters sampled, depending on the nature of the reference tree and the character weighting scheme. Overall, a molecular reference tree worked best, but a randomized reference tree gave more consistent results, whereas a morphological reference tree performed less well. Surprisingly, even character weighting gave the best results, followed by parsimony weighting and then maximum likelihood weighting.

The production of anthraquinones is a major characteristic of most species in the Teloschistaceae. Other secondary metabolites are quite rare in this family, but some species are known to produce depsides, depsidones, xanthones and usnic acid. A new monotypic genus, Neoplaca, with a new species N. mirabilis, is described from the subfamily Caloplacoideae of the family Teloschistaceae, lacking anthraquinones but containing the naphthopyrans simonyellin and consimonyellin. This is the first time this class of organic compounds has been found in the family Teloschistaceae and the second in the order Teloschistales, where simonyellin has been detected in Brigantiaeaceae. Simonyellin and consimonyellin have also previously been reported in the family Roccellaceae. Neoplaca mirabilis is currently known from the two nearby localities in Yakutia, Russia, where it is common and grows on base-rich soil on exposed south-facing siliceous outcrops. The thallus consists of scattered whitish to greyish, or rarely with pale yellow tinge, squamules 1–4.5 mm diam. and 0.3–1 mm thick with citrine to orange-yellow blastidia produced from their margin; apothecia and pycnidia are unknown. In addition to naphthopyrans, N. mirabilis contains an unidentified brown pigment similar in some features to melanin. The new species is also interesting in that the pigments are apparently located inside the cells of the cortex, not on their surface, where anthraquinones are found in Teloschistaceae.

Recent studies have demonstrated that species boundaries among the lichen-forming fungi are in need of revision with the discovery of cryptic species in numerous clades, especially in parmelioid lichens. Here we focus on addressing the species boundaries in Canoparmelia texana, a sorediate species with a pantropical distribution that extends into temperate regions. We extracted DNA sequences of the nuclear ribosomal internal transcribed spacer region (ITS), large subunit (nuLSU) and mitochondrial small subunit (mtSSU) from samples mostly collected in Kenya, and analyzed them in a phylogenetic framework. We illustrate that our samples of the species as currently circumscribed do not form a monophyletic group but fall into two distinct clades, with the apotheciate C. nairobiensis nested within. Both of the discovered lineages have a wide distributional range and are common in Kenya, and Parmelia albaniensis C. W. Dodge is resurrected to accommodate one of the clades; consequently a new combination, Canoparmelia albaniensis (C. W. Dodge) Divakar & Kirika comb. nov., is proposed.

Two new species in Leptogium are described and illustrated from the Cape Horn region: L. auriculatum and L. adnatum both grow on wet rocks, the former by a river, the latter on coastal rocks. In addition to the special habitat the latter is easily identified on the closely appressed thallus which centrally often have densely packed squamules in intricately folded structures. Leptogium auriculatum is characterized by the regular, rounded lobes with thickened margins carrying granular isidia. The total number of Leptogium species known in the region at present is 19, including the previously doubtful L. patagonicum Zahlbr., which is here confirmed as a distinct species.

Persepolis, a UNESCO World Heritage Site in south-western Iran, dates back to more than 2500 years ago, and is colonized by a great diversity of lichen-forming fungi. A survey of the lichen-forming fungi revealed a species abundant in different areas of the cultural site, which turned out to be a new species of the genus Circinaria. The new species, Circinaria persepolitana, is introduced and described on the basis of morphological and molecular data. Circinaria persepolitana is characterized by having a crustose thallus, rimose to areolate, usually with bullate areoles, with an olive green to olive-brown surface and angular to elongate areoles in the marginal zone. Phylogenetic analyses including other species of the genus showed that the new species is phylogenetically close to C. mansourii, C. ochracea and C. reptans. We propose a new combination of Circinaria reptans (Looman) Sohrabi, Owe-Larsson & Paukov. The bioweathering capacity of the new species was also analyzed by scanning electron microscopy, examining the interface between the lichen thallus and the lithic substratum to assess its potential threat to the conservation of heritage surfaces. We found this species to be a potential biodeteriogenic agent, as thalli were closely attached to the lithic substratum and biogeophysical and biogeochemical changes at the rock surface could be associated with the colonization.

A novel lichen species occurring on rocks was collected from three different localities within Deosai National Park, Gilgit-Baltistan, Pakistan. Phylogenetic analyses of the nrDNA ITS and nuLSU regions revealed that it clustered within the genus Anamylopsora. Further chemical and morpho-anatomical analyses confirmed its uniqueness, and it is described here as a new species under the name A. pakistanica. The distinguishing characters are: an irregularly squamulose appressed thallus on rocks without rhizines; an epinecral layer up to 25 μm thick; ascospores that are hyaline, simple, thick-walled with a smooth surface; septate paraphyses with a pigmented apical cell in a gel-like matrix; globose to subglobose pycnidia with hyaline and bacilliform pycnidiospores. In particular, the species is distinguished from other members of the genus by morpho-anatomical features including the coloration of the thalli, the presence of a thick lower cortex (up to 100 μm), and the presence of simple, thick-walled ascospores. Specimens were found at altitudes up to 4587 m, the highest elevation yet reported for Anamylopsora. A key and comparison to all existing species of the genus Anamylopsora is also given.

The relationship between thallus size and apothecium density was studied in two umbilicate lichens, Umbilicaria cylindrica and Lasallia pensylvanica, growing in alpine rock surface environments. Samples of the two lichens were collected from the Daisetsuzan National Park, northern Japan. Umbilicaria cylindrica produced many smaller apothecia, whereas L. pensylvanica had larger but fewer apothecia. To explain the differences in reproductive efforts between these two species, we analyzed the lichen data using a hierarchical Bayesian model in which the density of apothecia for each species was predicted by the thallus area and the sky openness index (SOI). The Bayesian model including unobservable effects, i.e. the random effects of individual lichens and rock faces, predicted that the apothecium density for both species increased as the thallus area increased. The estimated coefficient of thallus area to apothecium density for U. cylindrica was larger than that for L. pensylvanica. We also detected a probable positive relationship between SOI and apothecium density for U. cylindrica, whereas none was detected for L. pensylvanica.

Five species of Eremothecella are recorded from the Andaman Islands, two of which are described as new: Eremothecella ajaysinghii Jagad. Ram & G. P. Sinha and E. nicobarica Jagad. Ram & G. P. Sinha. Eremothecella ajaysinghii has whitish grey, pruinose ascomata and 8–10(–11)-septate ascospores, while E. nicobarica has non-pruinose ascomata and (14–)15–17-septate ascospores. Eremothecella calamicola Syd., E. macrosperma (Zahlbr.) Sérus. and E. variratae (Aptroot & Sipman) Sérus. are reported as new records for India. An updated worldwide key to species of the genus is presented.

The new genus Sinuicella, an early successional lichen, was found on bare soil in Oregon, USA. The thallus is minute fruticose, grey to nearly black, branching isotomic dichotomous, branches round, 20–90 μm wide in water mount. The cortex is composed of interlocking cells shaped like jigsaw puzzle pieces. Spores are hyaline, 1-septate, 25–40(–50) × 6.5–9(–11) μm. Maximum likelihood phylogenetic analyses on multilocus data sets, first spanning the entire order Peltigerales and then restricted to Peltigeraceae with extended sampling from Solorina and Peltigera, revealed the placement of Sinuicella outside of currently recognized genera, sister to Peltigera, with high support. Based on the phylogenetic, morphological and ecological distinctness of Sinuicella, we formally introduce a new genus represented by the single species S. denisonii. The cyanobiont of S. denisonii is Nostoc from phylogroup XL, Clade 2, Subclade 3 based on the rbcLX marker.