In South-East Asian tropical plants, the excess production of reproductive organs is believed to be controlled by resource booms. However, the continuously flowering shrub Dillenia suffruticosa (Dilleniaceae) is often infested by fruit predators and occasionally produces fruits where mature seeds are absent. These reproductive features may support an alternative hypothesis for excess production of reproductive organs: the reproductive assurance hypothesis. We marked 1190 reproductive organs in 180 inflorescences of 41 plant individuals and examined the relationships among the reproductive organ features and the effects of both climate and predators. During the flower budding stage, the fate of reproductive organs was primary climate-induced. The percentage of flower/fruit abscission increased as the cumulative temperature and photosynthetically active radiation (PAR) decreased and the cumulative precipitation increased, supporting the resource boom hypothesis. Insect predation was the most common fate of immature fruits. As PAR increased, the prevalence of insect predation and production of mature seed increased. At a reduced PAR, the production of fruits with many immature seeds could serve as compensatory reproductive organs for insect predators, consistent with the reproductive assurance hypothesis. The excess production of reproductive organs might be a result of adaptation to climate fluctuations in the South-East Asian tropics.

The competitive influence of the root system of the exotic grass Urochloa brizantha and the widespread forb Leonotis nepetifolia on the emergence, survival and early growth of the seedlings of eight tropical heliophilous herbaceous species, six early-successional woody species and five late-successional woody species from Brazil, grown in 3500-cm3 pots and in greenhouse without light restriction were assessed. The density of fine-root systems produced by the forb and the grass in pots were 6.8 cm cm−3 soil and 48.1 cm cm−3 soil, respectively. Seedlings survival of the heliophilous herbaceous, early- and late-successional woody species were 86%, 70% and 100% in presence of the forb root system and 12%, 14% and 100% in competition with grass root system, respectively. The competitive pressure applied by the grass root system on seedling growth of the heliophilous herbaceous, early- and late-successional woody species were 2.4, 1.9 and 1.4 times greater than the forb root system. Total root length of the heliophilous herbaceous, early- and late-successional woody species grown without competitors were 13, 33 and 5 times greater than in competition with forb, and were 66, 54 and 6 times greater than in competition with grass root system, respectively. The averages of fine-root diameter of plants grown without competitors were 209 μm for the heliophilous herbaceous, 281 μm for early-successional trees and 382 μm for late-successional trees. The root system of the forb did not avoid seedling establishment of most plant species, but the grass root system hampered more the establishment of heliophilous herbaceous and early-successional woody species than the seedling establishment of late-successional woody species. The different density of root systems produced in soil by the forb and the grass, and the distinct root traits (e.g. root diameter and root tissue density) of the early- and late-successional plant species can explain the differences in the establishment of seedlings of plant species belonging to different groups of tropical succession when exposed to below-ground competition.

Disturbance is a central process in forest dynamics, yet the role of natural disturbance in tropical montane forests (TMFs) has not been systematically addressed. We posit that disturbance in TMFs has a wider role than commonly acknowledged and its effects are distinctive because: (1) TMFs often have very low rates of productivity due to low resources, and so recovery from disturbance may be slow, (2) montane forests have marked environmental heterogeneity which interacts with disturbance, (3) a large percentage of TMFs are regularly exposed to high energy windstorms and landslides, and (4) TMFs contain a biogeographically rich mixture of tree species with divergent evolutionary histories that interact differently with different disturbance types. We reviewed the literature on natural disturbance in TMFs and found 119 peer-reviewed papers which met our search criteria. Our review shows that disturbance is widespread in TMFs with pronounced effects on structure, function, composition and dynamics. Disturbance is also evident in the ecology of TMF biota with clear examples of plant life-history traits adapted to disturbance, including disturbance-triggered germination, treefall gap strategies and resprouting ability. Important aspects of TMF disturbances are stochastic and site-specific, but there are broad patterns in disturbance type, frequency and severity along latitudinal, altitudinal and environmental gradients. Compared with the lowland tropics, TMF disturbances are more spatially structured, TMFs experience more disturbance types in a given area due to environmental complexity, and TMFs are much more prone to small-scale yet severe landslides as well the large and potentially catastrophic disturbances of cyclones, forest die-back and fire. On the whole, natural disturbance should assume a larger role in models of ecosystem processes and vegetation patterns in TMFs. An improved understanding of what creates variation in disturbance severity and post-disturbance recovery rates, how composition and diversity feedback on disturbance type and likelihood, and how global change will alter these dynamics are important priorities in future TMF ecology research.

We examined quantity and quality components of primary seed dispersal for an assemblage of sigmodontine rodents in a high-elevation montane tropical forest in Peru. We collected faecal samples from 134 individuals belonging to seven rodent species from the subfamily Sigmodontinae (Cricetidae) over a 2-y period. We conducted seed viability tests for seeds found in faecal samples. We identified seeds from eight plant families (Bromeliaceae, Annonaceae, Brassicaceae, Ericaceae, Melastomatacae, Myrtaceae, Rosaceae, Solanaceae), nine genera and 13 morphospecies. The most abundant seeds belonged to Gaultheria sp. 1 (46% of total) and Miconia sp. 1 (31% of total), while the most viable seeds belonged to Greigia sp. (84% viability) and Guatteria sp. (80% viability). We utilized relative rodent abundance, seed species diversity, seed abundance and seed viability per rodent species to calculate an index of rodent disperser effectiveness, and found that Thomasomys kalinowskii was the most effective disperser, followed by Akodon torques, Calomys sorellus, Thomasomys oreas, Oligoryzomys andinus and Microryzomys minutus. Plant genera dispersed by sigmodontine rodents overlapped more with bird- and terrestrial-mammal-dispersed plants than with bat-dispersed plants. Future neotropical seed dispersal studies should consider small rodents as potential seed-dispersers, especially in tropical habitats where small-seeded, berry-forming shrubs and trees are present.

The Brazilian Amazon rain forest has lost c. 17% of its originally forested portion, due to deforestation and selective logging. Forest degradation caused by logging contributes to loss of animal species that require specialized habitats to survive, such as woodcreepers that inhabit understorey areas. Habitat associations of woodcreeper species can be important for identifying species that have restricted distribution and/or habitat specialization. Our study investigates the effects of spatial variation in forest structure and some landscape features (canopy openness, altitude, distance to stream and exploited basal area) on the abundance and composition of woodcreeper assemblage in selectively logged tropical forests in Southern Amazonia. We used mist-nets and points count to quantify the composition and abundance of woodcreepers in 32 plots in three sites. Plots were spatially arranged in PPBio LTER sites (long-term ecological research plots, systematically spaced at 1-km intervals) in Southern Amazonia. A total of 240 individuals (captured, observed and/or heard) belonging to 11 woodcreeper species were detected. Mantel tests showed that there is no spatial autocorrelation among woodcreeper assemblage and distance between plots. Altitude and canopy openness were significantly associated with the composition of the woodcreeper assemblage. Altitude was negatively associated with species richness, and the abundance of the two dominant species (Glyphorynchus spirurus and Xiphorhynchus elegans). The negative relationship with canopy openness suggests that woodcreeper assemblages that inhabit understorey are likely to be indirectly affected by selective logging which reduces canopy cover. The selective logging indirectly changes bird species assemblages, and depending on the intensity, may result in the local extinction of some insectivorous species. Short- and long-term studies addressing different intensities of selective logging are needed to determine the impacts on the bird species and forest structure.

Ecological and evolutionary factors influence the presence of modules in species interaction networks, and these modules usually cluster functional similar species. But whether closely related species form modules is still unknown. We tested whether the interaction networks formed by frugivorous birds and Miconia plants are modular and evaluated how modules were divided. To do so, we gathered from the literature data concerning four networks of Miconia and their frugivorous birds (three from Brazilian savanna and one from a rain forest in Panama). We quantified modularity using binary and weighted algorithms and also tested the relationship between bird traits (body mass, dietary specialization, migratory behaviour and phylogeny) in relation to within- and among-module connectivity indices (c and z values). If considering only binary information, networks did not present distinct modular structure. Nevertheless, by including interaction strength, modules can be detected in all four Miconia-bird networks. None of the bird traits, however, was related with the connectivity indices. The possible fluctuation of frugivorous bird abundance coupled with the asynchronic fruiting period of Miconia might favour the formation of temporal modules comprising birds and plant species with phenological overlap, ensuring seed dispersal and facilitating the coexistence in sympatry. Bird traits had little effect on the role that each species plays within the modular network, probably because the frugivorous assemblages were dominated by small-bodied and opportunistic species.

The Atlantic forest is the biome most severely affected by deforestation in Brazil. Cabralea canjerana spp. canjerana is a dioecious tree species with widespread distribution in the Neotropical region. This species is considered a model to ascertain population ecology parameters for endangered plant species from the Atlantic forest. Fine-scale spatial genetic structure and pollen-mediated gene flow are crucial information in landscape genetics and evolutionary ecology. A total of 192 adults and 121 offspring were sampled in seven C. canjerana populations in the Southern Minas Gerais State, Brazil, to assess whether pollen-mediated gene flow is able to prevent spatial genetic structure within and among Atlantic forest fragments. Several molecular ecology parameters were estimated using microsatellite loci. High levels of genetic diversity (HE = 0.732) and moderate population structure (θ = 0.133) were recorded. No significant association between kinship and spatial distance amongst individuals within each population (Sp = 0.000109) was detected. Current pollen-mediated gene flow occurs mainly within forest fragments, probably due to short-distance flights of the pollinator of C. canjerana, and also the forest fragmentation may have restricted flight distance. The high levels of genetic differentiation found amongst the seven sites sampled demonstrated how habitat fragmentation affects the gene flow process in natural areas.

Tropical montane cloud forests (TMCFs) are dynamic ecosystems defined by frequent, but intermittent, contact with fog. The resultant microclimate can vary considerably over short spatial and temporal scales, affecting the ecophysiology of TMCF plants. We synthesized research to date on TMCF carbon and water fluxes at the scale of the leaf, plant and ecosystem and then contextualized this synthesis with tropical lowland forest ecosystems. Mean light-saturated photosynthesis was lower than that of lowland forests, probably due to the effects of persistent reduced radiation leading to shade acclimation. Scaled to the ecosystem, measures of annual net primary productivity were also lower. Mean rates of transpiration, from the scale of the leaf to the ecosystem, were also lower than in lowland sites, likely due to lower atmospheric water demand, although there was considerable overlap in range. Lastly, although carbon use efficiency appears relatively invariant, limited evidence indicates that water use efficiency generally increases with altitude, perhaps due to increased cloudiness exerting a stronger effect on vapour pressure deficit than photosynthesis. The results reveal clear differences in carbon and water balance between TMCFs and their lowland counterparts and suggest many outstanding questions for understanding TMCF ecophysiology now and in the future.

Theoretical models predict that plant interactions with free-living soil microbes, pathogens and fungal symbionts are regulated by nutrient availability. Working along a steep natural gradient of soil fertility in a Costa Rican tropical dry forest, we examined how soil nutrients affect plant–microbe interactions using two complementary approaches. First, we measured mycorrhizal colonization of roots and soil P availability in 18 permanent plots spanning the soil fertility gradient. We measured root production, root colonization by mycorrhizal fungi, phosphatase activity and Bray P in each of 144 soil cores. Next, in a full-factorial manipulation of soil type and microbial community origin, tree seedlings of Albizia guachapele and Swietenia macrophylla were grown in sterilized high-, intermediate- and low-fertility soils paired with microbial inoculum from each soil type. Seedling growth, biomass allocation and root colonization by mycorrhizas were quantified after 2 mo. In the field, root colonization by mycorrhizal fungi was unrelated to soil phosphorus across a five-fold gradient of P availability. In the shadehouse, inoculation with soil microbes had either neutral or positive effects on plant growth, suggesting that positive effects of mycorrhizal symbionts outweighed negative effects of soil pathogens. The presence of soil microbes had a greater effect on plant biomass than variation in soil nutrient concentrations (although both effects were modest), and plant responses to mycorrhizal inoculation were not dependent on soil nutrients. Taken together, our results emphasize that soil microbial communities can influence plant growth and morphology independently of soil fertility.

Many Neotropical felids are threatened with extinction due to direct effects of habitat destruction and/or human persecution. However, indirect and synergistic effects of human-felid conflict remain under-studied and potentially include increased stress and diet shifts that may negatively impact felid health. We hypothesized that faecal glucocorticoid metabolites (FGM) and endoparasite species richness (ESR) would be higher, and diet would shift, for felids outside protected areas where conflict occurs. In north-western Belize, a scat-detector dog located 336 faecal samples, identified to species and individual using DNA analyses. DNA amplification success was substantially higher within protected areas than outside. We detected jaguar, puma, ocelot, jaguarundi and domestic cat. FGMs were higher in puma and jaguarundi than in other felids, while ESR was similar across felids with domestic cats exhibiting the highest number of genera. Diet partitioning occurred among felids, but domestic cats may compete with ocelot and jaguarundi for small prey. Outside of protected areas, large cats shifted their diet to smaller prey and livestock remains were not found. Contrary to our hypotheses, FGM and ESR did not differ inside versus outside protected areas, but sample sizes were low in human-modified areas. We provide a baseline on wild felid adrenal activity, endoparasites and diet and suggest improvements to increase sample sizes outside protected areas. Our research provides a template for expanding non-invasive sampling approaches more widely across the range of Neotropical felids.

What factors are related to establishment dynamics following disturbance in late-successional versus second-growth tropical forests of the Pacific islands? Are those relationships robust to interannual fluctuations in establishment? In three sites juveniles were enumerated in 30 (5 × 5-m) subplots within 45 × 50-m tree plots in 2004 and 2005, 2.5 and 3.5 y following a Category-3 tropical cyclone (hurricane), in the Vava'u Island Group, Kingdom of Tonga. Recruitment was almost three-fold greater in the second sample period. Spatial pattern of focal species density was related to density of other juveniles, proximity of conspecific adults and canopy cover in the two years using Seemingly Unrelated Regression. Shade-tolerant species were the most abundant recruits in late-successional sites, establishing near-conspecific adults and other juveniles, while shade-establishing species were recruiting in gaps in second-growth forest where they also constitute the canopy trees. This pattern, observed in both years, reinforces divergent successional trajectories for second-growth and late-successional forest.

Plant invasions in tropical agricultural landscapes have been poorly studied so far. Here, we use plot data collected in 2015 in the La Gamba valley in southern Costa Rica to analyse the spread of two invasive alien species (Hydrilla verticillata, Hedychium coronarium) on the landscape level. In total, we recorded the aquatic H. verticillata, which was locally introduced into the La Gamba valley in 2005, in 26% of all plots (size: 15 m2), while H. coronarium, which occurs along water courses, was recorded in 80% of all plots (size: 25 m2). Generalized Linear Models (GLMs) showed that the habitat type invaded and shading had no significant effect on H. verticillata presence and abundance. However, proximity to the point of local introduction and habitat diversity in the adjacent landscape did positively affect its presence. For H. coronarium, GLMs showed a significant correlation with the invaded habitat type. The probability of H. coronarium presence was highest in herbaceous vegetation and cover was higher compared with other habitats. There was no effect on native plant species richness and cover by H. verticillata, while H. coronarium exerted a negative impact on herbaceous plant species number and, in particular, cover. Hydrilla verticillata is a rather recent addition to the local alien flora, and thus dispersal limitation still restricts its local range. Compared with observed rates of spread in other regions, spread velocity within the first decade of its local presence was low. In contrast, H. coronarium has been locally present for a substantially longer time period. This species encounters suitable habitat conditions in herbaceous vegetation along water courses, where it builds up dense clonal stands which negatively affect herbaceous vegetation. Our results show that while both study species are invasive in Central American lowlands, their local abundance and impacts on native vegetation may differ profoundly.

The study of altitudinal gradients has made enduring contributions to the theoretical and empirical bases of modern biology. Unfortunately, the persistence of these systems and the species that compose them is threatened by land-use change at lower altitudes and by climate change throughout the gradients, but especially at higher altitudes. In this review, we focus on two broad themes that are inspired by altitudinal variation in tropical montane regions: (1) dimensions of biodiversity and (2) metacommunity structure. Species richness generally decreased with increasing altitude, although not always in a linear fashion. Mid-altitudinal peaks in richness were less common than monotonic declines, and altitudinal increases in richness were restricted to amphibian faunas. Moreover, gradients of biodiversity differed among dimensions (taxonomic, phylogenetic and functional) as well as among faunas (bats, rodents, birds) in the tropical Andes, suggesting that species richness is not a good surrogate for dimensions that reflect differences in the function or evolutionary history of species. Tropical montane metacommunities evinced a variety of structures, including nested (bats), Clementsian (rodents, bats, gastropods), quasi-Clementsian (reptiles, amphibians, passerines) and quasi-Gleasonian (gastropods) patterns. Nonetheless, compositional changes were always associated with the ecotones between rain forest and cloud forest, regardless of fauna.

Herbivores are predicted to forage on a variety of plants in order to obtain a nutritionally sufficient diet. Most herbivores, however, forage non-randomly and may be influenced by morphological, chemical and physical traits in their food. We examined the influence of several leaf traits on food selection for the Exuma rock iguana (Cyclura cychlura figginsi). We expected the iguana to prefer leaves with higher nutrient concentration and lower physical defences, such as reflected by high N, P, Ca, K, Mg concentrations and low leaf density and per cent concentrations of cellulose, hemicellulose and lignin, respectively. We quantified selection by examining 30 faecal samples and analysing traits of leaves from the 10 most common plants on the island. Our results showed substantial variability in all measured traits among species but food preference only for less-dense leaves, a good indicator of low leaf toughness. Our results are the first to demonstrate that physical leaf traits can influence food selection in a true herbivorous lizard and offer a basis for future testing.

The Virginia opossum (Didelphis virginiana) is considered highly adaptable to anthropogenic disturbances; however, the genetic effects of disturbance on this marsupial have not been studied in wild populations in Mexico. Here we evaluated the genetic diversity of D. virginiana at sites with different levels of disturbance within the Highlands and Central Depression regions of Chiapas in southern Mexico. Twelve microsatellite loci were used and the results demonstrated moderate mean heterozygosity (He = 0.60; Ho = 0.50). No significant differences in heterozygosity were found among sites with different levels of disturbance in both regions (range Ho = 0.42–0.57). We observed low but significant levels of genetic differentiation according to disturbance level. The inbreeding coefficient did not differ significantly from zero, suggesting that low genetic differentiation in these environments may be associated with sufficient random mating and gene flow, a result associated with the high dispersal and tolerance characteristics of this marsupial. Our results for D. virginiana in this particular area of Mexico provide a foundation for exploring the impact of human disturbance on the genetic diversity of a common and generalist species.

Ant–treehopper mutualisms are centred on the availability of honeydew, a sugary fluid offered by treehoppers to attract ants, which respond by defending their hosts against predators and parasitoids. However, due to differences in the treehopper social behaviour (i.e. the amount of food resource available) ants can monopolize treehopper aggregations in many ways. Here we evaluated the topological structure of quantitative ant–treehopper interaction networks in three Brazilian Atlantic Forest localities. Moreover, we specifically investigated the role of ant recruitment strategy and treehopper behaviour in the structure of these networks. For this, we sampled ant–treehopper interactions along representative transects (6 km per site) within each studied site and recorded the mean number of individuals of treehopper and ant species. We found that independent of variation in environmental factors among study sites, ant–treehopper networks were highly compartmentalized (Mean ± SD: Q = 0.34 ± 0.1) when compared with null models, and exhibit low connectance (C = 0.18 ± 0.01) and specialization (H2’ = 0.36 ± 0.08) values. In addition, we also observed that larger aggregations of treehoppers interacted with a higher number of ant species and ants that were locally dominant and showed massive recruitment interacted with a larger number of treehopper species. In summary, our results illustrate the importance of foraging strategies in shaping ecological interactions in tropical environments.

Seed-dispersal ecology in tropical montane forests (TMF) differs in some predictable ways from tropical lowland forests (TLF). Environmental, biogeographic and biotic factors together shape dispersal syndromes which in turn influence forest structure and community composition. Data on diaspore traits along five elevational gradients from forests in Thailand, the Philippines, Tanzania, Malawi and Nigeria showed that diaspore size decreases with increasing altitude, fleshy fruits remain the most common fruit type but the relative proportion of wind-dispersed diaspores increases with altitude. Probably corresponding to diaspore size decreasing with increasing elevation, we also provide evidence that avian body size and gape width decrease with increasing altitude. Among other notable changes in the frugivorous fauna across elevational gradients, we found quantitative evidence illustrating that the proportion of bird versus mammalian frugivores increases with altitude, while TMF primates decrease in diversity and density, and switch diets to include less fruit and more leaf proportionately. A paucity of studies on dispersal distance and seed shadows, the dispersal/predation balance and density-dependent mortality thwart much-needed conclusive comparisons of seed dispersal ecology between TMF and TLF, especially from understudied Asian forests. We examine the available evidence, reveal knowledge gaps and recommend research to enhance our understanding of seed dispersal ecology in tropical forests. This review demonstrates that seed dispersal is a more deterministic and important process in tropical montane forests than has been previously appreciated.

Frogs are known to occasionally utilize the burrow systems of subterranean rodents, but this phenomenon has previously attracted little attention. We recorded frogs in burrows and in/under the molehills of three African mole-rat species (Bathyergidae, Rodentia) during burrow system mapping in Malawi and Zambia during the dry season. Eight frog species were detected. The most abundant of them, Kassina senegalensis, was found in large numbers in active Ansell's mole-rat nest areas, obviously tolerated by the hosts. We speculate that in areas with prolonged dry seasons mole-rats may increase anuran abundances and diversity.

Non-native species impact tropical ecosystems, but the role of different anthropogenic disturbances on the success of non-natives remains unclear, especially in island tropical forests. We sought to understand the influence of anthropogenic habitat degradation and disturbance on non-native plant species in Madagascar. Specifically, we evaluated how densities of non-native species of woody shrub (Lantana camara), climber (Mucuna pruriens) and tree (Mangifera indica, Albizia lebbeck, Tamarindus indica) varied with forest habitat degradation and by disturbance type. We surveyed 60400 m2, recording 482 instances of disturbance and 903 non-native plants in and around the Ankarana National Park. Non-native plant densities were higher in degraded than primary forest. Within degraded forest, densities of non-native trees increased with disturbance. Tree densities correlated with extent of tree damage only in Tamarindus indica, never correlated with extent of tree removal, and always correlated with proximity to roads and trails. Our results suggest roads and trails have relatively greater importance in facilitating the success of non-native tree species than structural changes to habitat. In contrast, densities of Lantana camara and Tamarindus indica did not correlate with any measured type of disturbance; other unmeasured or historical factors may be more important drivers of these smaller, faster-reproducing species.