Enteric and respiratory diseases are the most frequent health disorders of calves. They are associated with mortality or lower growth rate and induce treatment costs. Enteric and respiratory pathogens can be transmitted via contacts between calves, which depend on calf housing systems and management. This study aimed at describing the main calf housing systems across Europe and at assessing the consequences of such housing facilities in terms of risk for calf infectious diseases. This was done through the use of a questionnaire distributed to experts in epidemiology and cattle farming systems in each European country. A literature review was performed on the risk factors associated with calf infectious diseases transmission and targeted in the questionnaire. Answers from 14 countries were obtained. A wide range of housing systems were described. However, four main systems could be identified and ranked in ascending order of risk for neonatal diarrhoea and respiratory infectious diseases: individual pen until weaning, individual pen for 4 weeks, individual pen for 2 weeks, and collective pen from the separation of the calf with its dam. Although the housing systems are known to play a role in disease transmission, they are currently not fully described in literature concerning risk factors for calf infectious diseases. In a given farm, the risk assessment for calf infectious diseases should consider classical risk factors such as hygiene, feeding practices and air conditioning, on top of a precise description of the housing system.

Domestic ruminant selectivity induces floristic changes in pasturelands, risking sustainability and limiting the subsequent availability of susceptible plant species. Development of preferences for species of lower nutritional quality may help to overcome those problems. In this study, we tested the hypothesis that early experience of sheep with a low-quality food (LQF) in a nutritional enriched context increases preference for LQF in adulthood. We predicted a higher proportional consumption of LQF in experienced lambs (EL) than in inexperienced lambs (IL) in choice situations involving LQF and alternative foods. Additionally, we determined intake of LQF by EL and IL at different levels of high-quality food (HQF) availability. From 60 to 210 days of age, EL were fed in separated feed bunks mature oat hay (LQF) simultaneously with sunflower meal (SM) and corn grain (CG), whereas IL were fed alfalfa hay (HQF) simultaneously with SM and CG. After exposure, EL and IL were offered LQF in free choice situations involving alternative foods, and also at five levels of HQF availability (100%, 75%, 50%, 25% and 0% of ad libitum intake). Proportional consumption of LQF was lower or similar in EL than IL. Intake of LQF was also lower or similar in EL than IL at all levels of HQF availability, except when the LQF was the only food available. Our results did not support the hypothesis that early experience with a LQF in a nutritional enriched context increases preference for LQF in adulthood. On the contrary, experience with LQF diminished subsequent preference for LQF in adulthood. It is proposed that, in the conditions of our study, continuous comparison between the LQF and the high-quality supplements (CG and SM) during the early exposure period lead to devaluation of LQF by EL through a simultaneous negative contrast effect.

Anthropogenic pollutants comprise a wide range of synthetic organic compounds and heavy metals, which are dispersed throughout the environment, usually at low concentrations. Exposure of ruminants, as for all other animals, is unavoidable and while the levels of exposure to most chemicals are usually too low to induce any physiological effects, combinations of pollutants can act additively or synergistically to perturb multiple physiological systems at all ages but particularly in the developing foetus. In sheep, organs affected by pollutant exposure include the ovary, testis, hypothalamus and pituitary gland and bone. Reported effects of exposure include changes in organ weight and gross structure, histology and gene and protein expression but these changes are not reflected in changes in reproductive performance under the conditions tested. These results illustrate the complexity of the effects of endocrine disrupting compounds on the reproductive axis, which make it difficult to extrapolate between, or even within, species. Effects of pollutant exposure on the thyroid gland, immune, cardiovascular and obesogenic systems have not been shown explicitly, in ruminants, but work on other species suggests that these systems can also be perturbed. It is concluded that exposure to a mixture of anthropogenic pollutants has significant effects on a wide variety of physiological systems, including the reproductive system. Although this physiological insult has not yet been shown to lead to a reduction in ruminant gross performance, there are already reports indicating that anthropogenic pollutant exposure can compromise several physiological systems and may pose a significant threat to both reproductive performance and welfare in the longer term. At present, many potential mechanisms of action for individual chemicals have been identified but knowledge of factors affecting the rate of tissue exposure and of the effects of combinations of chemicals on physiological systems is poor. Nevertheless, both are vital for the identification of risks to animal productivity and welfare.

Intramuscular fat (IMF) content plays a key role in various quality traits of meat. IMF content varies between species, between breeds and between muscle types in the same breed. Other factors are involved in the variation of IMF content in animals, including gender, age and feeding. Variability in IMF content is mainly linked to the number and size of intramuscular adipocytes. The accretion rate of IMF depends on the muscle growth rate. For instance, animals having a high muscularity with a high glycolytic activity display a reduced development of IMF. This suggests that muscle cells and adipocytes interplay during growth. In addition, early events that influence adipogenesis inside the muscle (i.e proliferation and differentiation of adipose cells, the connective structure embedding adipocytes) might be involved in interindividual differences in IMF content. Increasing muscularity will also dilute the final fat content of muscle. At the metabolic level, IMF content results from the balance between uptake, synthesis and degradation of triacylglycerols, which involve many metabolic pathways in both adipocytes and myofibres. Various experiments revealed an association between IMF level and the muscle content in adipocyte-type fatty acid-binding protein, the activities of oxidative enzymes, or the delta-6-desaturase level; however, other studies failed to confirm such relationships. This might be due to the importance of fatty acid fluxes that is likely to be responsible for variability in IMF content during the postnatal period rather than the control of one single pathway. This is evident in the muscle of most fish species in which triacylglycerol synthesis is almost zero. Genetic approaches for increasing IMF have been focused on live animal ultrasound to derive estimated breeding values. More recently, efforts have concentrated on discovering DNA markers that change the distribution of fat in the body (i.e. towards IMF at the expense of the carcass fatness). Thanks to the exhaustive nature of genomics (transcriptomics and proteomics), our knowledge on fat accumulation in muscles is now being underpinned. Metabolic specificities of intramuscular adipocytes have also been demonstrated, as compared to other depots. Nutritional manipulation of IMF independently from body fat depots has proved to be more difficult to achieve than genetic strategies to have lipid deposition dependent of adipose tissue location. In addition, the biological mechanisms that explain the variability of IMF content differ between genetic and nutritional factors. The nutritional regulation of IMF also differs between ruminants, monogastrics and fish due to their digestive and nutritional particularities.

Finding ways of increasing the efficiency of production systems is a key issue of sustainability. System efficiency is based on long-term individual efficiency, which is highly variable and management driven. To study the effects of management on herd and individual efficiency, we developed the model simulation of goat herd management (SIGHMA). This dynamic model is individual-based and represents the interactions between technical operations (relative to replacement, reproduction and feeding) and individual biological processes (performance dynamics based on energy partitioning and production potential). It simulates outputs at both herd and goat levels over 20 years. A farmer’s production project (i.e. a targeted milk production pattern) is represented by configuring the herd into female groups reflecting the organisation of kidding periods. Each group is managed by discrete events applying decision rules to simulate the carrying out of technical operations. The animal level is represented by a set of individual goat models. Each model simulates a goat’s biological dynamics through its productive life. It integrates the variability of biological responses driven by genetic scaling parameters (milk production potential and mature body weight), by the regulations of energy partitioning among physiological functions and by responses to diet energy defined by the feeding strategy. A sensitivity analysis shows that herd efficiency was mainly affected by feeding management and to a lesser extent by the herd production potential. The same effects were observed on herd milk feed costs with an even lower difference between production potential and feeding management. SIGHMA was used in a virtual experiment to observe the effects of feeding strategies on herd and individual performances. We found that overfeeding led to a herd production increase and a feed cost decrease. However, this apparent increase in efficiency at the herd level (as feed cost decreased) was related to goats that had directed energy towards body reserves. Such a process is not efficient as far as feed conversion is concerned. The underfeeding strategy led to production decrease and to a slight feed cost decrease. This apparent increase in efficiency was related to goats that had mobilised their reserves to sustain production. Our results highlight the interest of using SIGHMA to study the underlying processes affecting herd performance and analyse the role of individual variability regarding herd response to management. It opens perspectives to further quantify the link between individual variability, herd performance and management and thus further our understanding of livestock farming systems.

Prompted by current concerns about energy resources and greenhouse gas emissions, we sought to assess the impact of certain key factors on energy efficiency in sheep-for-meat production and to evaluate the main directions for improvement. We used a modelling approach to simulate the functioning and performances of sheep-for-meat production systems integrating an energy balance calculation module. In the first step of this study, we reconstructed system functions and technical and economic results of four typological groups of farms in plainland areas. This served as a basis for calculating their energy efficiency in order to focus on the main factors of energy efficiency, such as high levels of fodder self-sufficiency (low concentrate consumption) and high ewe productivity. The Graze system presented the highest energy efficiency (EE) for sheep unit (EEs = 0.62) with the lowest consumption of equivalent fuel litres requirements (FuReq) per kilogram of lamb carcass produced (1.47), while the ‘sheep and cash crop’ system had the lowest EEs (0.36) and the highest FuReq per kg carcass (2.54). We then took the ‘mixed-farming system’ (a 130 ha farm, including 610 ewes and 40 ha of cropland) and studied three adaptations designed to increase the EEs: improvement of feed self-sufficiency (increased proportion of concentrate produced on-farm), introduction of legumes into the rotation (removal of bought-in nitrogen fertilisers), and production of fuel-oil (from rapeseed) with the flock using oil cakes. The most effective adaptation was the removal of the nitrogen fertilisers. The successive adaptations make it possible to cut energy consumption from 2.2 FuReq/kg carcass down to 0.98 after the optimisations, thereby increasing EEs from 0.42 to 0.93. Finally, we went on to study the energy impact of four factors influencing flock functioning and farm structure, i.e. ewe productivity, lamb weight, distances between plots, and flock size. Ewe productivity and lamb weight had a strong positive impact on EEs. When ewe productivity switched from 0.80 to 1.70, EEs increased from 0.29 to 0.48 while FuReq per kilogram carcass dropped from 3.39 to 1.88. When flock size was increased to over 1000 ewes, there were little or no energy-related economies of scale, as farm area also increased and most of the systems required more equipment.

Iodine and selenium are essential trace elements involved in the regulation of thyroid metabolism and antioxidant status. Two experiments were undertaken on lactating cows to determine the milk concentrations of iodine and selenium, carry over (CO) in milk, the fraction in curdle portion and how milk yield affects the milk iodine and selenium concentrations and CO. Sources of elements were potassium iodide and sodium selenite. In Experiment 1, 12 cows were randomly allotted to three diet groups in a completely randomized design: control group (CTR) – total mixed ration (TMR) containing 1.71 and 0.08 mg/kg dry matter (DM); Group 1 (T1) – TMR plus 23.8 and 2.2 mg; Group 2 (T2) – TMR plus 45.5 and 4.3 mg, respectively, for iodine and selenium. In Experiment 2, 30 cows were allotted to three groups according to milk yield: high (H), average (A) and low (L). Within each group, cows were randomly assigned two levels of iodine and selenium: Level 1: TMR containing 1.55 and 0.15 mg/kg DM; Level 2: TMR plus 47.2 mg and 8.0 mg, respectively, iodine and selenium. In both experiments, individual milk samples were collected and analyzed for iodine and selenium contents. In Experiment 1, Grana Padano cheese was obtained at lab scale and the iodine and selenium fractions in the curd were measured. In Experiment 1, the iodine intake increased (P < 0.001) the concentration and total excretion in milk. The CO increased (P < 0.05) from 16 (CTR) to 27 (T1) and 26% (T2); the sampling time was significant (P < 0.05) with no interaction with treatments. Concentration of selenium in milk was increased (P < 0.05) by treatment and CO decreased (P < 0.01) from 26 (CTR) to 12 (T1) and 9% (T2). The iodine showed a mild enrichment factor in the curdle (about 1.7-fold), whereas selenium enriched five- to sevenfold. In Experiment 2, the level of iodine supplementation affected (P < 0.05) the concentration and total excretion in milk. No effects on milk iodine concentration were related to milk yield or milk yield × treatment interaction; however, the iodine excretion in milk was major (P < 0.05) in higher yielding groups. The iodine CO was affected (P < 0.05) by the milk yield in supplemented groups. The selenium milk concentration and excretion were affected (P < 0.01) by the milk yield, whereas the CO was affected (P < 0.05) by the milk yield and selenium supplementation. Results highlight the possibility of fortification with iodine in milk and selenium in cheese through animal feeding.

Nutrition is an important aspect of welfare, and in most recommendations for the welfare of animals adequate nutrition is a primary requirement. However, in intensive livestock production systems the decision for adequate nutrition is made based on traditional paradigms of feeding monotonous rations or plant monocultures, frequently with excesses or imbalances of nutrients relative to the individuals’ physiology, which can compromise welfare. Individual ruminants can better meet their needs for nutrients and regulate their intake of secondary compounds when offered a variety of foods than when constrained to a single food, even if the food is nutritionally balanced. The concept of food variety is central because monotonous flavors and feeds and excess nutrients all cause animals to satiate, which in turn causes animals to eat a variety of foods. When offered a variety of foods, satiety for single foods stimulates the selection of a diverse diet and thus food intake, but when restricted to a monotonous diet satiety is aversive and limits food intake. Moreover, if a monotonous diet is aversive to animals then this could be stressful, even if monotony implies consuming a balanced diet. A diverse diet may also increase resistance to disease in ruminants, by allowing consumption of small amounts of compounds with antimicrobial/antiparasitic effects and immunity-enhancing properties. Herbivores also experience the benefits of ingesting compounds with medicinal (i.e. antiparasitic) benefits and they learn to prefer foods containing such compounds as their preferences are associatively conditioned by the food’s homeostatic utility to the body. Such learned patterns of behavior begin in utero and feeding experiences early in life cause changes – neurological, morphological and physiological – in animals, which influence on their subsequent behavior and welfare. Such experiences with the environment enable animals to adapt to local diets and stressors and reduce the levels of fear. Finally, feeding behavior in farm animals could be an aid in the early detection and mitigation of pain or sickness, and as such become an important tool in the identification of welfare and health of animals before the appearance of clinical signs. Management strategies in ruminant production systems could benefit by allowing animals to manifest their feeding preferences, thereby acknowledging the animals’ role as active players in feeding systems, instead of regarding them as passive entities that just respond to prescriptions and formulations.

Housing conditions for horses impose various levels of confinement, which may compromise welfare. Lying behaviour and activity can be used as welfare indicators for domestic animals and rebound behaviour suggests a build-up of motivation resulting from deprivation. The objective of this study was to determine if activity and lying behaviour of horses are affected by housing conditions and to investigate the occurrence of rebound behaviour after release from confinement. Eight horses were subjected, in pairs, to each of four experimental treatments; paddock (P), fully stabled (FS), partly stabled (PS) and yard (Y). Each horse received 6 days acclimatisation prior to the 24 h recording period. Time spent in lying and activity were electronically recorded using a tilt switch and motion sensor connected to a data logger worn on the horse’s left foreleg. Time spent active during the first 5 min of release from stable to paddock in the PS treatment (days 1 and 5) and at the same time of day in the P treatment was used as a measure of rebound behaviour. Effect of housing conditions on total time spent active was highly significant (FS = 123 s, PS = 158 s, Y = 377 s, P = 779 s, P < 0.001). Housing conditions did not significantly affect total time spent lying (P = 0.646). Horses were significantly more active, compared with baseline paddock behaviour, on release from stabling on both days 1 (P = 0.006) and 5 (P = 0.025) of PS treatment. These results suggest that activity patterns of horses, but not lying behaviour, are affected by the housing conditions tested and that rebound activity occurs in horses after a period of confinement.

The main aim was to assess the impact of mastitis on technical and economic results of a dairy herd under current Swedish farming conditions. The second aim was to investigate the effects obtained by withdrawing milk with high somatic cell count (SCC). A dynamic and stochastic simulation model, SimHerd, was used to study the effects of mastitis in a herd with 150 cows. Results given the initial incidence of mastitis (32 and 33 clinical and subclinical cases per 100 cow-years, respectively) were studied, together with the consequences of reducing or increasing the incidence of mastitis by 50%, modelling no clinical mastitis (CM) while keeping the incidence of subclinical mastitis (SCM) constant and vice versa. Six different strategies to withdraw milk with high SCC were compared. The decision to withdraw milk was based on herd-level information in three scenarios: withdrawal was initiated when the predicted bulk tank SCC exceeded 220 000, 200 000 or 180 000 cells/ml, and on cow-level information in three scenarios: withdrawal was initiated when the predicted SCC in an individual cow’s milk exceeded 1 000 000, 750 000 or 500 000 cells/ml. The accuracy with which SCC was measured and predicted was assumed to affect the profitability of withdrawing milk with high SCC and this was investigated by applying high, low or no uncertainty to true SCC. The yearly avoidable cost of mastitis was estimated at €8235, assuming that the initial incidence of mastitis could be reduced by 50%. This cost corresponded to 5% of the herd net return given the initial incidence of mastitis. Expressed per cow-year, the avoidable cost of mastitis was €55. The costs per case of CM and SCM were estimated at €278 and €60, respectively. Withdrawing milk with high SCC was never profitable because this generated a substantial amount of milk withdrawal that was not offset by a sufficient increase in the average price per delivered kg milk. It had the most negative impact on net return when high incidence of mastitis was simulated. Withdrawing milk with high SCC based on low-uncertainty information reduced the amount of withdrawn milk and thus resulted in less negative effect on net return. It was concluded that the current milk-pricing system makes it more profitable for farmers to sell a larger amount of milk with higher SCC than to withdraw milk with high SCC to obtain payment premiums, at least in herds with mastitis incidences within the simulated ranges.

A study was carried out on six hill farms, located in the main hill regions of Northern Ireland, over three breeding seasons to investigate the effect of sire breed on ewe dystocia, lamb survival and weaned lamb output. On each farm, groups of 26 to 40 purebred Scottish Blackface ewes (n = 3174) were crossed with Blackface, Swaledale, North Country Cheviot, Lleyn and Texel sires by natural service (year 1) and artificial insemination (years 2 and 3). Each of the mating groups was initially balanced for ewe age, live weight and condition score, and a total of 15 sires of each breed were used over the 3 years. In total, 2272 ewes were recorded at lambing, producing 3451 lambs, over the 3 years. Sire breed had a significant effect (P < 0.001) on lamb birth weight with Blackface and Swaledale the lowest and Texel the highest. The proportion of ewes with dystocia was higher with Texel sires compared with Lleyn, Swaledale and Blackface sires (P < 0.05). Ewes mated to Cheviot sires had more dystocia than those mated to Blackface and Swaledale sires (P < 0.05), while ewes mated to Lleyn sire breed had more dystocia (P < 0.05) than those mated to Blackface sire breed. Most of the incidence of dystocia was attributable to increased lamb birth weight (P < 0.001), and some to litter size (P < 0.05). Swaledale, Cheviot, Lleyn and Texel sire breeds increased the incidence of malpresentations (P < 0.05). Lamb live weight at weaning was higher with Texel- and Cheviot- and Lleyn-sired lambs compared with Blackface- and Swaledale-sired lambs (P < 0.01). The level of lamb mortality at birth was not affected by sire breed. However, lamb mortality at weaning was lower for Lleyn-sired lambs compared with the other lamb genotypes (P < 0.05). These results indicate that the use of sires from larger breeds, such as Lleyn and Texel, within the Blackface ewe flocks can increase lamb output, with no apparent detrimental effects on lamb mortality or ewe survival, but increased assistance at lambing will be required.

The aim of this study was to evaluate the effectiveness of a gonadotropin-releasing hormone (GnRH) vaccine, Improvac™ (Pfizer Ltd), in suppressing aggressive and sexual behaviour of male pigs. One hundred and thirty-six pigs were assigned to three treatments: entire male pigs (n = 64), immunocastration against GnRH (n = 48) and surgical castration (n = 24). Surgical castration was performed before the age of 1 week. Vaccination comprised two injections: the first injection was given 8 to 11 weeks before slaughter and the second injection 4 weeks before slaughter. After the second injection, immunocastrated pigs showed less non-violent social and aggressive behaviours than entire male pigs of the same age. Mounting was reduced to the same low level as observed in surgically castrated pigs, and more immunocastrated pigs were without skin lesions compared with entire male pigs. Pigs that received the second injection only 1 week before the observation day did not differ significantly in behaviour from those that received the injection 3 weeks before the observation day. Thus, the behaviour seems to change soon after the second injection and these changes remain until slaughter.

The feed efficiency of ruminant meat and dairy livestock can be significantly influenced by factors within their living environments. In particular, events perceived by the animals as stressful (such as parturition, transport or handling) have been found to affect susceptibility to infection. It has been well documented that even minor stress such as weighing can result in an increase in colonisation and faecal shedding of enteric pathogens such as Salmonella enterica and Escherichia coli O157:H7. Such infections affect both ruminant overall health and therefore performance, and are a particular problem for the meat production industries. Prior explanations for stress enhancing the likelihood of infection is that activation of the sympathetic nervous system under stress leads to the release of neuroendocrine mediators such as the catecholamine stress hormones noradrenaline and adrenaline, which may impair innate and adaptive immunity. More recently, however, another equally compelling explanation, viewed through the lens of the newly recognised microbiological discipline of microbial endocrinology is that the myriad of bacteria within the ruminant digestive tract are as responsive to the hormonal output of stress as the cells of their host. Work from our laboratories has shown that enteric pathogens have evolved systems for directly sensing stress hormones. We have demonstrated that even brief exposure of enteric pathogens to physiological concentrations of stress hormones can result in massive increases in growth and marked changes in expression of virulence factors such as adhesins and toxins. Happy, less stressed ruminants may therefore be better-nourished animals and safer sources of meat. This article reviews evidence that stress, as well as affecting nutrition, in ruminants is correlated with increased risk of enteric bacterial infections, and examines the molecular mechanisms that may be at work in both processes.