Mastitis is an inflammatory disease of the mammary gland, which has a significant economic impact and is an animal welfare concern. This work examined the association between single nucleotide polymorphisms (SNPs) and copy number variations (CNVs) with the incidence of clinical mastitis (CM). Using information from 16 half-sib pairs of Holstein-Friesian cows (32 animals in total) we searched for genomic regions that differed between a healthy (no incidence of CM) and a mastitis-prone (multiple incidences of CM) half-sib. Three cows with average sequence depth of coverage below 10 were excluded, which left 13 half-sib pairs available for comparisons. In total, 191 CNV regions were identified, which were deleted in a mastitis-prone cow, but present in its healthy half-sib and overlapped in at least nine half-sib pairs. These regions overlapped with exons of 46 genes, among which APP (BTA1), FOXL2 (BTA1), SSFA2 (BTA2), OTUD3 (BTA2), ADORA2A (BTA17), TXNRD2 (BTA17) and NDUFS6 (BTA20) have been reported to influence CM. Moreover, two duplicated CNV regions present in nine healthy individuals and absent in their mastitis-affected half-sibs overlapped with exons of a cholinergic receptor nicotinic α 10 subunit on BTA15 and a novel gene (ENSBTAG00000008519) on BTA27. One CNV region deleted in nine mastitis-affected sibs overlapped with two neighbouring long non-coding RNA sequences located on BTA12. Single nucleotide polymorphisms with differential genotypes between a healthy and a mastitis-affected sib included 17 polymorphisms with alternate alleles in eight affected and healthy half-sib families. Three of these SNPs were located introns of genes: MET (BTA04), RNF122 (BTA27) and WRN (BTA27). In summary, structural polymorphisms in form of CNVs, putatively play a role in susceptibility to CM. Specifically, sequence deletions have a greater effect on reducing resistance against mastitis, than sequence duplications have on increasing resistance against the disease.

Many studies have shown that milk fat globule (MFG) diameter varies in dairy cows in relation to diet and/or breed. However, the mechanisms governing the size of the fat globules remain hypothetical. Our objective was to determine the variable biochemical characteristics (fat, protein, fatty acids (FA), casein and calcium (Ca) contents) between individual milk which differed in both MFG diameter and membrane content, in order to speculate about the links between milk synthesis and MFG secretion. With this aim, we built five databases of individual milk samples from 21 experiments performed between 2003 and 2011. Three of them grouped data from trials dealing with breed/diet effects and included information about: (i) MFG size/membrane, fat and protein contents (n=982), (ii) previous parameters plus FA profile (n=529) and (iii) previous parameters plus true protein composition and calcium contents (n=101). A hierarchical clustering analysis performed on these three databases yielded four groups differing in the MFG characteristics. We observed significant differences among groups for the following parameters: (i) fat content and fat : protein ratio; (ii) de novo and polyunsaturated FA contents; (iii) Ca contents. These relationships could result from potential process regulating the synthesis and secretion of MFG: (i) the apical membrane turnover for MFG secretion and (ii) cytoplasmic lipid droplet formation in the lactocyte during its migration from the basal to the apical pole. The two other databases grouped data from trials dealing with milking frequency (n=211), milking kinetics and milk type (residual v. cisternal) (n=224). They were used to study the relationships between the size of the MFG and milk composition for high native fat contents (from 60 up to 100 g/kg in residual milks). We observed curvilinear relationships between the size of the MFG and fat content, as well as with the fat : protein ratio. This result suggests that MFG diameter reaches a threshold but mechanisms are still unknown.

MicroRNAs (miRNAs) are a class of small non-coding RNAs that negatively regulate gene expression of target messenger RNAs (mRNAs) and miRNAs have been proven to play vital roles in skeletal muscle development. The miRNA-499-5p has been reported to be negatively related with the expression of Sox6, a critical transcription factor for the maintenance of fast-twitch skeletal muscle. In this study, we amplified a length of 2012-bp mRNA that contains a 1512-bp porcine Sox6 (pSox6) 3'UTR from skeletal muscle of a Duroc×Landrace×Yorkshire pig. By luciferase reporter assay we verified that pSox6 is a target of miR-499-5p. In extensor digitorum longus and Soleus muscles of pigs, the expression levels of miR-499-5p and pSox6 mRNA were also inversely correlated. Besides, overexpression of miR-499-5p in porcine satellite cells promoted the expression of MyHC I and MyHC IIa mRNA, along with a reduction of pSox6 mRNA. Taken together, these results indicate that miR-499-5p may facilitate the oxidative myofibers formation by downregulating pSox6 expression.

This study assesses the utility of saliva samples to monitor the time course of the acute-phase response to different viruses in pigs under field conditions by using time-resolved immunofluorometric assays (TR-IFMA). A total of 30 pigs from three different farms, located in Southeast Spain, were used. Farm 1 had outbreaks of porcine circovirus type 2, farm 2 had infections with porcine reproductive and respiratory syndrome virus and farm 3 had concomitant infections with both viruses. Serology was used to determine the time of seroconversion of pigs to two different pathogens. The levels of two acute-phase proteins (APPs), C-reactive protein (CRP) and haptoglobin (Hp), were measured in saliva and serum samples and compared with pig's serology. Kinetic curves of both APPs across the study obtained in saliva samples were similar to those of serum, with R of 0.68 and 0.78 for CRP and Hp, respectively. The median CRP and Hp concentrations in saliva were higher around the theorized time of infection, according to previous experimental studies, and at seroconversion of animals. CRP increments were apparent 1 week before the increments obtained in Hp. These findings indicate that salivary APP concentrations, by using TR-IFMA, can be used in longitudinal studies as non-invasive early indicators of health status.

Genetically reducing boar taint using low-taint lines is considered the most sustainable and economic long-term alternative to surgical castration of male pigs. Owing to the high heritability of the main boar taint components (androstenone, skatole and indole), breeding is an excellent tool for reducing the number of tainted carcasses. To incorporate boar taint into breeding programmes, standardized performance testing is required. The objective of this study was to develop and formally present a performance test for the main boar taint compounds on live breeding candidates. First, a standardized performance test for boar taint was established. A biopsy device was developed to extract small tissue samples (200 to 300 mg) from breeding candidates. Quantification of boar taint components from these small samples using specialized chemical extraction methods proved accurate and repeatable (r = 0.938). Following establishment of the method, biopsy samples of 516 live boars (100 to 130 kg live weight) were collected in the second step. Various mixed linear models were tested for each boar taint compound; models were ranked in terms of their information content. Pedigree information of 2245 ancestors of biopsied animals was included, and genetic parameters were estimated using univariate and multivariate models. Androstenone (in μg/g liquid fat (LF): mean = 0.578, σ = 0.527), skatole (in μg/g LF: mean = 0.033, σ = 0.002) and indole (in μg/g LF: mean = 0.032, σ = 0.002) levels obtained by biopsy were plausible. Heritability estimates for androstenone calculated with univariate (0.453) and multivariate (0.452) analyses were comparable to those in the literature. Heritabilities for skatole (0.495) and indole (0.550) were higher than that for androstenone. Genetic and phenotypic correlations were similar to those published previously. Our results show that data on boar taint compounds from small adipose samples obtained by biopsy provide similar genetic parameters as that described in the literature for larger samples and are therefore a reliable performance test for boar taint in live breeding candidates.

Enhancing the quality of beef meat is an important goal in terms of improving both the nutritional value for the consumer and the commercial value for producers. The aim of this work was to study the effects of different vegetable oil supplements on growth performance, carcass quality and meat quality in beef steers reared under intensive conditions. A total of 240 Blonde D’ Aquitaine steers (average BW=293.7±38.88 kg) were grouped into 24 batches (10 steers/batch) and were randomly assigned to one of the three dietary treatments (eight batches per treatment), each supplemented with either 4% hydrogenated palm oil (PALM) or fatty acids (FAs) from olive oil (OLI) or soybean oil (SOY). No differences in growth performance or carcass quality were observed. For the meat quality analysis, a steer was randomly selected from each batch and the 6th rib on the left half of the carcass was dissected. PALM meat had the highest percentage of 16:0 (P<0.05) and the lowest n-6/n-3 polyunsaturated fatty acids (PUFA) ratio (P<0.05), OLI had the highest content of t11-18:1 (P<0.01) and c9,t11-18:2 (P<0.05) and SOY showed the lowest value of monounsaturated fatty acids (MUFA) (P<0.001), the highest percentage of PUFA (P<0.01) and a lower index of atherogenicity (P=0.07) than PALM. No significant differences in the sensory characteristics of the meat were noted. However, the results of the principal component analysis of meat characteristics enabled meat from those steers that consumed fatty acids from olive oil to be differentiated from that of steers that consumed soybean oil.

In dairy cows, subjected to a G6G protocol, objectives were to determine effects of (1) extending the interval from prostaglandin F2α (PGF2α) to gonadotropin-releasing hormone (GnRH) during presynchronization; and (2) adding a second PGF2α treatment before artificial insemination (AI), on ovarian response, plasma progesterone (P4) concentrations and pregnancy per AI (P/AI). In a 2×2 factorial design, lactating cows were randomly assigned to one of four timed AI (TAI) protocols: (1) G6G (n=149), one injection of PGF2α, GnRH 2 days later and a 7-day Ovsynch (GnRH, 7 days, PGF2α, 56 h, GnRH, 16 h, TAI) was initiated 6 days later; (2) G6GP (n=144), an additional PGF2α treatment (24 h after the first) during Ovsynch of the G6G protocol; (3) MG6G, one injection of PGF2α, GnRH 4 days later before initiation of the G6G protocol; and (4) MG6GP, an additional PGF2α treatment (24 h after the first) during Ovsynch of the MG6G protocol. Blood samples were collected (subset of 200 cows) at first GnRH and PGF2α of the Ovsynch, and at TAI to measure P4. Ultrasound examinations were performed in a subset of 406 cows to evaluate ovarian response at various times of Ovsynch, and in all cattle to determine pregnancy status at 32 and 60 days after TAI. Extending the interval by 2 days between PGF2α and GnRH during presynchronization increased (P<0.01) ovulatory response to first GnRH of Ovsynch, circulating P4 during Ovsynch, and P/AI at 32 and 60 days after TAI. Adding a second PGF2α treatment before AI increased the proportion of cows with luteal regression (P=0.04), improved P/AI at 60 days after TAI (P=0.05), and reduced pregnancy loss between 30 and 60 days after TAI (P=0.04). In summary, extending the interval from PGF2α to GnRH during presynchronization increased response to first GnRH of Ovsynch and P4 concentrations during Ovsynch, whereas adding a second PGF2α treatment before AI enhanced luteal regression. Both modifications of the G6G protocol improved fertility in lactating dairy cows.

This study analysed the effect of level of nutrition and date of birth (age) on the onset of puberty in Payoya she-kids born in autumn (November) or in winter (February). Two experiments were conducted to examine pubertal events at the onset of puberty. For each date of birth (age), two experimental groups were used, differing on the level of nutrition. Groups were balanced for live weight (LW) and body condition score (BCS). For the first experiment (goat kids born in autumn), 27 Payoya she-kids were used: high-nutrition group (H1, n = 13) and control group (C1, n = 14). For the second experiment (goat kids born in winter), 25 Payoya she-kids were used: high-nutrition group (H2, n = 13) and control group (C2, n = 12). In both experiments, the level of feeding was adjusted weekly according to LW so that the animals would gain about 50 and 100 g per day for C and H groups, respectively. Oestrus was tested daily using young aproned bucks. Ovulation rate was assessed by laparoscopy 7 days after identification of oestrus. Plasma samples were obtained weekly for progesterone assay. LW and BCS were recorded weekly. No effect of nutrition level or birth date (Experiment 1 v. 2) on the date of the first ovarian activity or the first detected oestrus was observed. No effect of nutrition on LW or BCS at the first detected oestrus was observed. Birth date influenced significantly the LW of the animals at the onset of ovarian activity or first oestrus (P < 0.001). Irregular sexual activity was frequently observed before the first oestrus (74.7% and 48.0% of the first reproductive activity was irregular for Experiments 1 and 2, respectively). No effect of nutrition level or birth date on ovulation rate was observed. Ovulation rate at first oestrus was influenced by LW in November-born goat kids (1.06 ± 0.06 v. 1.67 ± 0.21 corpora lutea for LW < 30 and ⩾ 30 kg, respectively, P < 0.01). These results demonstrate that the age at puberty was very dependent upon the season of birth in Payoya goat kids, and that there could be some benefit in breeding November-born goat kids at a higher LW to obtain a higher prolificacy at the first kidding as a consequence of a higher ovulation rate at puberty.

Two experiments were carried out to evaluate the effect of incremental levels of Gliricidia sepium (gliricidia) and Leucaena leucocephala (leucaena) on forage intake, diet apparent digestibility, microbial nitrogen supply and live-weight changes in cattle. In each experiment, 20 intact and five fistulated crossbred steers (Bos taurus × Bos indicus) were used. Napier grass basal diet was offered ad libitum alone or supplemented with 7·5, 15, 22·5, or 30 g dry matter (DM) per kg metabolic body weight (M075) gliricidia (experiment 1) or leucaena (experiment 2). In experiment 1, total DM intake increased but not significantly with gliricidia supplementation (5·2, 5·1, 5·2, 5·4, 5·7 (s.e.d. 0·21) kg/day) while intake of napier grass was depressed linearly (5·2, 4·7, 4·5, 4·3, 4·2 (s.e.d. 0·21) kg/day; P < 0·05). In experiment 2, supplementation with leucaena increased the total DM intake linearly without depressing the intake of napier grass (5·2, 5·8, 6·2, 6·6, 6·7 (s.e.d. 0·31) kg/day; P < 0001 and 5·2, 5·3, 5·3, 5·3, 5·0 (s.e.d. 0·21) kg/day respectively). Neither gliricidia nor leucaena supplementation affected the apparent digestibility of the diet or in sacco DM degradation characteristics of the forages. Rumen ammonia and live-weight gain were increased linearly (P < 0·05) by supplementation from 130 to 215mg/l (experiment 1) and 75 to 113mg/l (experiment 2), from 306 to 478 g/day (experiment 1) and from 538 to 850 g/day (experiment 2), respectively. However, since the responses were linear, further experiments are required to quantify the responses to higher levels of these legume supplements.

A study was carried out to compare the fermentation parameters and kinetics of digestion of a range of different foods in the rumen of two breeds of sheep (Churra and Merino). Ten mature sheep (five Churra and five Merino), each fitted with a rumen cannula, were used in this study. In situ rumen degradability of both dry matter (DM) and cell wall was greater in Churra than in Merino sheep, the breed differences being significant for most of the foods used in the study (P < 0·05). These differences were greater when the foods had a higher cell wall concentration and this could be related to differences in the ruminal environment. However, when the foods were incubated with rumen fluid their in vitro organic matter (OM) degradability was similar in both breeds. Rumen pH was higher (P < 0·05) and ammonia concentrations were lower (P < 0·05) in Churra than in Merino sheep. Rumen volatile fatty acid concentrations tended to be higher in Merino than in Churra sheep, though differences were only significant just before feeding (P < 0·05). The ratio acetate: propionate was higher in the Churra than Merino breed before and 12 h after feeding (P < 0·05). Protozoa numbers in rumen liquid were similar for both genotypes. The greater degradation of forages in the rumen of Churra sheep is discussed in relation to the possible higher activity of fibre-degrading micro-organisms and the greater buffering capacity of the rumen contents against fermentation acids, which could result in more favourable conditions for the microbial degradation of foods in the rumen.

Six weaned lambs were allocated to each of eight restricted feeding treatments with 1·00, 0·85, 0·71, 0·57, 0·43, 0·29, 0·15 or 0 of the diet as perennial ryegrass and the remainder as white clover, and to one ad libitum treatment with perennial ryegrass offered alone. A further six lambs were offered white clover ad libitum starting on day 15. Lambs on the restricted treatments received the same daily allowance of dry matter relative to live weight, adjusted at weekly intervals to allow the greatest possible intake without any rejection of herbage. Fresh cut herbage was offered daily and measurements were made over 69 days. Twelve additional lambs were slaughtered at the beginning of the experiment, and all lambs on restricted treatments were slaughtered at the end.

Increasing the proportion of clover in the diet increased the intake of nitrogen, empty-body-weight gain, carcass weight gain and nitrogen retention. When herbage was offered ad libitum, lambs ate significantly more clover than ryegrass and gained weight faster.

The weight of gut contents decreased as the proportion of clover in the diet increased. The digestibility of the organic matter, energy and nitrogen of the mixed diets simply reflected the digestibilities of the two herbages and their proportions in the mixture.

The use of family selection indices has been proposed as a promising selection method for increasing prolificacy in pigs. Responses of up to 0-50 pigs per litter per generation are predicted from selection programmes using information from the dam and from relatives (full and half-sibs) of the dam and sire. In order to test this method in populations of finite size, the rates of selection response and the accumulation of inbreeding have been studied by simulation along 10 generations in a selected herd of 10 sires and 100 dams using five different family selection indices (Id, Ifd, Ihd, Ifs, Ihs). Two undesirable features were evident: (a) the standard deviations of indices were lower than those expected; and (b) the increase of inbreeding was up to three times that expected without selection. Both effects increased with the complexity of the family index reducing the rates of selection responses per generation, when a genetic model with dominance was assumed, to values close to 0·20 piglets, similar to those obtained with the basic index (Id). Some results of inbreeding effects on reproductive traits in three strains of an old closed herd of Iberian pigs are also presented. Multiple regression analysis of data from 4657 litters indicated a decrease in the number of live born ranging from 0·14 to 0·35 piglets per 10% increase in dam or litter inbreeding coefficient.

A total of 252 lambs was subjected to two contrasting growth rates (high and low) for 7 weeks commencing at 6 weeks of age, factorially arranged with two contrasting growth rates (high and low) from 13 weeks to slaughter. Growth rate was controlled either by weaning lambs at 6 weeks and feeding indoors throughout on differing levels of a concentrate diet (84 lambs in experiment 1) or by grazing at differing sward heights up to weaning at 13 weeks after which weaned lambs were grazed at differing sward heights and where necessary housed from early October and offered differing levels of concentrate and silage (168 lambs in experiment 2). Lamb slaughter weights on each growth rate treatment covered the range 40 to 48 kg live weight.

Increasing the growth rate between 6 and 13 weeks from 213 to 320 glday in experiment 1 and from 191 to 291 g/day in experiment 2 did not significantly affect the fat depth measured at various locations throughout the carcass, the weight of perinephric and retroperitoneal fat, fat grade or the total lipid content of soft tissue dissected from the shoulder joint when lambs were taken to slaughter weights. Increasing the growth rate between 13 weeks and slaughter from 136 to 338 g/day in experiment 1 and from 99 to 146 g/day in experiment 2 significantly increased the depth of carcass fat and fat grade but, though lipid content of the tissue in the shoulder also increased, this difference was not significant.

Carcass fat depth, perinephric and retroperitoneal fat, fat grade and lipid content of the shoulder tissue increased as slaughter weight increased. The effect of carcass weight on carcass fat was greater on the high plane of feeding from 13 weeks than on the low plane. For example, mean fat depth increased by 0·52 mm/kg increase in carcass weight on the high plane compared with 0·13 mm/kg on the low plane.

Comparing the effect of plane of feeding and carcass weight on carcass fat depth the high finishing plane of feeding had an effect equivalent to an increase of 3·8 kg carcass weight. The equivalent figure for the depth of tissue over the 12th rib was 2·8 kg while in relation to fat grade the effect was smaller at 1·0 kg carcass weight.

The effects of dietary protein content and level of feeding on carcass characteristics and organ weights were studied in castrated male Iberian pigs growing from 50 to 100 kg live weight (LW). Animals were offered four diets providing 145, 120, 95 and 70 g ideal crude protein (CP) per kg dry matter (DM) and 13·94, 14·29, 14·56 and 14·83 MJ metabolizable energy (ME) per kg DM, respectively. Three levels of feeding were assayed: 0·60, 0·80 and 0·95 of ad libitum intake. The pigs were slaughtered at 100 kg LW. Daily gain in carcass (carcass gain, g/day) and protein deposition (PD, g/day) in this component attained 76·2% and 78·8% of whole-body average daily gain and PD, respectively. Carcass gain improved with each decrease in dietary CP from 145 up to 120 g/kg DM and then levelled off. A small but significant effect of dietary CP on carcass composition was observed, due to an enhanced fat deposition in pigs fed the lowest protein content diet. Mean values of protein, fat, ash and water contents in the carcass were 101·8, 522·7, 27·6 and 353·7 g/kg respectively. PD in the eviscerated carcass was not affected significantly by dietary protein level but tended to reach a maximum value with the diet that provided 95 g CP per kg DM: 55·7 g/day at the highest feeding level assayed. Carcass energy retention (MJ/day) increased significantly ( P<0·001) with decreasing dietary protein supply and on increasing level of feeding. Raising feed intake resulted in a significant decrease for carcass and a concomitant increase for viscera, as proportions of empty body weight ( P<0·05 and P<0·001, respectively). Proportional weights of shoulder and ham were not affected either by dietary CP content or feeding level. Proportionate weights of dissectable fat in the shoulder and intermuscular and subcutaneous fat in the ham were not affected by CP content of the diet. In contrast, intermuscular fat content of ham was increased by feeding level ( P<0·05), likely with implications for the quality of the cured meat product.

Milk yields of three strains of Scottish Blackface ewes (Lewis, Lanark and Newton Stewart) were recorded over periods of eight weeks on reseeded pasture and on hill pasture. There were no differences in milk yields between strains in the respective environments, but there were significant differences between environments in all three strains.

Relationships between udder width and milk yield were investigated in the Lewis and Newton Stewart strains.

Analyses of milk samples (taken by hand) showed there were no significant differences in the contents of fat or solids-not-fat. There was evidence that the percentage of fat and solids-not-fat in all groups tended to decrease initially and then to increase gradually as lactation advanced.

Live-weights of the ewes were compared and it was shown that the Lewis ewes were characteristically lighter than either of the other strains.

On the reseed all lambs were approximately equal in live-weight and condition. On the hill the Lewis lambs were inferior in weight and condition, and it is suggested this reflected the Lewis strain ewes' grazing preferences for higher ground.

A multidisciplinary research programme was developed to get a scientific expertise for the quality assessment of products obtained from cloned livestock. Thirty-seven bovine Holstein female clones of five different genotypes and their products were analysed in comparison with 38 control animals obtained by conventional artificial insemination and raised under the same conditions at the same experimental farm. Animal evaluation included over 150 criteria and more than 10 000 measurements to check the physiological status and health over a 3-year period. All the parameters studied were in the normal range for age and breed, but some significant differences were detected between clone and control groups in terms of delayed onset of puberty in clones, higher neutrophil counts in haematology or lower biochemical plasma concentrations of gamma glutamyl transferase. Milk and meat analyses were conformable to expected values. We, however, found some differences in fatty acid (FA) composition of milk and muscle suggesting a possible deviation in lipid metabolism as assessed by higher delta-9 desaturase activity indexes in both milk and muscles from clones compared with controls. Repeated muscle biopsies in the semitendinosus muscle of the same animals demonstrated a higher oxidative activity in muscle of young clones (8 months of age) compared with controls, suggesting a delayed muscle maturation in clones. Nutritional evaluation of milk and meat using the rat feeding trials did not show any difference between clone and control products for food intake, growth rate, body composition of the rats, nor for possible allergenicity. Possible reactivation of bovine endogenous retroviruses (BERVs) was analysed and compared between normal and cloned cattle. As expected, these BERV sequences are not transcribed and no RNA was detected in the blood of clones, donor animals or controls; therefore, it may be assumed that the sanitary risk associated with BERV sequences is not higher in cattle derived from somatic nuclear transfer than in cattle born from conventional reproduction. Our results confirm that the quality and safety of products (milk and meat) from adult and clinically healthy cloned cattle is globally similar to normal animals. However, from a strictly biological point of view, the slightly delayed maturation we observed in the muscle of clones together with some marginal differences identified in FA composition of both muscle and milk, point to the need for more refined analysis to totally exclude any risks from the consumption of those products.

The availability of resources including energy, nutrients and (developmental) time has a crucial impact on productivity of farm animals. Availability of energy and nutrients depends on voluntary feed intake and intestinal digestive and absorptive capacity at optimal feeding conditions. Availability of time is provided by the management in animal production. According to the resource allocation theory, resources have to be allocated between maintenance, ontogenic growth, production and reproduction during lifetime. Priorities for these processes are mainly determined by the genetic background, the rearing system and the feeding regimen. Aim of this review was to re-discuss the impact of a proper resource allocation for a long and healthy life span in farm animals. Using the barrel model of resource allocation, resource fluxes were explained and were implemented to specific productive life conditions of different farm animal species, dairy cows, sows and poultry. Hypothetically, resource allocation mismatch neglecting maintenance is a central process, which might be associated with morphological constraints of extracellular matrix components; evidence for that was found in the literature. A potential consequence of this limitation is a phenomenon called disproportionate growth, which counteracts the genetically determined scaling rules for body and organ proportions and could have a strong impact on farm animal health and production.

Strongyle infection is an important issue in horse breeding. It impairs horse health and performance, with young horses being the most sensitive. Strongyle control has long relied on the systematic use of chemical treatments. However, expanding anthelmintic resistance among strongyles calls for alternative options. Mixed grazing is assumed to reduce strongyle load on the pasture as the result of a dilution effect. This has been shown in small ruminants grazing with cattle, but the putative benefits of co-grazing between horses and cattle have not yet been evaluated. Here, we conducted field surveys and face-to-face interviews on 44 farms from two contrasted saddle-horse production areas, Normandy and northern Massif Central, to compare equine strongyle management practices between specialized systems and mixed horse-cattle systems. Our goals were (i) to quantify breeders’ awareness of the putative benefits associated with the co-grazing of horses and cattle, (ii) to establish whether mixed farming was associated with different strongyle management strategies and (iii) to test whether strongyle egg excretion was reduced in horses grazed with beef cattle. Every breeder relied on systematic calendar treatments, and only 8 out of the 23 mixed breeders were aware that co-grazing of horses with cattle could be used as part of their strongyle control strategy. Management practices were similar across both systems in Normandy. In Massif Central, mixed breeders formed a distinct cluster from their specialized counterparts: deworming was less frequent and stocking density was higher in mixed farms, while specialized breeders seemed more willing to integrate herd and plot management into control strategies. Faecal egg counts measured in horses from Massif Central were significantly reduced when horses were grazed with cattle. This was the result of an increased reliance on macrocyclic lactones in mixed farms (P < 0.01) and a significant dilution effect (P < 0.01). When considering a subsample of horses treated with macrocyclic lactones only, young horses grazed with cattle had 50% fewer strongyle eggs excreted in their faeces than horses grazed in equine-only pastures (P < 0.01). This is the first evidence of the benefits of mixed grazing with cattle as an alternative to control strongyle infection in horses, although this promising alternative remains largely unknown by horse breeders.

Mechanistic animal growth models can incorporate a description of the genotype as represented by underlying biological traits that aim to specify the animal's genetic potential for performance, independent from the environmental factors captured by the models. It can be argued that these traits may therefore be more closely associated to genetic potential, or components of genetic merit that are more robust across environments, than the environmentally dependent phenotypic traits currently used for genetic evaluation. The prediction of merit for underlying biological traits can be valuable for breeding and development of selection strategies across environments.

Model inversion has been identified as a valid method for obtaining estimates of phenotypic and genetic components of the biological traits representing the genotype in the mechanistic model. The present study shows how these estimates were obtained for two existing pig breeds based on genetic and phenotypic components of existing performance trait records. Some of the resulting parameter estimates associated with each breed differ substantially, implying that the genetic differences between the breeds are represented in the underlying biological traits. The estimated heritabilities for the genetic potentials for growth, carcass composition and feed efficiency as represented by biological traits exceed the heritability estimates of related phenotypic traits that are currently used in evaluation processes for both breeds. The estimated heritabilities for maintenance energy requirements are however relatively small, suggesting that traits associated with basic survival processes have low heritability, provided that maintenance processes are appropriately represented by the model.

The results of this study suggest that mechanistic animal growth models can be useful to animal breeding through the introduction of new biological traits that are less influenced by environmental factors than phenotypic traits currently used. Potential value comes from the estimation of underlying biological trait components and the explicit description of their expression across a range of environments as predicted by the model equations.

The effects of common and concurrent environmental stressors on the social behaviour of farm animals are poorly understood. Here, we report the results of a multifactorial experiment designed specifically to examine the individual, additive or interactive effects of elevated ammonia, noise and low light (LL) levels on the social behaviour of growing pigs. Social behaviour was measured in terms of the nature, frequency and duration of both initiated and response behaviours for 4 weeks following mixing of the groups. General activity patterns, group cohesion and social discrimination were also examined as a function of the environmental treatments. Elevated concentrations of atmospheric ammonia (∼20 v. <5 ppm) and LL intensity (∼40 v. 200 lux) had the most pronounced effects, particularly on the nature of social interactions, with pigs under these conditions showing more aggression in the early stages of the experiment. In addition, pigs exposed to a high level of mechanical noise representative of artificial ventilation (∼80 v. 40 dB [A]) were less submissive to aggressive acts, while pigs in ∼20 ppm ammonia showed more reciprocated aggression when in coincident LL (<40 lux). The results indicate that atmospheric ammonia at commonly experienced concentrations may undermine social stability, particularly in the presence of low lighting, though the mechanisms are currently unknown. These findings have implications for the welfare of growing pigs and hence policy makers and farmers alike, with respect to the improvement of welfare in intensive pig farming.