The aim of this work was to compare gas exchanges from leaf to whole plant scales, in two Ethiopian accessions (‘E083’ and ‘E027’), and two bred cultivars (Iapar 59 and Catuaí 99) of Arabica coffee (Coffea arabica L.) cultivated under irrigated and rainfed conditions. Variations in gas exchanges were evaluated over four phenophases (leaf expansion – BE1 and BE2, and berry harvesting – BH1 and BH2), covering the first two production years in the coffee life cycle. We addressed the following questions: Are gas exchanges modified by water availability at leaf and/or plant scales? Do bred cultivars and wild accessions differ in their physiological responses to water availability and phenophases? Photosynthesis (A), stomatal conductance (gs), and transpiration (E) were measured on the recently fully expanded leaves at the upper canopy stratum. The functional-structural plant modelling (FSPM) was used to integrate A at whole plant photosynthesis (A”p), based on 3D virtual trees constructed under VPlants modelling platform. Despite high A values of ‘E083’ overall phenophases, a strong decline in A”p under rainfed condition was observed due to lower plant leaf area as compared to irrigated condition. Catuaí 99 and ‘E083’ were more sensitive to drought than Iapar 59 and ‘E027’, considering photosynthesis at leaf and plant scales. At the last BH2 phenophase, A, gs, E, and carboxylation efficiency were similar between irrigated and rainfed conditions for all genotypes, suggesting some acclimation of leaf gas exchange to the environment. However, A”p benefited by water management in all phenophases as plant leaf area increased. These findings revealed the need to develop methodologies for structural and functional analyses at plant scale, an important step towards the realistic responses of plants and orchards to the surrounding environment.

Human–elephant coexistence remains a major conservation and livelihood challenge across elephant Loxodonta africana range in Africa. This study investigates the extent of elephant crop damage on 66 farms in the Selous–Niassa corridor (Tanzania), to search for potential management solutions to this problem. We found that the relative abundance of highly preferred crops (area covered by preferred crops divided by the total area of each farm) was by far the most important factor determining crop damage by elephants. Eighteen crop types were ranked according to their preference by elephants. Sweet potatoes, bananas, peanuts, onions, pumpkins and maize were the most preferred crops, with maize the most common crop among those highly preferred. On average elephants damaged 25.7% of the cultivated farmland they entered. A beta regression model suggests that a reduction in the cultivation of preferred crops from 75 to 25% of the farmland area decreases elephant crop damage by 64%. Water availability (distance to the nearest waterhole) and the presence of private investors (mostly hunting tourism companies) were of lower importance in determining elephant crop damage. Thus, damage by elephants increased with shorter distances to waterholes and decreased in areas with private investors. However, further studies are required, particularly of the perceived costs and benefits of elephants to local communities. Farm aggregation and the use of non-preferred crops that also require less water would potentially reduce elephant damage but would be a major lifestyle change for some local communities.

The distribution and abundance of herbivores in African savannas are constrained by interactions between abiotic and biotic factors. At the species-level, herbivores face trade-offs among foraging requirements, vegetation structure and the availability of surface water that change over spatial and temporal scales. Characterizing herbivore requirements is necessary for the management of the environment in which they occur, as conservation management interventions such as fencing and artificial water provision consequently have effects on how herbivores address these trade-offs. We tested the effects of environmental attributes on the probability of presence of herbivore functional types at different distances to water in the Satara section of Kruger National Park over the period of a year. Hypotheses about species’ relative distribution and abundance were developed through a literature review of forage and water availability constraints on feeding preference and body size of herbivore. We expected strong seasonal relationships between vegetation biomass and quality, and biomass of water-dependent herbivores with increasing distance to water. Our analyses of herbivore distribution across the region confirmed broad-scale descriptions of interactions between forage requirements and water availability across a set of species which differ in functional traits.

We conducted a study in 30 plots distributed uniformly in an area of 25 km2 at Ducke Reserve, Manaus, to test the hypothesis that understorey herb richness and abundance are mediated by litter, manipulating experimentally the amount of litter in the field. Over 10 mo, we followed the emergence of herbaceous seedlings and sporophytes in control, litter-addition and litter-exclusion treatments, covering an area of 1.2 m2 per plot in each treatment. We also assessed the relationship between topography and litter depth and frequency of bare-soil patches; and the influence of density of reproductive individuals on the emergence of herbs. Litter depth decreased, and the frequency of bare-soil patches increased with terrain slope in the wet season, but were not related with the soil clay content. Neither was related to the topography in the dry season. Emergence of pteridophytes was four times higher in the litter-exclusion treatment (3.7 ± 1.1 individuals m−2) than in the litter-addition treatment (0.9 ± 0.28 indiv. m−2) and increased with soil clay content. Seedlings from monocot herbs emerged twice more frequently in the litter exclusion (0.71 ± 0.25 indiv. m−2) than in the litter-addition treatment (0.33 ± 0.11 indiv. m−2), and also more in sites with high density of fruiting plants. The results are consistent with the hypothesis that regeneration of herbs with very small propagules is strongly affected by the physical barrier imposed by litter. Given that litter is shallower on slopes during the wet season, this creates a pattern of higher density and richness of pteridophytes in these areas. Monocot herbs, although also limited by litter, were more highly limited by availability of propagules, and their distribution patterns are at least in part explained by dispersal limitation. We conclude that litter is an important causal factor behind the herb distribution patterns along topographical gradients.

Vegetation and environment change mutually during secondary succession, yet the idiosyncrasies of the vegetation effect on the understorey environment are poorly understood. To test whether the successional understorey environment changes predictably and is shaped by the structure and seasonality of tropical dry forests, we estimated basal area and vegetation cover, and measured understorey temperature, light and moisture conditions, in 17 plots forming a 60-y chronosequence and a mature forest. Light and air and soil temperature decreased with time (75−15% of open-sky radiation, 31.7−29.3 °C, and +2.5 °C to −0.5 °C relative to ambient, respectively), whereas relative humidity increased (67−74%). Soil water availability increased with early-successional development (−45 to −1 kPa) but decreased afterwards (to −18 kPa). The first axis of a PCA of the rainy-season environment explained 60% of the variation and was strongly related to air temperature and relative humidity. During tropical dry-forest succession, such factors may be more important than light, the reduction in which is not extreme compared with taller and more vertically stratified wet forests. Seasonality significantly affected the successional environmental gradients, which were marked mainly during the wet season. Environmental heterogeneity was higher in the wet than in the dry season, and larger for resources (light and water) than for conditions (temperature and humidity). The wet-season increase in environmental heterogeneity potentially creates differential growing scenarios; the environmental harshness of the dry season would mostly challenge seedling survival.

After a decade of research, New Zealand’s Latitudinal Gradient Project (LGP) now includes primary sites from Cape Hallett (72°S) to the Darwin Glacier (80°S), while additional observations extend the latitudinal transect from 84°S to sub-Antarctic regions. The LGP has been structured around a hypothesis that, in a frigid continent, ice dynamics is the key ecosystem variable. For terrestrial environments, two aspects of ice dynamics appear to underlie much of the observed variability. Firstly, the aridity of the region makes the transition from ice to water a key ecological factor, and secondly, the legacy of ice dynamics dating as far back as the Pliocene is imprinted on biogeography. These factors operate at difference temporal and spatial scales and neither is monotonically related to latitude. Both are also complicated by meso-scale cross gradients of altitude and distance from the sea and micro-scale local variability. Whilst climate does vary on a broad-scale, differences within the northern and central parts of Victoria Land that the LGP has so far examined are insufficient to impose any overarching effect that can overwhelm these more local effects. The result is a multiple-scale patchwork of habitats and communities, more or less replicated across the transect, in which variability at any given latitude generally exceeds variability between latitudes. A lesser quantum of research has been directed at marine ecosystems, but here there is a similar picture of local variability dominating within the Ross Sea, with significant latitude-scale effects only emerging when transects are extended into maritime- and sub-Antarctic regions. It is implicit, but not specifically recognized in the LGP context, that a further confounding effect on the interpretation of ‘transect’ information is the multiple stressor concept that requires a simultaneous analysis of interacting (synergistic or antagonistic) factors and environmental responses. As the LGP continues to extend further south, climate is expected to become more extreme, and water availability may change sufficiently for loss of habitat and species diversity to occur. Here we discuss options for refining the LGP approach to optimize its potential for understanding variability, and the factors underpinning this, in the Ross Sea Sector.

Effects of irradiance, root competition and water availability on germination and seedling establishment of Swietenia macrophylla King were investigated in tropical secondary dry forests in the Guanacaste Conservation Area, Costa Rica. The fate of seeds sown in the beginning and the middle of the rainy season was studied in abandoned pasture, and in deciduous and semi-evergreen secondary forest. In the pasture, experimental treatments were mown and unmown grass. In the forest sites, thinning to increase light and trenching to reduce root competition were combined in a factorial design. Effects of moisture availability on germination were tested by supplementing natural rainfall in the initial rainy month. Germination at the beginning of the rainy season was not influenced by the supplementary water and was higher in the semi-evergreen forest than in the deciduous forest and pasture. In the forests, germination was little affected by irradiance or root competition. More seeds germinated in unmown than in mown pasture during the initial rains, but were not influenced by mowing when sown in the peak of the rainy season. Seedling mortality was low (>10%) during the initial months, but increased greatly in the dry season. Seedlings germinating early in the rainy season had a higher survival than those germinating later. The relatively slight effects of the different treatments and habitats on seedling establishment suggest that this species is rather insensitive to the large microsite variation in secondary vegetation.

There is a severe shortage of knowledge of bee biogeography. Some former studies have highlighted a link between bee diversity and xeric ecosystems, but we know practically nothing of the macro-ecological factors driving bee diversity. The present study aims to analyse the main macro-ecological factors driving bee species-richness in the Saharan region. Our dataset includes 25,000+ records for localities in Africa, between 37° and 10°N. Maps and GIS were used to get a first overview of the distribution of the studied taxa. Partial least squares analysis (PLS) was used to study the impact of a set of ecological factors on the bee species richness (SR). The mapping highlighted the clustering of the highest bee SR values in some parts of the Saharan area (e.g. Maghreb, western Africa). In Central Sahara, there is an obvious topological coincidence of the high SR, the local mountain chains and the inland waters. The PLS helped to quantify the relationships between bee SR and a set of eco-climatic variables. It also highlighted a residual variance not explained by the considered descriptors. Our results recover the tight link between bee SR and xeric ecosystems. They also suggest that, within these ecosystems, bee SR is driven by an optimum of the energy-water balance (on which adjustment is allowed by the above gradients).

There has been interest in using environmental screening procedures for enhancing the metabolomic production profiles by fungi which are of pharmaceutical interest. This study examined two ecologically distinct species, Epicoccum nigrum and Sarophorum palmicola, in solid substrate fermentation systems over a range of water availability conditions (water activity, aW). Total secondary metabolite profiles were obtained by HPLC + diode array detection after 14 days incubation on cereal-based substrates in relation to four aW treatments. Temporal studies (24 d, E. nigrum and 18 d, S. palmicola) showed that metabolite production profiles varied markedly between the two fungi. For E. nigrum, metabolite production generally increased with reduction in aW, and was optimal in the range 0.99 - 0.97. In contrast to this, for S. palmicola, metabolite production was restricted to the highest aW level used, 0.998, and declined to zero at 0.99 aW. Statistical analysis revealed that time, aW and their interactions were significant in all cases (p<0.001). The potential for using ecophysiological stresses for enhancing natural product discovery is discussed.

The elemental and biochemical composition of eight moss species from the maritime Antarctic were determined fornightly (summer) or monthly (winter) from December 1992 to November 1994. Short-duration summer carbohydrate maxima in Calliergon sarmentosum were seen in both years, but no other seasonal patterns were observed. The absence of seasonality in carbon, nitrogen and phosphorus concentrations or their atomic ratios suggest that the mosses were nutrient-sufficient throughout the year, and that nutrient availability was not important in determining moss productivity. Mosses from hydric habitats had lower carbohydrate and higher protein, nitrogen and phosphorus contents than those from drier habitats, possibly as a consequence of higher productivity and continual flushing with nutrients in wet habitats. The results are consistent with the importance of water and the primacy of physical factors in the ecology of Antarctic mosses.

The spatial distributions of 20 female and 15 male Arabian oryx Oryx leucoryx, reintroduced into the fenced Mahazat as-Sayd protected area (2,244 km2) in western Saudi Arabia between 1990 and 1994, were examined from their release until the end of 1999. Over this period we observed a westward shift in home range location of most male and female founder oryx to include the Rangers' Camp within core areas of activity, despite rain falling in patches throughout most of the reserve. Sporadic and unplanned availability of water had occurred at the Camp during several years. The pre-release enclosure was also located at the Camp, and high quality shading areas could be found underneath portacabins. Oryx that maintained independence of the Camp tended to be older individuals and those released in the first years (1990–1992). Concentration of oryx in the western part of the protected area and around the Camp could potentially reduce the effective carrying capacity of the reserve, change the social structure of the population, facilitate the transmission of disease, modify habitat in the form of a piosphere (a zone of attenuating animal impact away from a watering point) around the Camp, and reduce potential genetic flow within the reintroduced population. Whereas wild-born oryx were observed at the Camp, founders were disproportionately represented, suggesting that potential problems associated with dependence on the Camp may diminish as the total population increases and ages.

The period of active growth for spring ephemeral plants coincides with the period of high light, water and nutrient availability between snow melt and canopy closure in the understorey of deciduous forests in eastern North America. However, low temperatures prevail during this period and might restrict the performance of these plants. Remarkably, this peculiar phenology is extremely rare among annual plants. To understand better the role of light and water availability and of temperature in the phenology of spring ephemeral plants, we investigated the effects of two temperature regimes (low: 16/7 °C and high: 21/14 °C), three water availability levels (saturated, control and drought), and three photosynthetically active photon flux densities: low (85–100 μmol m−2 s−1); intermediate (182–196 μmol m−2 s−1); high (437–454 μmol m−2 s−1) on the growth and reproduction of the annual Floerkea proserpinacoides. Total biomass, total leaf area and flower and seed production increased with increasing temperature, water availability and light intensity. Total leaf area and total biomass were reduced in plants that were stressed under drought. However, at high temperatures, this reduction was less pronounced when droughted plants were partially shaded. At low temperatures, plants began to senesce after approximately 9 wk, whereas at higher temperatures, signs of senescence appeared after only 7 wk of growth. Despite shorter longevity, total biomass was approximately 1.5 times higher in the control water treatment at higher than at lower temperatures as a result of greater above-ground growth, and plants allocated a significantly greater proportion of mass gain to seed production. Although F. proserpinacoides can tolerate low temperatures such as those typical of early spring, higher temperatures such as those of late spring/early summer are more favorable for growth and reproduction as long as water and light are not limiting. Spring ephemeral annuals might be rare because low temperatures reduce growth rate and extend the life cycle. An annual plant might not have time to reproduce before resource availability deteriorates with canopy closure unless reproduction begins early in the life cycle of the species.