Optimal sample sizes under a budget constraint for estimating a proportion in a two-stage sampling process have been derived using individual testing. However, when group testing is used, these optimal sample sizes are not appropriate. In this study, optimal sample sizes at the cluster and individual levels are derived for group testing. First, optimal allocations of clusters and individuals are obtained under the assumption of equal cluster sizes. Second, we obtain the relative efficiency (RE) of unequal versus equal cluster sizes when estimating the average population proportion, $$\tilde {>\pi } $$ $$ . By multiplying the sample of clusters obtained assuming equal cluster size by the inverse of the RE, we adjust the sample size required in the context of unequal cluster sizes. We also show the adjustments that need to be made to allocate clusters and individuals correctly in order to estimate the required budget and achieve a certain power or precision.

Determining the germination speed is essential in experiments in the field of seed technology, as it allows the performance evaluation of a seed lot and the creation of predictive models. To this end, the literature addresses several methods and indexes. The objective of this study was to compare the main methods of emergence speed analysis in seeds, namely the non-linear regression models and the Emergence Speed Index (ESI), with the time-to-event models. The research was conducted with peach palm seeds (Bactris gasipaes) that were measured for viability and vigour through daily evaluations for 4 months. Vigour was evaluated by the quantification of the seed emergence speed, which was performed in three ways: ESI, non-linear regression and non-linear regression considering germination as a time-to-event event. From the results obtained, we conclude that the ESI is not a good indicator to evaluate the emergence speed; the non-linear regression model underestimates the errors and, thus, increases the probability of misclassifying treatments; the time-to-event model is more reliable in classifying treatments according to the emergence speed.

The physically dormant seeds of Ipomoea lacunosa and of I. hederacea undergo sensitivity cycling (insensitive ↔  sensitive) to dormancy-breaking treatment. Sensitivity cycling is important to seeds with physical dormancy in sensing appropriate environmental conditions for germination. Seed vigour is also important to seedling establishment, but no study has compared changes in vigour (or not) with changes in sensitivity. This study was conducted to determine the relationship between sensitivity cycling and seed vigour in I. lacunosa and I. hederacea. The seed moisture contents of insensitive and sensitive seeds of I. lacunosa and of sensitive seeds of I. hederacea were measured, and several vigour tests were performed. Vigour of sensitive seeds of I. lacunosa decreased more rapidly than that of insensitive seeds. No significant change in vigour was observed in either permeable or impermeable seeds of I. hederacea. We conclude that sensitivity cycling to physical dormancy break is important in maintaining vigour of I. lacunosa seeds in the soil seed-bank.

A study was conducted to assess the effect of the supply of phosphorus and the major cations on the mineral nutrient composition of whole mature wheat grains and the electron-dense globoid crystals found in the aleurone cells. Ears of wheat plants, growing in the field, were detached after anthesis. The ears were cultured to maturity in a sterile control solution which contained all essential elements. Other ears were cultured in solutions which contained no phoshorus, no calcium, no magnesium, combinations of these (−P, −Ca; −P, −Mg) or a solution which contained additional potassium but no phosphorus, calcium or magnesium. Ears cultured in the control solution produced grains with higher concentrations of P, Mg, K and Ca than grains from ears which matured on plants in the field. All the −P treatments produced grains with lower concentrations of P and higher concentrations of Mg, K and Ca than the plants grown in the field. The appearance and elemental composition of the globoid crystals in the aleurone cells support the hypotheses that the size of globoid crystals is regulated, in part, by the amount of phosphorus deposited in the grain and also by the relative proportions of K, Mg and Ca in the tissue. The culture of individual ears of cereal plants is a useful technique by which to study the transfer to and deposition of mineral nutrients in cereal grains.

Seed dormancy is a key trait used around the world to help understand the ecological dynamics of plant species, however, in some ecosystems such as the Andean forests of Colombia, the identification of dormancy class remains poorly known. To address this, we described the morphology, anatomy and dormancy class of the seeds and fruits of 14 species using microtome sections, light microscopy and scanning electron microscopy. Five native pioneer species showed Morphophysiological Dormancy, three Physical Dormancy + Physiological Dormancy and two Physical Dormancy, whereas two invasive species showed Physiological Dormancy. Only the species of the genus Cecropia had seeds with PY + PD that was promoted by the anatomical structure of the achenes. Of the analysed species, 85% showed dormancy and followed a pattern like other tropical montane ecosystems in the world. The anatomy of achenes and development of seed dormancy play important roles in the capacity of Cecropia species to contribute to the natural regeneration of Andean ecosystems. Additionally, seed dormancy may promote the high invasiveness of Thunbergia alata and Ulex europaeus in the Andean forests of the Central Cordillera of Colombia.

Generally, orchids produce dust-like seeds in which endosperm reduction and embryo undifferentiation represent a derived state shared with species in about 11 other plant families. Orchid seeds are proposed to have a special kind of morphological or morphophysiological dormancy. We test this proposition, overcoming several design limitations of earlier studies, specifically that the in vitro germination method for orchid seeds uses pro-oxidants for disinfection and incorporates nitrate in the medium; both ‘treatments’ might contribute to dormancy breaking, potentially confounding judgement on the depth and nature of the dormant state. Seeds of the tropical orchid Dendrobium cruentum Rchb. f., were sown both in vitro, on a nutrient medium, and ex vitro, on plain agar omitting prior disinfection with sodium hypochlorite. Seeds previously stored and fresh seeds were incubated under combinations of vitro conditions, light treatments, constant or alternating temperatures and nitrate concentration. Seeds of D. cruentum are very small but have a large embryo that occupies most of the seed. Over a range of constant temperature seeds germinated to the spherical protocorm stage just as well ex vitro as in vitro. Neither light nor nitrate were prerequisites for ex vitro germination. The ability of D. cruentum seed to germinate in the absence of environmental or chemical stimuli suggests that mature seed can be non-dormant. Our results support the proposition that neither all DUST seed fit a dormancy class nor all orchids produce morphological or morphophysiological seeds. Finally, embryo/seed volume determinations in orchids may prove as valuable in studies on the evolution and ecology of germination and dormancy as embryo:seed ratios in other angiosperm species.

Climate variability is expected to increase due to climate change, with projected increases in temperature and erratic rainfall patterns. These changes will alter the environmental cues sensed by seeds, and therefore will impact plant recruitment. This study investigated the effects of seed functional traits (germinability, germination time, synchrony and seed mass) on germination responses of several sub-tropical native Australian plant species under different environmental factors (water stress, salinity and pH). The effect of a hot water pre-treatment was also tested on Fabaceae seeds with known physical dormancy. Seed traits, environmental factors and seed pre-treatments had significant effects on final germination percentage and germination time. Seed mass and time to 50% germination (t50) were also positively correlated. In contrast, pH did not affect germination and there was no interaction between pH and any of the measured seed functional traits. Some species showed a high thermal tolerance to germination and germination was indifferent to light conditions for all species. Results showed that certain seed functional traits interact with environmental factors to influence germination percentage and time. These findings highlight the importance of considering seed functional traits when determining a species germination response under a changing climate. In addition, the findings provide important knowledge to better guide seed-based land restoration programmes.

Pre-harvest sprouting (PHS) induced by the absence of seed dormancy causes a severe reduction in crop yield and flour quality. In this study, we isolated and characterized TaABI4, an ABA-responsive transcription factor that participates in regulating seed germination in wheat. Sequence analysis revealed that TaABI4 has three homologues, located on chromosomes 1A/1B/1D. TaABI4 contains a conserved AP2 domain, and AP2-associated, LRP and potential PEST motifs. Putative cis-acting regulatory elements (CE1-like box, W-box, ABRE elements and RY elements) were identified in the TaABI4 promoter region that showed high conservation in 17 wheat cultivars and wheat-related species. Expression profiling of TaABI4 indicated that it is a seed-specific gene accumulating during the middle stages of seed development. Transcript accumulation of TaABI4 in wheat cultivar Chuanmai 32 (CM32, PHS susceptible) was 5.07-fold and 1.39-fold higher than that in synthetic hexaploidy wheat SHW-L1 (PHS resistant) at 15 and 20 DPA, respectively. Six expression quantitative trait loci (eQTL) of TaABI4 on chromosomes 2A, 2D, 3B and 4A were characterized based on the accumulated transcripts of TaABI4 in SHW-L1 and CM32-derived recombinant inbred lines. These QTLs explained 10.7 to 46.1% of the trait variation with 4.53–10.59 of LOD scores, which contain genes that may affect the expression of TaABI4.

Group-testing regression methods are effective for estimating and classifying binary responses and can substantially reduce the number of required diagnostic tests. However, there is no appropriate methodology when the sampling process is complex and informative. In these cases, researchers often ignore stratification and weights that can severely bias the estimates of the population parameters. In this paper, we develop group-testing regression models for analysing two-stage surveys with unequal selection probabilities and informative sampling. Weights are incorporated into the likelihood function using the pseudo-likelihood approach. A simulation study demonstrates that the proposed model reduces the bias in estimation considerably compared to other methods that ignore the weights. Finally, we apply the model for estimating the presence of transgenic corn in Mexico and we give the SAS code used for the analysis.

In small seeds, light often promotes germination and longer-term exposure to darkness reduces light sensitivity. In cacti inhabiting harsh environments, a rapid response to light exposure is potentially advantageous for seedling establishment. We exposed dark-imbibed seeds of the cactus Cereus repandus to doses of red (RED) light and far-red (FR) light. The seeds exhibited positive photoblastism to RED light. Although the initial levels of germination varied between seed lots, the sensitivity to increasing the RED dose did not. As little as 5 min per day for 4 d was sufficient to saturate the light requirement for germination. The effects of RED light were reversed by FR exposure as long as the interval between RED and FR did not extend to 2 d, by which time the seeds had ‘committed’ to germinate. Dark incubation for 1–2 weeks prior to RED exposure reduced light sensitivity in two seed lots, such that RED only promoted around 20% germination. Phytochrome is assumed to mediate the reversibility of the RED:FR response. High sensitivity to light spectral quality suggests that seeds of C. repandus are able to germinate quickly in high-quality microsites, but seed burial or shading may commit the seeds to form a soil seed bank. The light characteristics of the germination trait in this species are typical of many small seeded species of the drylands.

Pea seed development on the mother plant consists of three phases, all limited by water concentration (WC). The first (P1) or embryogenesis sensu stricto takes place at constant WC (stable at 80%). During the phase P2, cotyledon filling or maturation, WC decreases linearly from 80 to 55% (physiological desiccation) but the water content stays constant while the dry weight increases until it stops abruptly (at 55% WC), at this time, the seed has almost reached its final dry weight, its maturity mass or physiological maturity. The third phase, P3, consists of a fast desiccation which leads to a WC of 18–14%, where the seed is mature and ready to harvest. Similar events occur in other grain legumes, in cereals where mass maturity is attained at a lower WC (close to 40%) and in other species including crop or weed species. An elementary model of pea seed dry-matter accumulation, based on the constancy of water content (P1) and the linear decrease of WC from 80 to 55% (P2), allows us to define a coefficient α linked to WC and to calculate dry matter changes versus α. This model, taking account of WC in other species, can be generalized easily. Maturation of the somatic embryo, occurring under conditions very close to those present in vivo around the zygotic embryo, follows a pattern of decrease of WC similar to that of the zygotic embryo. We expect that if cell number is similar in the somatic and the zygotic embryo, synseeds will be ready for trade in the near future since control of all the processes that lead to zygotic-like embryoids is now available.

Emerging economies (Brazil, Russia, India, China and other countries) are expected to play a major role in the global economy during the 21st century. Some of these countries have exceptional soil and climate characteristics that determine evident advantages for food production. These features, combined with a rapid adoption of technologies generated by industrialized economies (i.e. transgenic crops and others), have been instrumental to fast expansion of agricultural production in recent years. For such reasons, some of these economies are strongly based on production of food commodities (agriculture represents 18.3, 12.6, 9.4 and 8.1% of the gross domestic product of India, China, Argentina and Brazil, respectively) and have a great share in global food production. Despite the mentioned characteristics that make agricultural activity so efficient in these countries, generation of new technologies in order to guarantee the systems' sustainability and add value to agricultural production (by means of, for example, royalties or technologies generated with local criteria) relies on research carried out in areas such as crop science, biotechnology, ecology, plant breeding and, of course, seed science. However, the amount of local research carried out in these countries appears not to be in agreement with the importance that agricultural production has in their economies. For example, Argentina produces 16.20% of the soybean produced in the world but only 2% of the scientific literature related to this crop in its many aspects. This imbalance between the weight that agricultural production has on these economies and generation of knowledge in the related disciplines, threatens the sustainability of these economic models and, therefore, of global food production. Seed science, then, is called on to play a major role in these emerging economies, through the different approaches (i.e. ecological, physiological, agronomical and molecular) that the discipline has to offer. Here we provide four examples in which seed science (through any of the four approaches mentioned above): (1) has identified subtle but crucial components of newly adopted production systems; (2) has proposed means for their adjustment in order to secure the sustainability of those systems; and (3) might help to add value to agricultural production through the development of new germplasm displaying specific features (e.g. timing of dormancy release adjusted to industrial necessities).

Aleurone layers of mature germinating barley (Hordeum vulgare, cv. Himalaya) grains respond to heat shock by synthesizing heat-shock proteins (HSPs) and by selectively suppressing the synthesis of proteins normally translated by endoplasmic reticulum (ER)-bound ribosomes. To determine if this also was the case during seed development, we investigated the synthesis of proteins translated by ER-bound ribosomes in heat-shocked aleurone layers isolated from developing barley grains. The optimal induction temperature for the heat shock response in developing aleurone layers was 37.5°C, and temperatures above 42°C inhibited translation. HSPs with apparent molecular masses of 71.1, 66.2, 57.8, 19.1 and 18.8 kDa were induced. Other studies have shown that, in gibberellic acid (GA)-induced aleurone layers from mature barley grains, these temperatures were 40°C and 45°C, respectively. Furthermore, in developing aleurone layers, mRNAs encoding proteins translated by ER-bound ribosomes (mRNAs for a lipid transfer protein and a putative amylase/protease inhibitor) remained stable during heat shock. The ER membranes themselves remained in stacks, but the lumen became distended with electron-dense material. Heat shock prevented the movement of proteins from the ER into the rest of the endomembrane pathway. In contrast, other studies show that in mature, GA-induced aleurone layers, heat shock dissociates ER stacks and blocks translation, but the processing of secretory proteins in the endomembrane pathway is not inhibited. The observation that the same tissue at different developmental stages may respond differently to heat shock indicates that components of the heat-shock response are developmentally regulated. This system provides an opportunity to better understand the nuances of the heat-shock response, especially the post-transcriptional gene regulatory mechanisms that occur.

Only a few studies have been performed on seed germination of perennial ephemeral species native to the cold deserts of central Asia. We hypothesized that seeds of the cold desert perennial ephemeral Leontice incerta exhibit versatility in the timing of germination, that is, having the capacity to germinate at any time in summer, autumn and next spring. At dispersal in late May, only about 30% of the seeds could germinate; thus, a high percentage of the seeds was dormant. Seeds had a fully developed embryo, and dry storage, cold stratification, warm stratification and gibberellin promoted germination; we concluded that they have non-deep physiological dormancy. Seeds buried under natural conditions during summer germinated to 57–86% in autumn (late October) when exhumed and incubated at 5/2–25/15°C. However, seeds were sown in soil exposed to natural temperature and (low) precipitation did not germinate until next spring when the soil was moist. Thus, like various cold desert annuals, seeds of the perennial L. incerta can germinate in summer, autumn and next spring, depending on the availability of soil moisture (rainfall). Rainfall in cold deserts can play an important role in shaping seed germination traits of desert plants.

Intact grains of barley (Hordeum distichum cv. Triumph) germinated rapidly in the dark or when exposed to brief daily light breaks in the temperature range 15–25°C, although germination proceeded less rapidly at low temperatures. Prolonged illumination (16 h/day) or continuous light inhibited germination of grains most effectively when conditions were less than optimal for germination, i.e. under low temperatures, restricted water, and low water potential induced by mannitol. Embryos isolated from grains responded in a similar way to light applied when the amount of water was restricted; water stress did not affect germination percentages in the dark or after one brief light break (3 min) but appreciably reduced the rate of germination. While light was only slightly inhibitory to embryos under optimal germination conditions, its inhibitory effect was intensified when other factors tending to delay germination were present. Water restriction also caused ABA contents in embryos to rise. Under conditions of water stress (water restriction or low osmotic potential), CaCl2 enhanced the inhibitory effect of light; however, addition of LaCl3 reversed this effect. The nature of light-induced inhibition of germination is discussed.

Seed dispersal has key implications for community dynamics and restoration ecology. However, estimating seed rain (the number and diversity of seeds arriving in a given area) is challenging, and the lack of standardization in measurement prevents cross-site comparisons. Seed trap effectiveness and accuracy of seed sorting methods are key components of seed rain estimates in need of standardization. We propose and describe a standardized protocol for evaluating the effectiveness of two seed trap types (sticky and funnel traps) and the accuracy of a seed sorting method. We used widely available seeds (arugula, quinoa, sesame and sunflower) to produce a gradient of seed size, weight and colour. Proof-of-concept was tested in a tropical grassland, where traps were set for 30 days. Our results suggest that we underestimate dispersal of seeds with less than 2 mm width that can be easily mistaken for debris and soil particles or that fail to adhere to sticky traps. Seeds on sticky traps may be more vulnerable to removal by wind and rain, whereas seeds in funnel traps are more susceptible to decay. We found no evidence of observer bias on seed sorting for funnel trap samples. However, accuracy on seed sorting for funnel trap samples tended to decline for seeds with less than 2 mm width, suggesting a size-dependence in seed retrieval success. Our standardized protocol addressing trap effectiveness and seed sorting methods will increase the reliability of data obtained in seed rain studies and allow more reliable comparisons between datasets.