A unique stand of mangroves of the genus Bruguiera occurs on the shore terrace at Hosnies Spring, Christmas Island, Indian Ocean. The mangrove stand, of about 0.33 ha, occurs 120 m inland and over an elevational range of 13 m, from 24 to 37 m above sea level. It is flooded by freshwater from a spring which trickles over a partially-cemented calcsinter concretion gravel with mud. Trees reach 30–40 m high, and 80 cm diameter breast height. The size structure is bimodal with few trees in the 10–25 cm dbh size classes, but abundant propagules, seedlings and saplings. The shore terrace contains corals, some in their position of growth, and has been shown by Uranium-series dating to be Last Interglacial in age. Several alternative explanations of how the mangroves reached this site are examined. One explanation is that this stand of mangroves has persisted at the site for approximately 120,000 years since the Last Interglacial. While this cannot be proved it does appear that the stand is relict and is actively regenerating in this unusual location.

Many frugivorous animals disperse seeds in their faeces (Corlett 1998, van der Pijl 1982), which may enhance the ability of secondary seed dispersers and post-dispersal seed predators to locate seeds (Andresen 2001, Chapman 1989, Feer 1999, Janzen 1982). By destroying and moving seeds these animals can radically alter the primary seed shadows generated by frugivorous animals and, consequently, have the potential to influence plant recruitment (Alcántara et al. 2000, Crawley 1992). Nevertheless, the influence of faeces on seed removal in South-East Asian forests has not previously been investigated and our knowledge currently comes from studies in Neotropical forests (Andresen 2001, Chapman 1989, Feer 1999, Janzen 1982).

Parrots represent a large biomass of canopy granivores in tropical forests, and may be effective pre-dispersal seed predators. We evaluated the importance of the lilac-crowned parrot (Amazona finschi) as a pre-dispersal seed predator of Astronium graveolens (Anacardiaceae) in tropical dry forest. Seeds were collected in fruit-traps beneath 22 trees to compare pre-dispersal seed predation by parrots and insects, and determine whether intensity of seed predation was related to fruit-crop size or the aggregation of fruiting conspecifics around focal trees. Ground-level exclosures were established to compare post-dispersal seed predation by vertebrates and insects. The lilac-crowned parrot predated 43% of seeds pre-dispersal, while insects predated only 1.3%. Intensity of pre-dispersal seed predation by parrots was significantly greater in high-fruiting 0.79-ha resource patches, and was not related to fruit abundance of the focal tree. Foraging parrots also discarded immature fruits below the tree, causing a total 56% pre-dispersal loss of seed production, which was greater than post-dispersal removal by vertebrates, mainly rodents (51%) or insects (36%). Our results show that parrots play an important role as pre-dispersal seed predators in tropical dry forests. The reduction of parrot populations in tropical forests may have consequences for seed predation, affecting recruitment patterns of canopy trees.

Certain forestry and agricultural practices are known to affect arbuscular mycorrhizal (AM) fungal communities, but the effects of deforestation – including slash-and-burn management and other more severe disturbances – in tropical rain forests are poorly understood. We addressed the effects of anthropogenic disturbance on rain-forest AM fungal communities in French Guiana, by comparing mature tropical rain forest, slash-and-burn (5 y old) and clearcut areas (8 y old). A total of 36 soil samples were collected in six plots and sequenced using a high throughput 454-pyrosequencing platform. A total of 32649 sequences from 103 AM fungal virtual taxa (VT) were recorded. Whereas alpha diversity of AM fungi did not decrease due to land-use intensification, with average richness ranging from 17 to 21 taxa per plot, beta diversity (average distance to multivariate centroid) dropped by 28% from 0.46 in rain forest to 0.33 under clearcutting. AM fungal community composition was correlated with land use and soil chemical properties. Clearcut areas were characterized by the more frequent occurrence of specialist AM fungi, compared with mature forest or slash-and-burn areas. Specifically, clearcuts contained the highest proportions of VT that were geographic (21%), habitat (31%), abundance (97%) or host (97%) specialists based on VT metadata contained in the MaarjAM database. This suggests that certain AM fungi with narrow ecological niches have traits that allow them to exploit conditions of severe disturbance. In conclusion, slash-and-burn management appears to allow diverse AM fungal communities to persist, and may favour regeneration of tropical rain forest after abandonment. More severe disturbance in the form of clearcutting resulted in marked changes in AM fungal communities.

Species-specific traits of trees affect ecosystem dynamics, defining forest structure and understorey development. Ochroma pyramidale is a fast-growing tree species, with life-history traits that include low wood density, short-lived large leaves and a narrow open thin crown. We evaluated forest succession in O. pyramidale-dominated secondary forests, diverse secondary forests, both 10–15 y since abandonment, and rain forests by comparing height, density and basal area of all trees (> 5 cm dbh). Furthermore, we compared species richness of understorey trees and shrubs, and basal area and density of trees of early- and late-successional species (< 5 cm dbh) between forest types. We found that tree basal area (mean ± SD: 32 ± 0.9 m2 ha−1) and height (12.4 ± 1.8 m) of canopy trees were higher, and density (1450 ± 339 ha−1) lower in O. pyramidale forests than in diverse forests, and more similar to rain forest. Understorey shrub diversity and tree seedling density and diversity were lower in O. pyramidale forests than in diverse forests, but these forest types had a similar density of early- and late-successional trees. Canopy openness (> 15%) and leaf litter (> 10 cm) were both highest in O. pyramidale forests, which positively affected density of understorey trees and shrubs and negatively affected density of late-successional trees. In conclusion, O. pyramidale forests presented structural features similar to those of rain forest, but this constrained the establishment of understorey tree species, especially late-successional species, decreasing successional development.

Seed dispersal is the predominant mobile stage for sessile plants, and critically affects the distribution patterns of the species (Nathan & Muller-Landau 2000). Thus, seed dispersal patterns are important in understanding the population dynamics of the species.

We report long-term observations on leaf herbivory in the mangroves Rhizophora mangle and Avicennia germinans, on the Placencia Peninsula of Belize. We labelled and traced leaves and recorded the amount of damage appearing over a period of 310 days. Herbivores had damaged 1–4% of total mean leaf area within the first 10 days, but damage rates levelled off thereafter, to a final total of 4–10% damage. Herbivores did not concentrate on leaves of younger age classes. Rhizophora mangle growing in the high tidal zone (HHW) exhibited the highest initial and total attack rates at all but the final sampling dates. We also documented the dynamics of injury expansion and necrosis following artificial injury to seedling and tree leaves. Artificial holes in leaves were associated with higher subsequent rates of herbivory that varied among leaf age classes, and particular damage types were more prevalent in previously injured leaves. Artificial holes expanded significantly more in young leaves of both species. Holes in young leaves of both species expanded by up to 45.1% in area over 50 days, consistent with a similar study in Australia. Substantial necrotic areas developed around the injury site; a secondary effect of damage not often considered in herbivory studies. We discuss the implications of hole expansion and necrosis in estimating error in herbivory measurements. Temporally dynamic studies of herbivory are especially needed in tropical systems that show non-deciduous phenologies and long-lived leaves.

Resource partitioning has been hypothesized to play a role in the maintenance of tree diversity in tropical forests. We looked for evidence of light and soil moisture partitioning among seedlings of four native Malagasy tree species, the pioneer, gap-adapted species Harungana madagascariensis and the three shade-tolerant species Ocotea cymosa, Stephanostegia capuronii and Uapaca ferruginea. Four hundred and eighty seedlings were transplanted in experimental plots in the Tampolo coastal forest and grown for 2 y. Growth rates increased with increasing light availability for all species, and with increasing dry-season soil moisture for H. madagascariensis. With increasing light availability, survival increased for H. madagascariensis, S. capuronii and U. ferruginea but decreased for O. cymosa. While dry-season soil moisture did not influence the growth or survival of the shade-tolerant species, it interacted with understorey light in its effect on the performance of H. madagascariensis, which performed better in wet soils at high light than in dry soils in shade. Rank reversals in species performance suggested that three of the four tree species partition resource gradients as seedlings, mostly light and secondarily dry-season soil moisture. There was only partial agreement between the performance of transplanted seedlings and the distribution of natural seedlings of the same four species with respect to light and soil moisture, suggesting that the success of tropical tree regeneration can only be partly accounted for by seedling performance across resource gradients.

The ecological effects of logging in the tropics have been analysed largely in terms of its impacts on species diversity and abundance. However, information is very limited regarding the impact of logging on ecological processes such as species interactions. Here we hypothesize that timber extraction per se, that is, in the absence of hunting, affects the abundance of the frugivorous spider monkey, Ateles geoffroyi, and that this has indirect effects on the recruitment of a predominant tree species, Manilkara zapota, and the diversity of the understorey plant community. We compared logged and unlogged sites, using a paired design. In each management condition we conducted line transects and interviews to evaluate spider monkey abundance and game preferences, respectively. Impact on plant recruitment and understorey diversity were evaluated using 2 × 2-m plots (N = 320) established under 40 M. zapota tree crowns. No spider monkeys were recorded in logged sites whereas they were abundant (15 ± 8 individuals per man-km) in unlogged sites. Interviews showed that spider monkeys are not hunted by local inhabitants. Logging was correlated with a reduction of the number of M. zapota fruits used by A. geoffroyi; an increase in the number of sites dominated by M. zapota; and a reduction in understorey plant diversity. Our results suggest that the absence of A. geoffroyi in logged sites can indirectly impact plant recruitment and diversity via the disruption of plant–frugivore interactions. Further work is needed to assess if these effects persist over the long term, to define if logging operations affect the overall diversity of tropical forests.

The identification of seed dispersers and predators is essential to understand the effect of anthropogenic disturbances, and the associated defaunation process, on tropical forest dynamics in Central Africa. In this study, the animals involved in seed predation and dispersal of Dacryodes normandii (Burseraceae), an endozoochorously dispersed tree species endemic to Gabonese forests, were identified in a site in south-east Gabon using two complementary methods: direct observation and camera-trap monitoring of fruit piles. The combined sampling effort (172 h of direct observations and 796 d of camera trapping) led to the identification of six disperser and eight predator species of D. normandii seeds. With high frequency of consumption (88% and 57% of their visits, respectively) and long visit duration (83 and 23 min, respectively), the western lowland gorilla and central chimpanzee were identified as the main dispersers of this species. Seeds passed through the gorilla gut exhibited high germination success (68%). Rodents were identified as predators of D. normandii seeds, potentially displaying rare secondary dispersal through scatter-hoarding. The results of this study highlight the importance of great apes in the seed dispersal of this tree species.

Bird's nest ferns (Asplenium nidus complex) (Yatabe & Murakami 2003) are common epiphytes of the Old World tropics and house a high abundance of arthropods (Ellwood & Foster 2004). Through interception and retention of leaf litter (Paoletti et al. 1991, Piggott 1996, Richardson 1999), epiphytes interrupt litterfall dynamics (Clark et al. 1998, Nadkarni & Matelson 1991) and delay the return of nutrients to the forest floor (Nadkarni 1984). Precipitation percolating through the canopy as throughfall is enriched as nutrients are leached from plant surfaces (Levia & Frost 2006). Water flowing down the trunk of trees as stemflow is further enriched from prolonged contact and accumulated nutrient deposits on the trunk (Levia & Frost 2003, Liu et al. 2002). Epiphytes can alter stemflow nutrient concentrations by slowing water percolation and by nutrient uptake and release (Awasthi et al. 1995, Strigel et al. 1994).

Mites use the leaf domatia of many woody plant species in Australasia and North America. Different types of leaf domatia, including pits, pockets and tuft domatia, are present among plant species in disturbed forests, plantations and gardens of Bangladesh in South Asia. These structures are frequently occupied by mites. Pooling across all species, domatia were often (66%) occupied by mites and used by them for shelter, egg-laying and development. On average, 70% of all mites on leaves were found in domatia, and over three-quarters of these were potentially beneficial (i.e. of predaceous or microbivorous taxa) to the plant. Further, when species were pooled across sites, leaves of domatia-bearing plants had significantly more predaceous mites than those of plants without domatia. These results are consistent with the patterns of mite-domatia association reported in Australasia, North America and North Asia and with predictions of mutualism between plants and mites.

Differences in rainfall between years influenced the proportions of different types of nesting habitats of Caiman crocodilus yacare available near water bodies in a region of intermittent rivers (Campo Dora Ranch). In contrast, rainfall had little effect on the proximity of nesting habitat to water bodies in a region of isolated lakes (Nhumirim Ranch). There was a strong positive correlation between female body size and clutch size Snout-vent lengths of females on Campo Dora Ranch were significantly larger than those from Nhumirim Ranch which probably accounts for the larger mean clutch size than in the region of isolated lakes. Hatchling size was correlated with egg size, but there was no relationship between egg size and female size or egg size and clutch size.

Root biomass, root lengths, and mycorrhizal associations were compared in a series of primary and Acacia-dominated secondary rainforest stands on nutrient-poor, red podzolic soils developed from low grade Palaeozoic metasediments. Five soil cores to 200 mm depth were collected at random locations from each of 20 sites. Ten of these sites were in 20–25 m high closed secondary forest (30–40 y old) dominated by Acacia aulacocarpa and ten sites were located in primary, selectively-logged, rainforest (28–32 m tall). Arbuscular mycorrhizas were the only form of association found in the primary forest sites. Ectomycorrhizas dominated the secondary forest sites although arbuscular mycorrhizas were also present. The primary forest sites had significantly higher root biomass (34.4 ± 17.8 t ha-1) and root length (33,400 ± 3,200 km ha-1) than the secondary forests (11.6 ± 4.6 t ha-1 and 25,200 ± 4,800 km ha-1 respectively), and this was interpreted as a reflection of the greater allocation of biomass to roots necessary to support the greater above ground biomass. The specific root length in the secondary forest (340 ± 119 cm g-1) was twice that of the primary forest (154 ± 65 cm g-1) indicating that the trees in the secondary forests achieved a degree of soil exploration which was comparable to that in the primary forest with less than half the biomass allocation to roots. The dominance of ectomycorrhizas in the secondary forest was associated with the prevalence of Acacia aulacocarpa, and the results cannot be extended to other secondary forests in the region. The implications that the dominant ectomycorrhizal associations have for the patterns of successional development and the patterns of species colonization in these Acaria-dominated secondary forests are discussed.

Coastal wetland plant communities are strongly structured by water depth and salinity. Rising sea level will cause changes in the hydro-period, surface water salinity and salt-water intrusion in coastal areas, which will reduce the distribution of forests in these areas. We studied the dynamics of a Pterocarpus officinalis stand in Puerto Rico over a 9-y period. We observed differences in plant growth, recruitment and mortality across a salinity gradient within a 1-ha plot. In areas of high salinity, recruitment, juvenile density and growth rates of juveniles and adults were lower. The detrimental effect of salinity was also observed in a growth experiment; seedlings in 5‰ and 10‰ salinity treatments had higher mortality, slower growth and less above- and below-ground biomass than control seedlings (0‰). In addition, an increase from 0 to 1‰ in salinity resulted in approximately 50% less nodulation in seedlings. Low recruitment in high salinity areas and lack of recruitment in adjacent grasslands will further reduce the distribution of this forest type. Although some ecosystems can respond to changing conditions by migration to more favourable areas, this is not the case with P. officinalis, and thus, restoration efforts are needed to re-establish this species where it occurred historically.

Termite foraging was monitored with cellulose baits in both the wet and dry season in the semi-arid Okavango Delta region of northern Botswana. Seven wood-feeding species were found. Fungus-growing termites dominated the assemblage in all plots, and four species (Macrotermes michaelseni, Odontotermes sp. A, Allodontermes sp. and Microtermes sp.) were found in most. Foraging by smaller-bodied Allodontermes sp. and Microtermes sp. was largely confined to the wet season. Foraging by M. michaelseni and Odontotermes sp. A was more constant, but showed a general peak in the early dry season (May and June), likely due to nutrient and energy demands associated with alate production. Despite extensive overlap in distributions of these species, co-occurrences on baits were significantly less frequent than expected by chance. In addition, incidence in a plot of Allodontermes sp. and Microtermes sp. was negatively correlated in the wet season, as was that of M. michaelseni and Odontotermes sp. A in the dry season. Differences in body size, life history, and nest structure produce temporal and spatial heterogeneity in the foraging and distribution patterns of termites, and therefore suggest that consideration of community composition can improve prediction of the influence of termite assemblages on decomposition.

Spatial distributions of many tropical trees are skewed to specific habitats, i.e. habitat specialization. However, habitats of specialist species must be divergent, i.e. habitat divergence, to coexist in a local community. When a pair of species specialize in the same habitat, i.e. habitat convergence, they could not coexist by way of habitat specialization. Thus, analyses of habitat divergence, in addition to habitat specialization, are necessary to discuss coexistence mechanisms of sympatric species. In this study, the habitat specialization and habitat divergence along topographic gradients of eight sympatric tree species of the Fagaceae were studied in a 15-ha study plot in a tropical lower montane forest in northern Thailand. A statistical test with torus shift randomizations for 9673 trees of Fagaceae revealed significantly biased distributions for all of the species, for at least one of the four topographic variables used: elevation, slope inclination, aspect and convexity. Slope convexity was the most critical topographic variable, along which all but one species had significantly skewed distributions. Out of 112 possible combinations of species pairs and topographic variables, 18 (16%) and two pairs (1.8%) showed significant habitat divergence and habitat convergence, respectively. The observed habitat divergence alone could not completely explain the coexistence of the eight species. There was a gradation in the habitat position of each species, with relatively large overlaps between species distributed in similar habitats, and small overlaps between species associated with contrasting habitats, respectively. The gradual changes in the habitats of the species suggested that dividing the species into a small number of distinct habitat groups, such as ridge and valley specialists, would not be straightforward.

A community of frugivorous weevils was studied by quantitative rearing of 57 weevil species represented by 10485 individuals from 326 woody plant species in lowland rain forest in Papua New Guinea. Only fruits from 35% of plant species were attacked by weevils. On average, weevils were reared from only 1 in 33 fruits and 1 kg of fruit was attacked by 2.51 individuals. Weevil host specificity was relatively high: 42% of weevil species fed on a single plant genus, 19% on a single plant family and only 16% were reared from more than one family. However, monophagous specialists represented only 23% of all reared individuals. The average 1 kg of fruits was infested by 1.84 individuals of generalist weevils (feeding on allogeneric or allofamilial host species), 0.52 individual of specialists (feeding on a single or several congeneric species), and 0.15 individual of unknown host specificity. Large-seeded fruits with thin mesocarp tended to host specialist species whereas those with thick, fleshy mesocarp were often infested with both specialists and generalists. Weevils tended to avoid small-seeded, fleshy fruits. The low incidence of seed damage (3% of seeds) suggests that weevils are unlikely to play a major role in regulating plant populations via density-dependent mortality processes outlined by the Janzen–Connell hypothesis.

The proliferation of climbers can have deleterious effects on tree regeneration, especially in forest canopy gaps where climbers increase in abundance. In response to the colonization by climbers, the supporting tree can suffer a reduction in growth and its allometric relationships may be modified. We evaluated the effects of three species of climber on the performance of the pioneer tree Ceiba pentandra in a moist semi-deciduous tropical forest in Ghana. In each of three gaps, four plots were set up, each with eight Ceiba seedlings paired with a single plant of one of three climber species, planted within 5–10 cm of the tree seedling, plus a control (no climber). The climber species were: Centrosema pubescens, a nitrogen-fixing woody climber; Combretum racemosum, a woody climber and Dioscorea praehensilis, an herbaceous climber. After 12 mo, Centrosema and Combretum had about four to five times more biomass than Ceiba seedlings. There was no effect of climber competition on Ceiba biomass growth, and no relationship between climber biomass and Ceiba growth rate. Individual climber species, however, had other effects: Combretum caused a significant reduction in the height and diameter growth of Ceiba, whilst competition with Centrosema was associated with significant reduction in the crown area and increase in internode length in Ceiba. The results indicate that even very different climber species appear to cause negative effects on trees during regeneration.