Effects of irradiance, root competition and water availability on germination and seedling establishment of Swietenia macrophylla King were investigated in tropical secondary dry forests in the Guanacaste Conservation Area, Costa Rica. The fate of seeds sown in the beginning and the middle of the rainy season was studied in abandoned pasture, and in deciduous and semi-evergreen secondary forest. In the pasture, experimental treatments were mown and unmown grass. In the forest sites, thinning to increase light and trenching to reduce root competition were combined in a factorial design. Effects of moisture availability on germination were tested by supplementing natural rainfall in the initial rainy month. Germination at the beginning of the rainy season was not influenced by the supplementary water and was higher in the semi-evergreen forest than in the deciduous forest and pasture. In the forests, germination was little affected by irradiance or root competition. More seeds germinated in unmown than in mown pasture during the initial rains, but were not influenced by mowing when sown in the peak of the rainy season. Seedling mortality was low (>10%) during the initial months, but increased greatly in the dry season. Seedlings germinating early in the rainy season had a higher survival than those germinating later. The relatively slight effects of the different treatments and habitats on seedling establishment suggest that this species is rather insensitive to the large microsite variation in secondary vegetation.

Tropical plants have been suggested to have higher levels of mechanical, chemical and biotic defences than temperate plants. However, comparisons have usually included deciduous species within the temperate group, which confounds the analysis since deciduous species are predicted to have a different strategy with respect to investment, nutrition and defence than evergreen species. In this study we examined levels of defence and nutrition in five evergreen species of Eucryphia occurring along a latitudinal gradient in eastern Australia, grown under common conditions in a glasshouse. From the resource-availability hypothesis we predicted the opposite gradient in defence investment, i.e. that lowest levels of defence will occur in tropical species with potentially high growth rates and annual productivity. However, we found an increase in cell wall content, total phenolics and tannin activity, and a decrease in protein availability, with decreasing latitude and/or increasing mean annual temperature. Hence, there was a trend of increasing defence (although not in leaf toughness) and declining nutritional quality towards the tropics. These latitudinal trends were recorded in both mature and expanding leaves. The same trends were observed in leaves of two species collected from the field, indicating that the results were not peculiar to the experimental growth regime. The latitudinal trend in defence did not support our prediction based on the resource availability hypothesis and may indicate that herbivore pressure is providing an overriding selection pressure, although there are alternative explanations.

Leaf fluctuating asymmetry (FA) is considered an important indicator of environmentally induced stress in plants, but the relationship between herbivory and FA levels is not clear. In this study we compared leaf size and shape, leaf area consumed by herbivorous insects, and FA levels between individuals of Heliocarpus pallidus (Tiliaceae) from two adjacent and contrasting habitat types (deciduous and riparian) in the Chamela–Cuixmala tropical dry-forest biosphere reserve. Ten individuals of H. pallidus were collected in each habitat type. Leaf shape was assessed using geometric morphometric techniques. Results indicated statistically significant differences in leaf shape between individuals from the two habitat types. In individuals from the riparian habitat leaf area (mean = 42.3 ± 1.2 cm2), herbivory levels (mean = 25.5% ± 1.8%) and FA levels (mean = 0.38 ± 0.04 cm) were significantly higher than in individuals from the deciduous habitat (17.2 ± 3.5 cm2; 9.6% ± 1.0% and 0.18 ± 0.04 cm, respectively). Within habitats, significant correlations were found between total leaf area and percentage leaf area removed by insects (R2 = 0.92 in riparian habitats, R2 = 0.9 in deciduous habitats), and between percentage leaf area removed and FA (R2 = 0.70 in riparian habitats, R2 = 0.79 in deciduous habitats). As has been suggested for other plant species, it is possible that the more favourable conditions in the riparian habitat enhance leaf growth, resulting in higher FA. Also, individuals in this habitat might be characterized by lower chemical defence and/or higher nutritional quality, which would explain the higher herbivory levels.

The yellow-throated marten, Martes flavigula, is the only living species of the genus Martes found in subtropical and tropical forests (Harrison et al. 2004). It is distributed throughout central and southern Asia in a wide variety of habitats. Despite its extensive geographical range, the ecology and behaviour of this species has so far received little attention, aside from a study of habitat use (Grassman et al. 2005). Studies on other martens have shown that fruits are an important food resource (e.g. M. martes, Bermejo & Guitian 2000; M. foina, Pandolfi et al. 1996). Thus, they are considered to be important potential seed dispersers (Corlett 1998, Herrera 1989, Willson 1993), as confirmed by recent studies (M. melampus, Otani 2002; M. americana, Hickey et al. 1999; M. foina and M. martes, Schaumann & Heinken 2002). Although no systematic study of the diet of M. flavigula has been conducted (Harrison et al. 2004), it is known to be omnivorous and to consume fruit (Gao & Wang 1987). To date, however, there has been no comprehensive study of frugivory and seed dispersal by M. flavigula (but see Corlett 1998).

Light fluctuations and crown traits were studied for saplings of four tree species in a Costa Rican rain forest. Light fluctuations (1988–1994) were assessed by annual light estimations above saplings, using a visual crown position index. Crown traits in 1994 and growth between 1994 and 1995 were measured. Crown position values varied between 1.5 and 2.5. Of the 70 saplings only four were found at higher light levels (crown position of 3 or 3.5), but for 1–2 y only. Over the 6 y of investigation, 55–75 % of the saplings experienced no or only one light fluctuation, and 25–45 % two or three fluctuations. Crown traits in 1994 were either most strongly correlated with light levels in 1993 (Lecythis) and with light levels in 1991 and 1992 (Dipteryx and Simarouba), or they were not significantly correlated with light levels (Minquartia). It is hypothesised that: (1) the saplings require 1–3 y to establish a crown trait in response to light levels in the forest; and (2) and species that can economically produce a leaf can adjust crown traits more quickly in an environment dominated by low light levels than species that are less economic. Crown trait responses may track environmental changes in three of the four species, in particular in Lecythis. In this latter species, leaf area had no significant effect on growth and survival, whereas light level had a positive effect. Conversely, in the other three species, light levels had no discernible effect on growth and survival (due in part to low variation in crown position in two of these species), whereas leaf area had a positive effect on both.

We tested whether species endemic to Sri Lanka were less able than non-endemics to tolerate disturbed habitats. Small mammals were surveyed in four habitat types along a disturbance gradient (unlogged forest, selectively logged forest, cultivated areas and areas abandoned after cultivation) within and around the Sinharaja rain forest in south-west Sri Lanka. Twenty 90-m×40-m plots were live trapped in each of these habitat types. Twelve taxa: nine rodents (Srilankamys ohiensis, Rattus rattus kelaarti, R. r. kandianus, Mus mayori, M. cervicolor, Bandicota indica, Funambulus layardi, F. sublineatus and F. palmarum) and three insectivores (Crocidura miya, Suncus zeylanicus and Feroculus feroculus) were recorded. Of these, five were endemic to Sri Lanka at the species level (species confined to the island) and six at subspecies level (subspecies confined to the island; other subspecies occurring on the Indian subcontinent). Species richness of small mammals decreased with the magnitude of forest disturbance. The endemic species selectively utilized sites within the forest whilst the majority of the other taxa used both forest and non-forest habitat types or were restricted to the latter. Bird surveys were carried out in the same plots, using sightings and calls. Sixty-six bird species were recorded, of which 21 were endemic species. Twenty endemic bird species preferentially used sites within the forest. The findings suggest that the forest-dwelling endemic species of both small mammal and bird encounter difficulties in tolerating modified landscapes, whilst other taxa are less affected. This highlights the vulnerability of endemic species to forest conversion.

The poor availability of suitable substrate and nutrients strongly limits the distribution and growth of vascular epiphytes in lowland rain forests (Benzing 1990, Nieder et al. 2000). In some epiphyte species nutrition may be assisted by adventitious roots that grow into animal debris in plant cavities such as domatia and bromeliad tanks (Huxley 1980). For epiphyte species lacking these modifications, animals may nevertheless play a substantial role by providing a large proportion of the limited substrate in lowland forests (Catling 1995, Longino 1986). Such associations between epiphytes and nutrient/substrate-providing animals may often be non-specific and commensalistic (Davidson & Epstein 1989, Longino 1986), while highly evolved mutualistic associations occur in the case of ant gardens which are very abundant in neotropical forests (Huxley 1980, Kleinfeldt 1986, Ule 1901). Ant gardens typically are densely inhabited by different epiphytes from various plant families whose seeds or fruits are attractive to the ants and carried into the nest (Davidson 1988). In addition, ants have been suggested to play a role in protection and nutrition of ant-garden epiphytes (Kleinfeldt 1978, 1986). Ants may benefit from epiphytes through increased nest stability (Yu 1994) or nutrition via extrafloral nectaries, fruit pulps or seed arils (Davidson 1988, Kleinfeldt 1986). In this study,we compare the nutrient quality of such ant gardens with other similar substrates rarely inhabited by epiphytes, namely nests and galleries of ants and termites.

The spread of many invasive plants is facilitated through seed dispersal by frugivorous animals. The effectiveness of various frugivores as dispersers of the seeds of Melia azedarach, a highly invasive alien tree species, was evaluated in South Africa in savanna and bushveld vegetation. During 264 h of observation, seven bird species and one bat species were recorded foraging on fruiting trees of M. azedarach. The most common visitors were the dark-capped bulbul (Pycnonotus barbatus) followed by Wahlberg's epauletted fruit bat (Epomophorus wahlbergi), but both species dropped nearly as many seeds as they dispersed. Knysna turaco (Tauraco corythaix) dispersed the highest number of fruits per minute, but occurred in low abundance in our study sites. Seed germination differed significantly between de-pulped fruits and untreated fruits after 2 mo, but was similar after 4 mo. Germination success did not differ between animal-handled and hand-depulped fruits. In contrast to the high germination success in the greenhouse, seedlings showed very low recruitment in the field. Thus, M. azedarach seems likely to benefit from frugivores (particularly dark-capped bulbul and Wahlberg's epauletted fruit bat) dispersing seeds to suitable microsites.

Borassus aethiopum is a dioecious palm tree of African savannas. A stage-classified matrix population model has been parametrized with field data (Lamto reserve, Ivory Coast). It enabled the study of the persistence of the population, and analysis of its sensitivity to different vital rates. Age of palms in each stage were estimated to complete the description of the palm life-history. The main results are: (1) The studied populations are very close to the equilibrium but the stable stage distribution (predicted by the model) and the observed distribution are significantly different indicating a former change in the vital rates. (2) Reproduction seems to be highly delayed (first reproduction on average at 114 y), while the estimated duration of the reproductive part of the life-cycle is relatively short (22 y).

Two mixed-species bird flocks were studied in a high-altitude humid secondary forest in the Andes of Ecuador. Birds were mist-netted and colour-ringed for individual identification. The flocks (A and B) were followed to record structure, dynamics, home range and activity pattern. All observations of the two flocks studied included members from all vertical levels, which is different from flocks of Amazonia. In two nucleus species, some individuals alternated between the flocks, a feature not previously reported. Various tanagers were loosely associated, joining and leaving flocks. Minimum home-range sizes of flocks A and B were 4.2 ha and 7.8 ha, respectively. Some individuals of two species used an area encompassing the home ranges of both flocks. Mean flock sizes in A and B were 21.7 and 44.7 individuals, whereas the mean numbers of species were 13.7 and 21.7, respectively. Number of species and individuals were high compared to even most lowland flocks. Altogether, mixed-species flocks in different habitats and at various latitudinal and altitudinal sites appear to have some features in common, but others are highly distinct. Compared to the great stability of Amazonian flocks, some high-altitude flocks of secondary forest in the Andes appear to be more dynamic and unstable.

There is a perception that sustained frequent fires cause nitrogen limitation over the long term (50–100 y) by volatilizing the nitrogen in soil, plant biomass and litter. Here we test this perception in a South African savanna located in the Kruger National Park. At our study site we compare the effects of 50 y of fire exclusion, season (August and February) and frequency (triennial and annual August and triennial February) of burn on nitrogen cycling and availability. We do this using three different methods to determine nitrogen mineralization; in situ incubations, laboratory incubations and ion-exchange resin bags. On each treatment we established two parallel transects 100 m apart with 10 sampling points per treatment along these transects. Daily mineralization rates for in situ incubations were determined monthly from August 2004 to June 2005 at each of the sampling points. Ion-exchange resin bags were buried (5 cm) at the same points and left in the field from August 2004 to August 2005. In February 2005 five randomly located soil samples from each of the four treatments were collected for laboratory incubations using a 7-cm-diameter soil auger. Regardless of method used our results show that there are no significant differences in daily nitrogen mineralization rates after 50 y of different burning treatments from annual burning to fire exclusion. In fact, both in situ and laboratory incubations show that nitrogen availability is higher on the annual burn than the fire exclusion (0.16 μg g−1 soil d−1 vs. 0.11 μg g−1 soil d−1 and 0.46 μg g−1 soil d−1 vs. 0.30 μg g−1 soil d−1 respectively). Perceived negative effects of fire on ecosystem functioning has curbed the use of fire as a management tool with fire often actively suppressed in savanna. The results of our study show that fire can be used more vigorously in mesic African savanna to manipulate tree:grass ratios without negatively affecting the nitrogen cycle.

The Bornean climber, Nepenthes bicalcarata, is unique among plants because it is both carnivorous and myrmecophytic, bearing pitcher-shaped leaves and the ant Camponotus schmitzi within tendrils. We explored, in the peat swamp forests of Brunei, the hypothesis that these ants contribute to plant nutrition by catching and digesting its prey. We first tested whether ants increased plant's capture rate. We found that unlike most plant-ants, C. schmitzi do not exhibit dissuasive leaf-patrolling behaviour (zero patrol on 67 pitchers of 10 plants) but lie concealed under pitcher rim (13 ± 6 ants per pitcher) allowing numerous insect visits. However, 47 out of 50 individuals of the largest visitor dropped into the pitchers of five plants were attacked by ants and the capture rate of the same pitchers deprived of their ambush hunting ants decreased three-fold. We then tested whether ants participated in plant's digestion. We showed in a 15-d long experiment that ants fed on prey and returned it in pieces in seven out of eight pitchers. The 40 prey deposited in ant-deprived pitchers remained intact indicating a weak digestive power of the fluid confirmed to be only weakly acidic (pH ~5, n = 67). The analysis of 10 pitcher contents revealed that prey, mainly ants and termites, was very numerous (~400 per pitcher per plant) and highly fragmented. Altogether, these data suggest a positive effect of C. schmitzi on both prey intake and breakdown. This ant–plant interaction could thus be a nutritional mutualism involving the unusual association of carnivory and myrmecotrophy.

Spatial analysis can be used to relate the patterns of tree species to their regeneration syndromes – pioneer to late-successional – and is a first step in refining hypotheses about the species traits and biotic and abiotic factors that give rise to forest community dynamics. This study examines the spatial pattern of the most abundant trees in three 0.45-ha plots in species-poor lowland rain forests on oceanic islands in Tonga, Western Polynesia, that experience frequent natural disturbance and have a 3000-y history of shifting cultivation. We contrast secondary vs. remnant late-successional forest, with particular attention paid to the spatial dispersion and clustering of tree species, and the presence of spatial dependence in the density of seedlings and saplings. Shade-tolerant species were not strongly clustered at any scale. They did not appear to be dispersal limited, in late successional forest, and only some showed patterns consistent with density-dependent mortality (more clumped when small). Shade-tolerant species were more clumped in secondary forest, and may be dispersal-limited there because vertebrate dispersers prefer primary forest. Shade-intolerant species were clumped in gaps in late-successional forest, but some were also clumped in secondary forest, indicating that they too may be dispersal limited during secondary succession. We also compared the species composition of seedlings and saplings in the centre of plots with trees in the surrounding area and inferred that active dispersal (by vertebrate frugivores) contributed as much as 50% to site species richness.

Army ants (Formicidae: Ecitoninae) are top predators in neotropical forests. Army ant raids support a community of diverse organisms, including birds that attend the raids to collect prey. While elevation and forest fragmentation influence army ant and insectivorous bird communities, their effects on the interaction between army ants and bird species is unknown. We studied the size and species composition of bird flocks attending army ant swarms in forest fragments and continuous forest across an elevational gradient (1100–1680 m asl) in a neotropical montane region (Monteverde, Costa Rica). We observed a total of 41 bird species attending army ant swarms. Neither the number of birds, nor the total body mass of birds, nor the number of bird species in attending bird flocks was related to elevation. However, we found a higher bird species richness, larger flock size and greater total body mass of birds attending army ant swarms in continuous forest. Continuous and fragmented forest shared many attending bird species in common, but there was elevational segregation of attending bird species. Some montane endemic birds, and neotropical migrants, attend swarms regularly and use army ant raids as a food source.

Constructing community fruit–frugivore networks has proved challenging in tropical forests to date, particularly in lowland Amazonia, which hosts the most diverse spectrum of frugivorous vertebrates and morphological fruit types worldwide. We assessed data on fruit resource production, frugivore assemblages and corresponding fruit–frugivore networks in two contrasting forest types along the Rio Juruá of western Brazilian Amazonia: seasonally flooded várzea (VZ) and unflooded terra firme forest (TF). Over 2 y we conducted monthly surveys of fruit patches and medium- to large-bodied vertebrate frugivores within three 100-ha plots (two TF, one VZ), supplemented by fruit surveys along 67 5-km transects distributed across two contiguous forest reserves (41 TF, 26 VZ). Observations of trophic interactions were supplemented by semi-structured interviews with experienced hunters and fishermen from 16 local communities. The resultant binary networks contained low proportions of all potential interactions (TF: 25.7%, VZ: 19.4%) between 36 functional groups of frugivores and 152 plant genera and, while we report significant heterogeneity in fruit resource use among broad frugivore guilds within each forest type, recursive partitioning analysis failed to clearly match differences in fruit selection to fruit traits. The annual flood pulse in várzea forests had an overriding influence on the species turnover of both fruit resources and frugivores between the two forest types, with higher-order effects on network structure.

Ecosystem pool of phosphorus (P) was determined as the sum of above-ground vegetation, roots, necromass and soils to 1 m deep in a tropical rain forest in Sabah, Malaysia. Relationships among soil P fractions, acid phosphatase activity and fine-root biomass across soil horizons were also determined to understand P availability. Ecosystem pools of P, and of simultaneously quantified nitrogen (N) and carbon (C) were 3.4, 12 and 370 Mg ha−1, respectively. Only 2.6% of the total ecosystem P was in the above-ground vegetation, contrasting to C (60%) and N (16%). Canopy foliage of dominant tree species showed an extremely high N to P ratio of 31.5, which implied the excessively short supply of P compared with ample N. Soil P primarily consisted of recalcitrant occluded fractions (78–91%) and only 4% was labile. Approximately three-quarters of labile soil P was an organic fraction (Po). The concentration of labile Po did not differ between soil horizons, while both phosphatase activity and fine-root density were the greatest in the topsoil (top 5 cm) and dramatically decreased with depth. This suggests that trees depend on the acquisition of P from the labile Po in the topsoil, despite a greater amount of labile P in the subsoil. Trees with a high foliar N/P ratio may invest N to acquire P from the topsoil by secreting phosphatase that consists of proteins, rather than investing C to extending roots to scavenge P in the subsoil.

Our study investigated the influence of termitaria on vegetation utilization by elephants in Chewore North, Zimbabwe. Ten termite mounds and ten similar sized control plots were surveyed for soil nutrients, tree species diversity and plant biomass removal by elephants. Termite mounds had higher mean (± SE) concentrations of P, Ca, Mg and Na (0.15 ± 0.01, 48.8 ± 9.32, 5.78 ± 1.59 and 0.47 ± 0.12 meq per 100 g respectively) than control plots (0.05 ± 0.01, 3.33 ± 0.56, 1.53 ± 0.22 and 0.19 ± 0.02 meq per 100 g). However, Shannon Wiener index of tree diversity did not vary significantly between termite mounds (1.13 ± 0.280) and their control plots (0.827 ± 0.469). Contrary to most studies investigating patterns of vegetation utilization by large mammalian herbivores on termitaria, biomass removal was five times more on control plots than termite mounds. No difference in biomass removal was noted for Colophospermum mopane which had enough replicates for statistical analysis both on termite mounds and control plots. Our study negates the hypothesis that nutrient-rich soil patches will act as feeding hotspots for large mammalian herbivores. We concluded that vegetation utilization by elephants may be tree species specific, particularly in nutrient-rich environments.