Parasites are ubiquitous in wild animals, with host-specific life histories considered as major determinants of prevalence and parasite assemblage patterns. It is predicted that habitat differences in logged rain forests influence population performances of small mammals and consequently may change the infection patterns of local animal populations with regard to endo- and ectoparasites. We investigated patterns of helminth species assemblages (Nematoda, Platyhelminthes) in two rat species (Leopoldamys sabanus, Niviventer cremoriventer) and two tree shrew species (Tupaia tana, T. longipes) in three logged and three unlogged rain forests in Borneo by examining 337 faecal samples with non-invasive faecal egg count (FEC). Nematode eggs prevailed in 95% of all samples with up to five (mean 1.9 ± 1.1) morphotypes. Whereas members of Strongylida were most prevalent in L. sabanus, T. tana and T. longipes, Spirurida dominated in N. cremoriventer that revealed at the same time the lowest average nematode prevalence and FEC. Cestode eggs were only found in L. sabanus and T. tana. Composition and abundance patterns of the parasitic helminth assemblages were influenced by logging. As hypothesized, species richness of nematode morphotypes and mean number of infections per host of T. longipes were larger in logged than in unlogged forest. In contrast, L. sabanus was more heavily infected with cestodes in unlogged than in logged forest and also revealed larger egg counts for strongylids and spirurids in unlogged forest. Our results suggest that forest degradation and altered environmental conditions influence helminth diversity and infection patterns of small mammals with contrasting trends among host species. The inconsistent logging-induced changes in helminth assemblages from different hosts indicate that specific sets of habitat-host-parasite interactions are uniquely influenced by the effects of logging. Consequently, predictions on changes of parasite diversity and prevalence with regard to habitat disturbance need to be based on the individual life histories of the hosts (and the parasites).

Following the 2003 invasion of the armoured scale Aulacaspis yasumatsui to Guam, changes to population traits of the dominant Cycas micronesica were determined. Belt transects with a width of 4 m and an average length of 120 m were established in October 2004 to document plant mortality until January 2011. Stem height, basal diameter and leaf number were also measured for each plant and used to determine density, demography and allometric relationships. Allometric traits and a left-skewed demographic structure of the pre-invasion C. micronesica habitat documented a thriving population with high recruitment potential. Aulacaspis yasumatsui dispersed into the study site 4 mo after the initial census. All seedlings were killed within 9 mo and all juvenile plants were killed within 40 ± 10 mo. Mortality reached 92% by 6 y after chronic scale infestations. Allometry and demography of the 2011 survivors described a collapsing C. micronesica population of stressed and reproductively challenged trees with no recruitment. This classic example of the enemy release hypothesis has resulted in a homogeneous decline in plant density from 2007–2011. The trend predicts extirpation of C. micronesica from west Guam habitats by 2019.

We investigated the effect of seasonality on tree phenology in the tropical montane rain forest of southern Ecuador and analysed possible triggering factors. Two hypotheses were tested: (1) Interspecific synchronization of flowering and fruiting phenology is higher at study sites with pronounced rainfall seasonality compared with sites within perhumid forests. (2) Proximate causes for flowering in closely situated seasonal and perhumid sites are either photoperiodicity or climatic factors. Two nearby study sites with contrasting precipitation patterns were selected at the same altitude east and west of the western Cordillera. Eighty trees from 13 species were observed over a 2.5-y period. Three species were common to both study sites. Phenological and climate data were collected and cross-correlated by conducting a time-series analysis. At the perhumid site, very clear annual patterns of phenological behaviour could be observed for most of the selected rain-forest tree species, but with a poor interspecific synchronization. On the nearby seasonal site in contrast, most species showed high synchrony in their phenological behaviour coinciding with the dry season. There is strong evidence that flowering is induced not by one factor alone: we identified photoperiodic control, radiation and precipitation as possible proximate causes for both sites. Our results confirm studies which state that these factors are closely linked to each other in the tropics.

Our study presents experimentally based results on how large herbivore species affect savanna vegetation and thus murid rodents in the Hluhluwe-iMfolozi Park in KwaZulu-Natal, South Africa. We permanently excluded groups of large herbivore guilds of various body sizes (ranging from white rhino to hares) from sixteen 40 × 40-m plots of vegetation by using different fence types. We determined grass species composition and vegetation height and collected capture–mark–recapture data on murid rodents. Nutrient concentrations of the dominant grass species and rodent diet compositions were analysed. We found that herbivore species of different body sizes had different effects on murid rodents. The exclusion of medium-sized herbivores, such as warthog, impala and nyala increased the abundance of high-quality grass species, especially Panicum maximum. However, the dominant rodent species Lemniscomys rosalia preferred the most abundant grass species, rather than high-quality grasses. The absence of large bulk feeders, such as zebra, buffalo and white rhino led to an increase in vegetation height. In response, tall vegetation promoted both rodent abundance and species diversity and altered rodent species composition. Ultimately, our results indicate that the greatest effect on murid rodents came from the reduction of vegetation cover by large bulk feeders, which likely increased rodent predation risk.

Mean annual quantities of solar radiation absorbed during various stages of regeneration of a tropical rain forest in the upper Rio Negro valley of Colombia and Venezuela were estimated for the consecutive intervals between clear-cut and 1,3, 10, 20, 35, 60, 80 and 200 years of growth. Forest phytomass and litter fall data from each of these stages were used to calculate the mean annual net dry matter production per unit of absorbed photosynthelically active radiation (PAR), the PAR conversion efficiency. The quantities of PAR absorbed by the forest stands were calculated from the leaf area index values with an extinction coefficient for PAR of 0.74, a PAR albedo of 0.04, and an annual mean incoming PAR of 2.86GJ m-2y-1. Efficiency decreased with increase in successional stage. During the first 10 years of regrowth, the efficiency of conversion of PAR into above-ground phylomass averaged 0.23 g MJ-1, decreasing to 0.07 g MJ-1 over the following 50 years. Inclusion of annual root production in the calculations resulted in a small increase in PAR conversion efficiency; however, efficiency was more than doubled for some periods when the annual leaf and twig lillerfall were included. Efficiency values for above-ground production were much lower than PAR conversion efficiency values estimated for above-ground production of temperate forests.

Seed removal by rodents was investigated for Manilkara huberi and Chrysophyllum lucentifolium in a French Guianan forest. According to the escape hypothesis, seed survival was expected to be greater in populations of low conspecific adult density, while on the contrary, under the satiation hypothesis, it was expected to be greater in populations of high density. The two plots under study showed opposite densities for the two studied tree species. Therefore, according to both hypotheses, seed survival at each plot was expected to be opposite between species. To assess seed fate, seeds were thread-marked in order to relocate them after removal and to determine whether they were consumed or scatterhoarded by rodents. Contrary to what was expected, our results showed that both M. huberi and C. lucentifoliumhad better survival in the same plot. This suggests that seed fate for both study species was not influenced by the density of conspecific adult trees, but was rather affected by other habitat characteristics, likely the global resource abundance. Variation in seed predation rates of both species seemed largely related to their respective fruiting period, while scatterhoarding rate seemed more affected by intrinsic seed characteristics.

Carbon and nutrient stocks in below-ground biomass have rarely been investigated in tropical montane forests. In the present study, the amounts of carbon, nitrogen, phosphorus, sulphur, potassium, calcium and magnesium in root biomass were determined by soil coring and nutrient analysis in forests at three altitudes (1900, 2400 and 3000 m) in the Ecuadorian Andes. Root biomass increased markedly from 2.8 kg m−2 at 1900 m and 4.0 kg m−2 at 2400 to 6.8 kg m−2 at 3000 m. The contribution of coarse roots (> 2 mm in diameter) to total root biomass increased from about 70% at 1900 m to about 80% at higher altitudes. In fine roots (≤ 2 mm in diameter), concentrations of nutrients except calcium markedly decreased with altitude. Therefore, the nutrient stocks in fine roots were similar at 1900 m and 3000 m for nitrogen and sulphur, and were even lower at higher altitudes for phosphorus, potassium and magnesium. In coarse roots of Graffenrieda emarginata concentrations of nutrients were substantially lower than in fine roots, and were little affected by altitude. The data suggest that the importance of coarse roots for long-term carbon and nutrient accumulation in total plant biomass increases with increasing altitude.

To assess the impact of habitat fragmentation on tropical avian communities, we sampled lowland forest birds on six land-bridge islands and two mainland forest sites in Lake Kenyir, Peninsular Malaysia using timed point counts, hypothesizing that insectivorous birds are the worst affected guild. We used an information-theoretic approach to evaluate the effects of area, isolation, primary dietary guild (omnivore, frugivore and insectivore) and their interactions in predicting species richness, abundance and diversity. Our analysis showed that a model that considered the effects of area, dietary guild and their interaction best explained observed patterns of species richness. But a model considering both area and dietary guild best explained the variation in abundance. Notably, insectivorous birds were singled out as the dietary guild most sensitive to fragmentation, followed by frugivorous and omnivorous birds and hence provide support for our hypothesis. Assemblages of insectivorous birds were clearly depauperate on anthropogenic forest islands in Lake Kenyir and are consistent with forest fragmentation studies in the Neotropics. Given their specialized foraging ecology and diversity, conservation of intact communities of insectivorous bird guilds in Malaysia will be critical for maintaining predator–prey interactions in lowland tropical forests.

This study examined the foraging behaviour of a resident bird species, the rufous-capped warbler (RCWA, Basileuterus rufifrons), in a shaded-coffee farm in Chiapas, Mexico. Unlike many resident species that use shaded-coffee agroecosystems seasonally, RCWAs do not move to other habitats when migrants are present. RCWA foraging was compared when migrant birds were present (dry season) and absent (wet season). It was hypothesized that RCWAs would exhibit a seasonal foraging niche shift because of resource competition with migrants. Observations from both the canopy and coffee understorey show that RCWAs foraged almost equally in both vegetative layers during the wet season although they were more successful foraging in the canopy. In the dry season, migrants foraged primarily in the canopy and RCWAs shifted so that 80% of RCWA foraging manoeuvres were in the understorey. At that time RCWAs foraged less successfully in both vegetative layers. Avian predation in the dry season was found to reduce densities of arthropods by 47–79% in the canopy, as opposed to 4–5% in the understorey. In the canopy, availability of large (>5 mm in length) arthropods decreased by 58% from the wet to dry season. Such resource reductions could have caused the RCWA foraging niche shift yet other alternative or additional hypotheses are discussed. Shifts in foraging niche may be a widespread mechanism for some small insectivorous residents to avoid seasonal competition with abundant migrant species.

We investigated the effects of rainfall on the distribution and abundance of the satyrine butterfly Ragadia makuta in selectively logged and unlogged forest on Borneo. In 1997-98, there was a severe El Niño-Southern Oscillation (ENSO) drought, and annual surveys over a 4-y period showed that abundance of R. makuta was greatly reduced during the drought, but that populations quickly recovered after it. Monthly surveys over a 12-mo period of typical rainfall showed that high rainfall in the month preceding surveys significantly reduced butterfly abundance. Butterfly abundance and distribution did not differ between selectively logged and unlogged areas in either monthly or annual surveys and there was no difference between selectively logged and unlogged areas in the pattern of post-drought recovery. These results indicate that the abundance of R. makuta was significantly reduced both after high rainfall and during severe drought, but that these impacts were short-lived and were not affected by habitat disturbance. ENSO droughts on Borneo naturally often lead to widespread forest fires and thus impacts of ENSO events for butterflies are more likely to be due to indirect effects of habitat loss, rather than direct effects of drought on butterfly population dynamics.

Tropical forests around the world contain animals that scatter-hoard fruits and seeds but few are known in Australian tropical forests. This study used both direct observation and spool-and-line tracking of simulated fruits to demonstrate that Australia's smallest kangaroos disperse large numbers of rain-forest fruits and seeds. They did so in two ways, either by scatter-hoarding or by carrying them away from the source to devour the flesh before dropping the seed on to the litter surface. The fruits used included a range of fruit types but particularly species with large fleshy fruit. Caches occurred as a single fruit pressed into the soil and covered with litter a mean distance of 17 m (±2.7 SE) and up to 68 m from the source. Musky rat-kangaroos handled up to 2700 fruits ha-1 mo-1 and they dispersed up to 900 fruits ha-1 mo-1 and cached up to 690 fruits ha-1 mo-1. This behaviour is a significant example of convergent evolution, which reflects similar behaviour found in agoutis, acouchies and squirrels on other continents.

Tropical rain forests have a high richness of plant species. However, the richness of insect species associated with the forest canopy is still poorly known. Estimates of arthropod fauna have followed several approaches from surveys on a single or few trees (Erwin 1988,1990) to regional sampling of specific insect guilds such as gall-inducing insects (Fernandes & Price 1988, Lara & Fernandes 1996, Price et al. 1998).

Oil palm plantations are rapidly expanding in tropical areas, although the nature of the impacts on the functional roles of the different species in the ecosystem is poorly understood. The present study is the first assessment of how oil palm affects the functional diversity of birds in the Brazilian Amazon and tests the hypothesis that converting forest to oil palm decreases functional diversity of bird communities, selecting species more tolerant to environmental disturbances. We conducted point counts to survey bird communities in 16 plots in the eastern Amazon. We sampled 32 points in riparian forest, 128 in oil palm and 160 in forested habitats. To test whether the conversion of forest into oil palm plantations affects functional diversity of birds we calculated the FD (Functional Diversity) and FRic (Functional Richness) indices. To examine whether oil palm plantations select species functionally more similar than expected by chance we used a null model (SES.FD). FD was significantly higher in the forest plots in comparison with riparian forests and oil palm, and lower in oil palm when compared with riparian forests. FRic, in turn, was greater in forest plots than in oil palm and in riparian forest. These results show that the conversion of forested areas to oil palm represents a great loss of functional strategies. The SES values indicate that in forested habitats bird communities tend to be functionally clustered while in the oil palm they are functionally overdispersed. The functional traits most affected by oil palm were those associated with diet and foraging stratum. In short, oil palm plantations reduced functional diversity of birds, although the presence of riparian forests within the plantations and the fragments of forest adjacent are extremely important for the maintenance of ecosystem services.

The structure and functioning of Acacia koa-Metrosideros polymorpha forests between 1200 and 1800 m elevation on the island of Hawaii are being threatened by Passiflora mollissima, an aggressive introduced liana from South America. This study was done to evaluate the short-term decomposition dynamics of Passiflora and selected native leaf and twig litter. The nutrient-rich, non-sclerophyllous Passiflora leaves completely disappeared in less than 5 mo. The estimated time for native leaf litter to lose 95% of initial dry weight ranged from 1.65 y for N-rich Acacia phyllodes to 6.67 y for Cibotium glaucum; for woody litter, the time ranged from 4.5 y for Acacia twigs to 23 y for Acacia bark. Except for Cibotium frond litter, decay rates were significantly correlated with initial lignin-ash ratios. Passiflora litter did not accelerate decomposition of Acacia and Metrosideros leaf litter. Passiflora, Acacia, and Metrosideros leaf litter showed net mineralization of N, P, Ca, K, and Mg during the study. Cibotium frond litter showed significant accumulation of N, Ca, and Mg; P levels stayed constant and K was rapidly lost. In general, twigs experienced a net loss of most nutrients, while bark experienced either no change or a significant net gain of nutrients. Nutrient cycling has increased in P. mollissima infested forests.

In the Central Amazon we investigated whether seedling performance (survival, and relative growth rates in height and leaf numbers) was affected by initial seedling size (height and leaf numbers) in habitats that varied in their degree of human disturbance: cattle pasture, young secondary forest, 1-ha forest fragment and old-growth forest. Additionally, effects of photosynthetically active radiation (PAR), litter standing crop (LSC) and insect herbivory were evaluated 12 mo after transplantation in seedlings from the native canopy trees Chrysophyllum pomiferum, Micropholis venulosa and Pouteria caimito. Seedling performance changed rank across the understorey environment depending on species. Seedlings of Chrysophyllum thrived in all conditions but under high PAR, Micropholis thrived only in intermediate light conditions, whereas Pouteria thrived under high PAR. Effects of initial seedling size, PAR and herbivory after 1 y were specific to species, whereas LSC had no effect on performance. Initially larger seedlings resulted in lower survival for Chrysophyllum and Pouteria. Herbivory affected seedling performance in all species. Negative effects of herbivory were intensified under low PAR. Overall, our results showed that, as seedlings, species of the same family and characteristic of old-growth forests respond differently to the environmental constraints present in contrasting human-disturbed conditions. Larger seedlings may not always present greater tolerance to physical and biotic mortality risks.

This paper describes estimates of canopy openness and associated light availability in the understorey of a north-east Australian rain forest before and immediately after a tropical cyclone. On the basis of 20 hemispherical (fisheye) canopy photographs it was shown that direct, diffuse and total site factors increased significantly as a result of the slight-to-moderate canopy disturbance caused by the cyclone. In the understorey, median total site factors ranged from 2.5–3.4% before the cyclone and from 6.0–8.6% after the cyclone, representing a 2- to 3-fold increase in potential light availability. Following the cyclone, mean relative gap frequencies increased substantially at all altitudes but particularly at canopy positions more than 70° above the horizon. Cyclone-induced canopy disturbance not only reduced the complexity of the understorey light regime but may have also increased the seasonal variability of light within the understorey of the forest during the interval of canopy recovery. The implications of these results for the ecophysiology of understorey tree seedlings and saplings at several temporal scales are discussed.

White-eyed vireos (Vireo griseus) winter in the forests and secondary growth of the Yucatan Peninsula where Bursera simaruba (Burseraceae) is an abundant tree. Twenty-five per cent of all white-eyed vireos observed foraging visited Bursera trees. In addition, presence and abundance of territorial white-eyed vireos in small forest patches were correlated with the size of the Bursera crop. Vireos were the most reliable dispersers of Bursera seeds. These birds visited 32 of 35 trees observed for at least three hours. They accounted for approximately half of all bird visits, and two-thirds of the seeds dispersed. Most of the other species rarely visited (<5% of visits) or failed to remove seeds from the tree.

Peculiarities of phenology and fruit structure may contribute to the tendency of Bursera to be dispersed by relatively few species. The capsules of Bursera fruits do not open when the fruit ripens; birds apparently locate ripe fruit using visual cues, although these are few. In addition, only a small portion of the crop ripens daily over a 7- or 8-month period. The vireo-Bursera simaruba relationship, found regionally on the Yucatan Peninsula, may result from the prolonged fruit ripening period (October-March), the relatively depauperate frugivore community and the relatively high density of small Bursera trees in the hurricane-disturbed dry forests.

Small trees at all times, and all trees from October to February, depend upon territorial vireos for continuous, highly efficient local dispersal of a small number of fruits. In March and April residual fruits ripen rapidly and synchronously, attracting a greater variety of visitors for broad spectrum dispersal during a period of food scarcity. Thus, Bursera has an unusual two-phase phenological pattern, perhaps alternately to take advantage of both specialized and opportunistic dispersers.

The red land crab (Gecarcoidea nalalis) is the major collector of fruits and seeds from the rain forest Moor on Christmas Island, Indian Ocean. At three sites, they rapidly removed fruits and seeds of 17 species tested (usually within 12 h after placement) and most were taken to crab burrows. Direct observations of seed predation, and application of estimated chelar forces of red crabs indicated that seeds of many species, especially those with thin seed coats, are likely to be killed through handling. However, removal of some resistant seeds to burrows may be favourable for seedling establishment when canopy gaps occur. Fruit removal rates by crabs were positively related to nitrogen concentration in fruit tissues but negatively correlated with condensed tannins. These observations suggest that seed predation by land crabs may affect the success of colonization and the relative abundance of plants on oceanic islands.

Spatial and temporal variation in seedling dynamics was assessed using records of community-wide seedling demography collected with identical monitoring methods at four tropical lowland forests in Panama, Malaysia, Ecuador and French Guiana for periods of between 3 and 10 y. At each site, the fates of between 8617 and 391 777 seedlings were followed through annual censuses of the 370–1008 1-m2 seedling plots. Within-site spatial and inter-annual variation in density, recruitment, growth and mortality was compared with among-site variability using Bayesian hierarchical modelling to determine the generality of each site's patterns and potential for meaningful comparisons among sites. The Malaysian forest, which experiences community-wide masting, was the most variable in both seedling density and recruitment. However, density varied year-to-year at all sites (CVamong years at site = 8–43%), driven largely by high variability in recruitment rates (CV = 40–117%). At all sites, recruitment was more variable than mortality (CV = 5–64%) or growth (CV = 12–51%). Increases in mortality rates lagged 1 y behind large recruitment events. Within-site spatial variation and inter-annual differences were greater than differences among site averages in all rates, emphasizing the value of long-term comparative studies when generalizing how spatial and temporal variation drive patterns of recruitment in tropical forests.

The influence of a rainfall gradient on the distribution and species richness of some groups of wood-inhabiting basidiomycetes was explored in Costa Rican tropical forests. The relationships between these fungi and wood size and decay stage were also studied. Basidiocarps of all poroid and some corticoid fungi were recorded in three plots of 30 logs in each of dry, moist, and wet forests. The logs were surveyed three times during one year, covering all seasons. The species richness gradient was inversely related to the rainfall gradient, with most species in the dry forest (51), least in the wet forest (37), and intermediate in the moist forest (44). A total of 102 species were identified. Only six species occurred at all three sites. Two of the four most common species were new to science. The composition of wood-inhabiting fungal species in the dry forest varied from both the moist and the wet forest, while species composition in the two latter forest types was difficult to distinguish. Both frequent and rare species utilized the different decay stages as expected from availability of substrate. Perennials and rare species tended to occur on large logs in the dry forest, while all species tended to occur on large logs in the moist forest, but not in the wet forest.