One possible mechanism underlying species losses in the tropics is an increase in predation due to habitat degradation. Relative levels of predation at three heights (ground, 1–1.5 m, > 5 m for nests and > 3 m for caterpillars) were compared across a gradient of disturbance in the Subic Bay Watershed Forest Reserve, Philippines over a 2-mo period. Four 750-m transects were established in each habitat type (closed-canopy forest, open-canopy forest, rural areas) where artificial nests and caterpillar models were placed within 10-m-radius plots and checked after a 5-d exposure period. Nests in open-canopy forest were least predated (16.7%), with predation in rural areas (58.3%) being higher than in closed-canopy forest (32.8%). Predation on nests at 1–1.5 m was significantly lower than ground nests. General linear mixed model analysis suggested that effects of habitat type on nest predation differed among heights. Attacks on caterpillars increased with disturbance (46.1–59.4%), but height was not found to have a significant effect on predation. Markings on plasticine models, camera traps and live traps were used to establish possible predators. Shifts in predator dominance among the habitats were observed. Vegetation cover, tree density and small mammal abundance were not correlated with mean predation in the transects.

A quantitative analysis of the effect of fire regime on the abundance of common lizard species and genera and the species richness of two lizard groups in Kakadu National Park (12° S) is presented. A surprising range of relationships between species abundance and components of fire regimes was revealed. Carlia amax, Heteronotia binoei and Carlia gracilis appear to be fire-sensitive, Diporiphora bilineata and Carlia triacantha are favoured by early hot fires, Cryptoblepharus plagiocephalus seems relatively unaffected, Carlia foliorum seems very tolerant of fires, while Ctenotus and Sphenomorphus spp. are favoured by low intensity, patchy fires with high intensity spots.

Lizard species experiencing the high-frequency fire regimes of the savannas and dry forests of the Australian wet-dry tropics are not able to select habitat at different stages of regeneration after fire but select habitat produced by fires of different types. The implication for management is that no one fire regime is optimal for the fauna as a whole. A range of fire regimes within a park should be maintained in order to retain the whole fauna.

Pollen analysis of a 150-cm-long core from Pantano de Pecho (0°20′S, 78°37′W) at 3870 m altitude in the Ecuadorian páramo documents altitudinal migrations and the composition of the upper forest line prior to deforestation. Four successive radiocarbon dates of 293 ± 41 14C y BP, 498 ± 40 14C y BP, 626 ± 33 14C y BP, and 729 ± 44 14C y BP show that the record includes the last c. 730 radiocarbon y, corresponding to the last c. 660 calendar years (cal y BP). The natural upper forest line was at a minimum altitude of 3400-3500 m between c. AD 1290 to 1315 (zone 1), from c. AD 1315 to 1350 at 3500-3600 m (zone 2), from c. AD 1350 to 1640 at 3600-3700 m (zone 3), from c. AD 1640 to c. 1765 at 3750 m (zone 4), and from c. AD 1765 to the present at 3700-3650 m (zone 5). The most important taxa were Alnus, Hedyosmum, Miconia, other Melastomataceae, Gunnera and Solanaceae. Since c. AD 1350 Podocarpus was continuously present with low abundance, but possibly not close to the upper forest line. Rarer elements of the upper montane forest were Dodonaea, Myrsine, Weinmannia, Myrica, Myrtaceae, Sapium, Juglans, Piper, Euphorbiaceae and Rubiaceae. Human disturbance and deforestation are shown by the presence of Rumex, Spermacoce pollen and charcoal particles. We surveyed the vegetation composition from isolated forest patches located between 3650 m and 4300 m. TWINSPAN analysis indicates forest patches up to 3950 m have a similar floristic composition to closed forest below the upper forest line. We argue that this apparent similarity does not necessarily mean that the slopes between 3750 and 3950 m were covered by closed forest in the past.

A total of 52,467 wind-dispersed seeds from 14 tree and 32 liana species fell into 1720 seed traps in 43 paired light-gap and adjacent forest sites on Barro Colorado Island, Panama. Summed at the community level, many more wind-dispersed seeds were collected from light-gaps (61%) than from forest sites (39%). They accumulated from March through May, 1984 to a density of 328 m-2 in gaps and 207 m-2 in forest sites. In contrast, only 33% of the total of 2782 non-wind-dispersed seeds were collected in gaps. Due to the extreme heterogeneity of the seed rain, these differences between gap and forest sites were not statistically significant at the community-level. Gap sites received more wind-dispersed seeds than adjacent forest sites in only 20 of 43 locations and in 13 of 20 species, especially those with individuals of high fecundity near gap sites. Of the estimated 105 million wind-dispersed seeds contributing to the seed rain of the 50 ha study plot, only 4.1% were dispersed to the rare gap sites that enhance the establishment and growth of seedlings for many of these species.

A study of seedling demography of three shade-tolerant canopy tree species (Quararibea asterolepis, Trichilia tuberculata, and Tetragastris panamensis) was initiated to integrate with long-term studies of tree fruit production and of tree population dynamics on Barro Colorado Island, Panama. Over a five-year period, all seedlings (height <50 cm) and small saplings (height ≥50 cm to dbh 1 cm) were measured and monitored in permanent tree-centred transects (N = 10–11 trees per species). Survival rates increased with plant size class and were similar among species. Maximum height growth rates increased with increasing plant size, but average growth rates did not; this disparity suggests the importance of release from understorey suppression for long-term recruitment success. Among the three species, Quararibea had the lowest standing seedling densities and almost no sapling recruitment, whereas Tetragastris had the highest densities of both seedlings and saplings; Trichilia seedling and sapling densities were intermediate. In all three species, a few trees produced very high seedling and sapling densities in comparison with the sample average. All three species exhibited a year of exceptionally high new seedling recruitment during the study period; these good years were not coincident among the species but instead reflected the species' phenological differences. Since seedling survival becomes relatively constant and high after the first few years of life (c. 80% y−1), such large new cohorts persist as a year-class effect in the seedling population and thus maintain seedling numbers over time. The interspecific differences in seedling and sapling dynamics were consistent with overall 10-year trends of a declining Quararibea population, a stable Trichilia population, and an increasing Tetragastris population.

For many tropical forests a tendency for fruit production to fluctuate seasonally has been established, with pronounced peaks of abundance and periods of fruit scarcity during which a few important resources maintain frugivore communities. However, there is a lack of studies in subtropical forests on community phenology and on the identification of important resources. In this study, community-wide fruit availability and its use by the local frugivore community was investigated in the subtropical coastal dry forest of Oribi Gorge Nature Reserve, South Africa over 13 mo from July 1997 to July 1998. Along 19.5 km of phenology trails, 940 individuals of 96 plant species bearing fleshy fruits were monitored twice per month and fruit-eating animals observed. Although some fruit was available all year round richness of both fruiting species and fruit abundance showed a seasonal pattern with peaks at the end of August to beginning of October (i.e. before the rainy season) and March to May (i.e. after the rainy season). Periods of fruit scarcity were found in July and August (i.e. during the long dry season) and in November and December (i.e. during the rainy season). Fruits of 23 plant species were observed being eaten by 18 species of bird and two of monkey. Highest animal numbers were attracted by Ficus thonningii, a species that fruited asynchronously during most of the year and during periods of fruit scarcity, and provided high overall fruit biomass. The importance of this species as a potential keystone resource for the frugivore community is discussed.

Transformation of tropical forests is likely to affect seed-dispersal patterns and influence the composition of epiphytic plant communities in human-altered habitats. We tested this hypothesis by carrying out a comparative study of seed influx, survival and growth of transplanted seedlings of epiphytic bromeliads among isolated trees in six pasture areas, six forest edges and six forest sites in a montane area in Costa Rica. In total, 72 traps trapped 1285 seeds over a 2-mo period in the dry season of 2003. For all four investigated bromeliad genera, Catopsis, Guzmania, Tillandsia and Werauhia, the number of trapped seeds in each habitat followed a pattern similar to the number of fruiting individuals in the vicinity of the traps. Traps in forest edges (30) were 1.9 times more likely to collect seeds than traps at forest interiors (30) and pasture trees (12), the latter showing similar probabilities of catching seeds. After 1 y, survival and growth of 3660 transplanted seedlings from three bromeliad species was significantly higher in forest interiors, providing no explanation for the lower abundance of fruiting adults in that habitat. These results suggest that the successful establishment of epiphytic bromeliads in forest interiors is mainly dispersal-limited. If corroborated, differences in abundance among species at each habitat are likely related to differences in growth rates and reproductive success. Further studies on the growth and mortality of seedlings up to the flowering stage, however, are needed.

A comparative study was undertaken of Amazonian fish diversity and density (abundance and biomass) in nutrient poor (blackwater) and richer (whitewater – várzea) habitats in the vicinity of Tefé, Brazil. The whitewater sampling sites, in the floodplain of the Rios Solimōes and Japurá, had high turbidity (Secchi disc 0.03–0.7 m), a conductivity of 64–110 μS cm–1 at 25°C and a pH of 6.6–6.9. The blackwater sites Lagos Amanã, Iamã and Tefé had a low turbidity (Secchi disc 2.0–2.2 m), a conductivity of 7–11 μS cm–1 at 25°C and a pH of 5.3–6.0. The fish communities of open water, floating meadow and forest margin were sampled. Both whitewater and blackwater sites held high diversity fish communities with many species in common. Whitewater habitats were more diverse yielding 108 species, compared with only 68 from blackwater. Fish density within floating meadow was estimated during high water April and May 1994, and low water October 1994 and March 1995. During the high water season fish biomasses in blackwater lakes (31.1 gm–2) were significantly greater than those of either whitewater lakes (13.4 gm–2) or whitewater river channels (3.45 g m–2). At low water, in October, whitewater channels were generally found to hold the highest fish biomass (204 g m–2) although in March a blackwater site yielded the highest fish biomass recorded (285.9 g m–2). The amount of floating meadow habitat within Whitewaters is however much greater than that in blackwaters. It is suggested that blackwaters may offer a stable habitat resulting in a high standing crop. In comparison, variation in conditions such as dissolved oxygen concentration in the whitewater may limit standing crop, but still allow periods of high productivity. Evidence was found for migration of fish from várzea lakes during periods of low oxygen availability. The high diversity and biomass of fish caught in both whitewater and blackwater lakes indicates that water acidity and conductivity are poor predictors of fish diversity and density in tropical floodplain lakes.

The diets of the two Amazonian brocket deer (the red brocket Mazama americana and the grey brocket Mazama gouazoubira) were studied in French Guiana through the examination of stomach contents. The two species are mainly frugivore^granivores, even during the annual period of fruit scarcity (56% of the annual diet in red brockets and 68% in grey brockets). Both rely heavily on fruits and seeds, but overcome the fall in fruit availability by eating significant quantities of fibres, leaves and flowers, particularly the red brocket. Seasonal variation in quantity consumed was observed only for gravid females, which suggests that reproduction may be dependent on the fruiting season. Both species took a wide variety of plants (respectively a total of 79 and 107 species, and 8.4 and 8.9 species per stomach on average). They can be considered non-selective feeders, choosing fruits above all according to their abundance, their size, and perhaps their softness. Both species are seed eaters, destroying nearly all seeds ingested. The two species are potential competitors, but their diet competition may be reduced by their large difference in body size and somewhat different ecological niches. These deer are among the most generalized frugivores of the Guianan forest, thus reducing their food competition with other frugivores.

Leaf quality (nutrient concentration) and herbivory were studied in a set of dominant tree species in regenerating, secondary tropical dry forests growing on limestone in the Yucatán Peninsula. The study's objective was to assess how variation in nutrient availability affects leaf nitrogen and phosphorus concentrations and herbivory. Our study included an area of young forest (10 y old), with phosphorus-poor soils, and an area of old forest (∼60 y old), in which soil P was comparatively less limiting. The foliage of representative species of each site was studied, including Acacia gaumeri, Leucaena leucocephala and Lysiloma latisiliquum at the young forest site, and A. gaumeri, Bursera simaruba and Pithecellobium dulce at the old forest. Four independent plots (12 × 12 m) at each forest were either left intact (controls) or fertilized with N, with P, or with N plus P for three consecutive years. Relaxation of nutrient limitations at the young forest resulted in an increase in leaf phosphorus and herbivory in all species. In contrast, N and P fertilization at the old forest site did not consistently affect leaf nutrient concentration and leaf damage. In this site the main response to fertilization was an increase in leaf nitrogen only in B. simaruba and an increase in herbivory in A. gaumeri; leaf phosphorus was unaffected by soil fertilization. Overall, we observed that, subsequent to nutrient addition, leaf phosphorus concentration and herbivory in the leguminous species increased at the young site; leaf nitrogen concentration in the non-leguminous species increased at the old site while herbivory only increased in A. gaumeri, following a pattern similar to that observed in the young site. We conclude that the regulatory mechanisms of leaf quality and damage by herbivores will vary, depending on the details of the site's nutrient limitations and the identity of species.

We determined seasonal variation in soil matric potentials (ψsoil) along a topographical gradient and with soil depth in a Bolivian tropical dry (1160 mm y−1 rain) and moist forest (1580 mm y−1). In each forest we analysed the effect of drought on predawn leaf water potentials (ψpd) and drought response (midday leaf water potential at a standardized ψpd of −0.98 MPa; ψmd) of saplings of three tree species, varying in shade-tolerance and leaf phenology. ψsoil changed during the dry season and most extreme in the dry forest. Crests were drier than slopes and valleys. Dry-forest top soil was drier than deep soil in the dry season, the inverse was found in the wet season. In the moist forest the drought-deciduous species, Sweetia fruticosa, occupied dry sites. In the dry forest the short-lived pioneer, Solanum riparium, occupied wet sites and the shade-tolerant species, Acosmium cardenasii drier sites. Moist-forest species had similar drought response. The dry-forest pioneer showed a larger drought response than the other two species. Heterogeneity in soil water availability and interspecific differences in moisture requirements and drought response suggest great potential for niche differentiation. Species may coexist at different topographical locations, by extracting water from different soil layers and/or by doing so at different moments in time.

Carbon dioxide emission through soil respiration is an important component of the carbon balance in forest ecosystems. However, little information is available on the rates of soil respiration in mangrove forests. We studied the rate of soil respiration in a secondary mangrove forest in eastern Thailand on an estuary of the Trat River during both the wet and dry seasons. A study site of 40 × 110 m was established and a series of vegetation zones identified: Sonneratia, Avicennia, Rhizophora and Xylocarpus, in order of increasing elevation inland. Soil respiration was measured during low tide, using an infrared gas analyser connected to a respiratory chamber, by excluding the respiration of above-ground roots from the chamber. At least 19 measurements were performed in each zone for each season. The rate of soil respiration significantly increased with increasing soil temperature. The soil temperature which was usually lower than that of sea water showed a trend that decreased with distance from the river in both wet and dry seasons. The relative land elevation causes different periods of inundation among the vegetation zones. The period was longest in the Sonneratia zone located on the river fringe, and became shorter moving inland. Thus, the elevation and relevant period of inundation are considered to be causal factors warming the soil. Consequently, the difference in soil temperature caused significantly different rates of soil respiration among the vegetation zones in the mangrove forest. Overall, the average rate of soil respiration ranged from 0.456 to 0.876 μmol CO2 m−2 s−1, supporting the view that mangrove forests have lower rates of soil respiration than do upland forests.

Although tropical forest birds are known to prey upon small lizards and frogs, no study has documented the attributes of vertebrate-eating birds or whether birds prey opportunistically on the different elements of the herpetofauna within tropical communities. This study is based on a 14-mo investigation on avian diet, supplemented with a 3-y census of frogs and a 1-y census of lizards in a humid forest of central Panama. From 91 bird species, 1086 regurgitates were collected, in which were found 75 lizards and 53 frogs. Over 50% of the common, primarily insectivorous bird species preyed upon lizards or frogs, with a mean frequency of 0.26 prey/sample. These birds (22 species, nine families) foraged on various substrates from different strata of the forest, fed on invertebrates averaging from 3.3 to 17.2 mm in length, weighed from 11 to 195 g, and had bill lengths that varied from 12.2 to 49.8 mm. Based on a logistic regression analysis, intensity of foraging at army-ant swarms was the variable that best explained the likelihood that a bird species preyed upon lizards, leading to a classification that was 91% correct. In contrast, bill length and body length classified correctly 88% of the frog-eating birds, which showed a fairly constant 1:7 bill length/body length ratio (as opposed to a mean but highly variable 1:10 ratio in other species). A multiple regression analysis showed that seasonal variation in intensity of lizard predation was positively related to arthropod abundance except during the breeding season when lizard intake decreased, presumably because nesting birds did not follow ant swarms. Intensity of frog predation correlated with frog abundance over time, the latter being inversely related to arthropod availability. Ninety-seven per cent of all lizards and frogs identified in the diet samples (n = 105) were from two genera, Anolis and Eleutherodactylus, respectively. Prey size distribution in the regurgitates suggested an optimal prey size of 33.5 mm snout-vent length (SVL) for lizards and 14.5 mm SVL for frogs. Birds preyed opportunistically on the different Anolis species, but almost exclusively upon juvenile individuals. Abundances of the different Eleutherodactylus species correlated with their predation rates, but these frogs represented only 10% of all the frogs observed during the censuses. The two most common local anurans, Colostethus flotator and Bufo typhonius, were not taken by any bird species.

Stream water chemistry responds substantially to watershed disturbances, but hurricane effects have not been extensively investigated in tropical regions. This study presents a long-term (2.5–11 y) weekly record of stream water chemistry on eight forested watersheds (catchment basins) in the Luquillo Mountains of Puerto Rico. This includes a period before and at least 2 y after the disturbance caused by the 1989 Hurricane Hugo. Nitrate, potassium and ammonium concentrations increased after the hurricane and remained elevated for up to 2 y. Sulphate, chloride, sodium, magnesium and calcium showed smaller relative significant changes. Average stream water exports of potassium, nitrate and ammonium increased by 13.1, 3.6 and 0.54 kg ha−1 y−1 in the first post-hurricane year across all watersheds. These represent increases of 119, 182 and 102% respectively, compared to the other years of record. The increased stream outputs of potassium and nitrogen in the first 2 y post-hurricane are equivalent to 3% (potassium) and 1% (nitrogen) of the hurricane-derived plant litter. Effects of hurricanes on tropical stream water potassium and nitrogen can be greater than those caused by canopy gaps or limited forest cutting, but less than those following large-scale deforestation or fire.

This study examined whether postdispersal fruit and seed removal by terrestrial mammals of common plant species was affected by the type of item, item density (low, medium, high), and habitat (gap, mid-succession, mature). Fruits of Brosimum alicastrum and Ficus yoponensi (Moraceae), Astrocaryum mexicanum (Palmae), and Nectandra ambigens (Lauraceae), and seeds of Omphalea oleifera (Euphorbiaceae) and Cymbopetalum baillonii (Annonaceae) were tested at the Los Tuxtlas rainforest in Mexico. Item removal from 108 experimental patches (N = 2340 fruits or seeds for each plant species tested) after 5 d was lower for F. yoponensis (6.6%) than for N. ambigens (68.8%), B. alicastrum (67.8%), C. baillonii (64.0%) and A. mexicanum (60.0%). No seeds of O. oleifera were removed. A higher fruit or seed removal was observed from high density than low density food patches in A. mexicanum, C. baillonii and N. ambigens, but not in B. alicastrum and F. yoponensis. A higher fruit or seed removal was observed from food patches in mature forest than in gaps in all plant species tested. Similar removal values between open (open to all terrestrial mammals) and caged (open to small rodents) fruit and seed patches, abundant rodent live-trapping, and a scarcity of large terrestrial mammals, indicated that forest-dwelling small rodents were the main postdispersal removal agents. Differences in plant species seedling recruitment resulting from small rodent food choices can partially determine long-term forest floristic composition at the Los Tuxtlas rainforest.

The spatial patterns presented by the marsupial Micoureus demerarae were studied through capture–mark–recapture in two small Atlantic Forest fragments (areas 7.1 and 8.8 ha). The study took place from March 1995 to August 1997. Considering all captures of each individual, males did not have larger home ranges within the fragments than did females. A negative correlation was found between home range sizes and population densities. For males, home ranges overlapped often, and were larger during the breeding season. For females, home ranges did not overlap except for a short period when there were many individuals present, and home range sizes were not significantly larger in the breeding season. Five movements between the two forest fragments were detected, across 300 m of open vegetation. All the movements were performed by males during the reproductive season. M. demerarae in the small fragments therefore displays a metapopulation structure, although possibly an atypical one where only males disperse.

A population of the tropical lizard Tropidurus hispidus, isolated on a granitic rock outcrop in tropical forest of northern Brazil, was studied during the 1993 wet season. Four types of observational studies revealed that lizards are active throughout most of the day. During 10-minute intervals, individual lizards moved five times for an average of 240 cm and tongue-flicked once. Habitat temperatures vary considerably during the day, with rock and air temperatures in sun exceeding body temperatures of lizards during much of the activity period. During most of the day, lizards thermoregulate by moving among shady, filtered sun, and sunny microhabitats maintaining body temperatures near 35°C. Temperatures of lizards active during cloudy periods were significantly lower than temperatures of lizards during sunny periods, indicating that clouds decrease the ability of lizards to effectively thermoregulate. Most feeding occurs in the afternoon at edges of rock outcrops with ants, insect larvae, termites and beetles dominating the diet. Comparisons with a near-by savanna population revealed differences in body size (males only), activity period (longer on rocks), body temperatures (higher on rocks), number of prey categories consumed (lower on rocks), mean size of prey (larger on rocks), number of prey eaten (fewer on rocks) and microhabitat use (more restricted on rocks).

The amount of leaf litter fall produced by different tree species in tropical forests varies in space and time. Falling litter may cover seeds and thereby enhance their survival by making their detection by seed predators more difficult. Tests were made to determine whether Astrocaryum murumuru and Dipteryx micrantha seeds survive better in microsites covered by leaf litter. Seed numbers and litter cover on the forest floor were experimentally manipulated. How natural variation in leaf litter cover and thickness affects seed and seedling survival of these two plant species was also examined. Seed survivorship was significantly higher for both plant species in microsites with leaf litter than in those with bare soil. Results from an experiment in which the litter was not disturbed showed that Astrocaryum seed survival was positively correlated with litter thickness (defined as the number of overlying dead leaves). Astrocaryum seedling survival was also significantly affected by leaf litter; more seedlings survived in shallow litter. Leaf litter had no effect on Dipteryx seedling survival. The results of the study suggest that early recruitment of both Astrocaryum and Dipteryx is influenced by the spatial distribution and amount of forest leaf litter.

Habitat fragmentation and deforestation are thought to disrupt host–parasite interactions and increase the risk of epizootic outbreaks in wild vertebrates. A total of 220 individuals from three species of African rain-forest bird (Andropadus latirostris, Andropadus virens, Cyanomitra obscura), captured in two pristine and two agroforests in Cameroon, were screened for the presence of avian haemosporidian parasites (species of Plasmodium and Haemoproteus) to test whether habitat differences were associated with differences in the prevalence of infectious diseases in natural populations. Thirteen mitochondrial lineages, including 11 Plasmodium and two Haemoproteus lineages were identified. Whereas levels of Haemoproteus spp. infections were too low to permit analysis, the prevalence of infections with Plasmodium spp. reached significantly greater levels in undisturbed mature forests. Importantly however, the significant association between forest type and parasite prevalence was independent of host density effects, suggesting that the association did not reflect changes in host species composition and abundance between forest types. Our results illustrate how characterizing land-cover differences, and hence changes, may be a prerequisite to understanding and predicting patterns of parasite infections in natural populations of rain-forest birds.