Manure and chemical fertilizers have different effects on soil properties, the nitrogen cycle, and crop yield. This study aimed to investigate the effects of different fertilizer applications under the same N input on soil physicochemical properties and soil bacterial communities and to explain the contributions of soil properties to grain yield. Manure substitution of chemical fertilizer was conducted in leaching monitoring systems. The study began in 2009 and sampling was carried out in 2014 and 2016. Three fertilizer treatments with the same total N, P, and K application rates and one control treatment were designed as follows: (1) CK, without nitrogen fertilizer; (2) 100%U, whole nitrogen coming from urea; (3) 100%M, whole nitrogen coming from composted cattle manure; and (4) 50%U + 50%M, half nitrogen from composted cattle manure and half nitrogen from urea. Soil organic carbon (SOC) content was positively correlated with total N (TN), NO3−–N, and NH4+–N contents, the mean weight diameter of soil aggregates, and the Shannon diversity index of bacteria, whereas SOC content was not significantly correlated with grain yield. NO3−–N content was positively correlated with grain yield. Substituting half the amount of chemical fertilizer with manure as a nitrogen source improved soil stability, increased bacterial diversity, and enhanced nitrogen supply, while reducing nitrogen loss from ammonia volatilization and nitrogen leaching. Substituting half the amount of chemical fertilizer with manure as a nitrogen source was a more sustainable way to increase grain yield through a sustainable nitrate supply and to reduce N loss.

A new practical and precise method for determining soil aggregate stability is described. Four air-dry aggregate fractions (<0.25, 0.25–0.5, 0.5–1.0 and 1.0–2.0 mm) were added to thoroughly stirred water in a Mastersizer 2000 laser diffractometer. The suspension obtained was passed directly through the measuring system. The dynamics of median (equivalent diameter d50) particle-size distribution decrease (interpolated with a logarithmic function) was assumed to be the measure of soil aggregate stability. In order to show the applicability of the new method, the results obtained (for selected and diverse soils) were compared with those from the wet sieving standard method. The main conclusion is that the proposed method is convenient and can be successfully used for the estimation of soil aggregate stability. Moreover, it has wider application because standard sieving methods are restricted to aggregates >0.25 mm whereas, with the use of the laser diffraction method, smaller aggregates can be measured. The energy delivered to the aggregates in the process of aggregate disintegration is more reproducible in the method described here. The method also provides an opportunity to verify that the soil aggregates are completely destroyed (lack of the changes of the median value shows the end of soil aggregate disintegration).

Ecologically based farming conserves and improves the soil resource and protects environmental quality by using organic or natural resources without the application of synthetic chemicals. Soil quality assessment indicates the ability of management systems to optimize soil productivity and to maintain its structural and biological integrity. Our objective was to evaluate the effect of ecologically based management on biochemical characteristics of soil [soil quality indicators (SQI)] as an assessment of soil quality. The study was conducted on an ecologically based farming enterprise established on gently sloping soils of Sharpsburg silt loam (fine montmorillonitic, mesic Typic Argiudolls) in Clay County, Missouri, which was previously under conventional corn and soybean production. The transition to organic farming began in 1995, which included a primary management strategy to restore soil organic matter consisting of the establishment of native prairie plants and the application of composted vegetative residues and litter from horse and laying hen operations. Soils were collected at 0–10cm depths from sites under organic production (orchard and vegetable), managed prairie/pasture and from adjacent unmanaged fields during 2003–2008 for soil quality assessment. Soil organic carbon (SOC) and water-stable soil aggregates were considerably increased by up to 60 and 72%, respectively, in organic production sites compared with tilled cropland by the fifth year of assessment. Organically managed systems and restored prairie sites significantly increased (P<0.05) soil enzyme activities compared with unmanaged grass and tilled cropland. For example, dehydrogenase and glucosaminidase activities increased by 60 and 73%, respectively, under organic vegetables compared with tilled cropland. Soil enzyme activities were significantly correlated with SOC content (r values up to 0.90, P<0.001). The results of the soil quality assessment suggest that ecologically based management successfully restored biological activity of silt loam soils previously under intensive conventional agriculture. The system practiced at the study sites illustrates how resources internal to the farm (i.e., composts) can be used to manage soil productivity.

A simple method of estimating changes in biologically active soil carbon (C) could help evaluate soil quality impacts of alternative management practices. Most reports of permanganate for active C determination use highly concentrated solutions (0.333 M) that are difficult to work with and tend to react with a large fraction of soil C that is not well distinguished from total organic C. We report on a highly simplified method in which dilute, slightly alkaline KMnO4 reacts with the most readily oxidizable (active) forms of soil C, converting Mn(VII) to Mn(II), and proportionally lowering absorbance of 550 nm light. The amount of soil C that reacted increased with concentration of KMnO4 used (0.01 to 0.1 M), degree of soil drying (moist fresh soil to air-dried for 24 hour) and time of shaking (1–15 minutes). Shaking of air-diy soil in a 0.02 M KMnO4 solution for 2 minutes produced consistent and management-sensitive results, both in the laboratory and with a field kit that used a hand-held colorimeter. Addition of 0.1 M. CaCl2 to the permanganate reagent enhanced settling of the soil after shaking, eliminating the need for centrifugaron in the field kit. Results from the laboratory and field-kit protocols were nearly identical (R2 = 0.98), as were those from an inter-laboratory sample exchange (R2 = 0.91). The active soil C measured by the new procedure was more sensitive to management effects than total organic C, and more closely related to biologically mediated soil properties, such as respiration, microbial biomass and aggregation, than several other measures of soil organic C.

Agricultural soil quality (SQ) research has focused on the influence of individual soil properties, particularly those related to soil organic matter (SOM), on soil processes such as water movement and retention, and nutrient cycling. However, few studies have assessed the influence of these SOM-related properties on crop productivity, particularly under different management systems. Furthermore, agricultural SQ research in tropical regions is limited. The objectives of this study were, for a tropical site, to determine (1) the relationship between selected soil characteristics and resulting soil functional properties such as aggregate stability and porosity, and (2) the relationship between SQ indicators and productivity of corn under three different tillage systems. Twelve plots were randomly demarcated in three adjacent fields under different tillage systems. Profiles were described by augering and the surface soil (0–7.5 cm) was sampled just prior to crop harvest and analyzed for texture, standard soil tests (pH, available P, K, Mg and Ca) and SQ parameters including total N, total and active fraction C, porosity and aggregate stability. Corn dry grain m−2, above-ground crop dry matter m−2, and dry grain per plant was measured in each plot. Soil C parameters were highly predictive of macroaggregate stability and soil porosity across different tillage systems. Macroaggregate stability and soil C (particularly active C oxidizable by 0.025m KMnO4) were highly correlated with crop productivity across tillage systems. These findings suggest that soil C in the surface layer, especially the active C fraction, markedly affected the productivity of this tropical soil through its influence on soil structure.