Similarities and differences among eight upland rain forest sites in Peruvian Amazonia were measured separately by using Melastomataceae, pteridophyte and tree species compositions and edaphic characteristics of the sites. All three plant groups showed a similar pattern among the sites, and this pattern could be explained by edaphic differences but not by geographical distances among the sites. The explicability of site-specific edaphic characteristics on the basis of geological history is discussed. The results suggest that both pteridophytes and Melastomataceae can be used as indicators of floristically different rain forest types that are edaphically defined. Distribution patterns of these plant groups can be studied much more rapidly than the patterns of trees and therefore both Melastomataceae and pteridophytes may be used in large scale phytogeographical studies that are urgently needed in the face of rapidly advancing deforestation.