The fine-scale genetic variation and population structure of lichen-forming fungi is little known and sampling strategies are rarely recommended or discussed. I tested if the sample sizes of molecular data sets used in recent population studies of Xanthoria parietina revealed all haplotypes potentially present and, accordingly, quantified how many haplotypes were potentially missing in the samples. Data sets were concatenated from two geographical regions in Scandinavia and investigated if the sampling reached saturation at two levels: 1) individual-based using rarefaction curves and 2) population-based using species accumulation curves. At both levels, the matrices of two molecular markers (IGS and ITS) were analysed separately. The molecular markers show similar and parallel patterns in all analyses. Rarefaction analyses did not reveal different patterns for populations in different habitats, i.e., bark and rock. Species accumulation curves estimated with the Chao 1 richness estimator indicated that 23% of the IGS and 8% of the ITS haplotypes were not detected. Corresponding figures from an abundance-based coverage estimator (ACE) were 37% and 18%. Pilot studies are recommended to determine appropriate sample sizes for genetic-based population studies of lichen-forming fungi.

The monogenean Gyrodactylus salaris Malmberg, 1957 is an economically important parasite on Atlantic salmon whereas the morphologically very similar G. thymalli Žitňan, 1960 on grayling is considered harmless. Even molecular markers cannot unambiguously discriminate both species. The nuclear internal transcribed spacer (ITS) sequences are identical in both species, and although mitochondrial cytochrome oxidase I (COI) sequences show substantial variation, no support for monophyly of either species is found. Analysis of nucleotide sequences of the intergenic spacer (IGS) have, however, been interpreted as support for 2 species. Here, IGS and COI sequences from 81 G. salaris and G. thymalli specimens of 39 populations across the species' distribution range were determined. Mitochondrial diversity was not reflected in the nuclear marker. Since various 23 bp IGS repeat types usually differ by just one nucleotide and sequences primarily differ in the number and order of repeat types, alignments may be biased and arbitrary, impeding meaningful phylogenetic analyses. The hypothesis that parasites on rainbow trout represent hybrids of both species is rejected. The presence or absence of particular repeat types is not considered informative. We interpret the IGS data as support for G. salaris and G. thymalli being a single species.

The sequences for the entire intergenic spacer (IGS) and 3′ end region of the large subunit (28S) ribosomal RNA gene are presented for Schistosoma intercalatum, S. haematobium and S. mansoni. The IGS was found to have at least 2 size formats for S. intercalatum and S. haematobium and the region for all 3 species contains numerous repeats and evidence of recombination. An A+T rich sequence found in S. intercalatum and S. haematobium is described and its possible function and origins are discussed. The amplification of this region by means of the polymerase chain reaction can be used to discriminate clearly between the 3 species involved in this study. The putative end of the 28S gene is identified.

Basidiocarps of Pisolithus associated with indigenous (Afzelia quanzensis Welw.) and introduced (Pinus caribaea Mor. and Eucalyptus camaldulensis Dehnh.) hosts in the lowland forests of the Coast Province of Kenya are morphologically distinct. Genetic variability among 52 Pisolithus basidiocarps, collected beneath the various host plants, was examined based on sequence polymorphism within the internal transcribed spacer (ITS) and intergenic spacer (IGS1) of ribosomal DNA genes. Variability in ITS and IGS1 sequences indicated that the three host-associated morphotypes were genetically different. Consensus trees generated by bootstrap analysis of sequence data of Pisolithus isolates from Australia and Kenya are polyphyletic and strongly suggest that the three different morphotypes/genotypes present in Kenya represent separate biological species. In addition, our data indicate that little genetic exchange occurs in silva between these species.