A cross-sectional survey was carried out in primary schools to determine prevalence, intensity and spatial co-distribution of Schistosomiasis and soil transmitted helminths (STH) infections in Ogun State, Nigeria. A total of 2148 pupils from 42 schools were examined for Schistosoma and STH infections from urine and fresh fecal samples respectively. Ethyl ether concentration method prepared in sodium acetate – acetic acid – formalin ether was used to concentrate parasites’ ova before microscopic examination. The overall prevalence of schistosomiasis and STH infections were 4.0% (95% CI = 3.21–4.92) and 34.64% (95% CI = 32.62–36.69) respectively. Schistosoma haematobium and Ascaris lumbricoides were the most prevalent across the study area among the Schistosoma and STH species respectively. Overall, intensity of infection was higher in males than in females for all Schistosoma and STH infections, but with no significant difference (P > 0.05), except for Trichuris trichiura (χ2 = 6.490, P < 0.05). Infection intensity was significantly inversely correlated (χ2 = 12.953, P < 0.05) with an increase in age group. Co-distribution of Schistosoma and STH infections occurred in 15 (35.7%) out of 42 schools, and only 30 children (1.4%) had co-infection of Schistosoma and STH. This study provides information on the prevalence and spatial risk of schistosomiasis and STH in Ogun State. This will serve as decision-support tool for Ogun State programme managers to help facilitate integration of schistosomiasis and STH control.