It has been unclear whether Holocene lake evolution in the Badain Jaran Desert of northwestern China, an area in which lakes are mainly recharged by groundwater, responded to climate change. In this study, we analyzed the Mg/Ca ratio and phytolith assemblages from 10 Holocene calcareous root tube samples from the desert to reconstruct changes in effective moisture and mean annual precipitation (MAP) at the millennial scale during the Holocene and to explore the factors affecting lake evolution. Our results revealed that the effective moisture at 7000–5000 cal yr BP was higher than that of 5000–2000 cal yr BP. Similarly, the MAP was higher at 7000–5000 cal yr BP (175 ± 37 to 205 ± 37 mm) than at 5000–2000 cal yr BP (145 ± 37 to 165 ± 39 mm). The expansion of the lakes during the Early Holocene would have resulted from the input of groundwater from the meltwater in the recharge area. High lake levels in the Middle Holocene corresponded to increased monsoonal precipitation and groundwater recharge. The gradual decline of lake levels in the Late Holocene indicated a relatively arid climate with decreased monsoonal precipitation and groundwater recharge.

In the hinterland of the desert, valuable archives of paleoenvironmental evolution are scarce. Calcareous root tubes (CRTs) have a strong potential for reconstructing paleoenvironmental conditions. It is still unclear, however, whether chemical elements in the CRTs can provide insights into paleoenvironmental conditions. In this study, the major- and trace-element composition of 32 CRT samples from the Alashan Desert were analyzed by X-ray fluorescence spectrometry. Results showed that the elemental composition and content change were controlled by the parent material and climatic conditions at the time of CRT formation. Ca, Mg, and Sr were significantly affected by climate, whereas the enrichment of P is likely related to the growth of plants. Higher (lower) Mg/Ca and Sr/Ca ratios corresponded to higher (lower) effective moisture and a higher (lower) Mg/Sr ratio indicated a higher (lower) temperature during the middle Holocene (8–5 cal ka BP). The reconstruction results for effective moisture were consistent with those in the Asian monsoon margin of northwestern China, which were caused by higher monsoon precipitation and lower evaporation. Therefore, chemical elements in the CRTs can reflect changes in paleo-effective moisture and paleotemperature at a millennial resolution in this area.

In the hinterland of deserts, it is difficult to reconstruct paleovegetation using fossil pollen because of the low pollen concentration. Therefore, an efficient method is needed to reconstruct the paleovegetation of desert regions. In this study, 34 Holocene calcareous root tube (CRT) samples were collected from the Alashan Desert in northwest China, and lipid molecular proxies from CRTs were selected to address this deficiency. The results show that n-alkanes mainly maximized at C27, C29, and C16, and that the carbon preference index is close to 1. Thus, the sources of n-alkanes from CRTs were the roots of higher plants and microorganisms, and thus changes in n-alkanes from CRTs could reveal variations in vegetation cover. The n-alkane Cmax of long-chain n-alkanes (C>25) in CRTs, maximizing at C27, indicated that vegetation in the Alashan Desert was characterized by shrub vegetation during the Holocene. Changes in the ratio of (C27+C29)/(C31+C33) indicated that the biomass of shrub vegetation increased during the period 7–2 cal ka BP. Moreover, the relative concentration of short-chain to long-chain n-alkanes decreased from 7 to 2 cal ka BP, suggesting that the effective moisture decreased during that period.