The mammalian respiratory system or lung is a tree-like branching structure, and the main site of gas exchange with the external environment. Structurally, the lung is broadly classified into the proximal (or conducting) airways and the distal alveolar region, where the gas exchange occurs. In parallel with the respiratory tree, the pulmonary vasculature starts with large pulmonary arteries that subdivide rapidly ending in capillaries adjacent to alveolar structures to enable gas exchange. The NOTCH signalling pathway plays an important role in lung development, differentiation and regeneration post-injury. Signalling via the NOTCH pathway is mediated through activation of four NOTCH receptors (NOTCH1-4), with each receptor capable of regulating unique biological processes. Dysregulation of the NOTCH pathway has been associated with development and pathophysiology of multiple adult acute and chronic lung diseases. This includes accumulating evidence that alteration of NOTCH3 signalling plays an important role in the development and pathogenesis of chronic obstructive pulmonary disease, lung cancer, asthma, idiopathic pulmonary fibrosis and pulmonary arterial hypertension. Herein, we provide a comprehensive summary of the role of NOTCH3 signalling in regulating repair/regeneration of the adult lung, its association with development of lung disease and potential therapeutic strategies to target its signalling activity.

A systematic study, using ion trap time-of-flight mass spectrometry, is presented for the photo-dissociation processes of Bisanthenquinone (Bq) cations, C28H12O2+, a ketone substituted Polycyclic Aromatic Hydrocarbon (PAH). The Bq cation fragments through sequential loss of the two neutral carbonyl (CO) units upon laser (626nm) irradiation, resulting in a PAH-like derivative C26H12+. Upon further irradiation, C26H12+ exhibits both stepwise dehydrogenation and C2/C2H2 loss fragmentation channels. Quantum chemistry calculations reveal a detailed picture for the first CO-loss, which involves a transition state with a barrier of ∼ 3.4 eV, which is lower than the energy required for the lowest H-loss pathway (∼ 5.0 eV). The barrier for the second CO-loss is higher (∼ 4.9 eV). The subsequent loss of this unit changes the Bq geometry from a planar to a bent one. It is concluded that the photodissociation mechanism of the substituted PAH cations studied here is site selective in the substituted subunit. This work also shows that an acetone substituted PAH cation is not photo-stable upon irradiation.

In this work, we utilize a method based on Wang-Landau Monte Carlo sampling for studying the temperature effects of astrophysically relavant molecules. Anharmonic effects, e.g., resonances, overtones, and combination bands, are fully incoportated in this method. The calculated infrared (IR) spectra are consistent with the experimental data measured by National Institute of Standards and Technology (NIST).

Astronomical observations of Centaurs and trans-Neptunian objects (TNOs) yield two characteristic features – near-infrared (NIR) reflectance and low geometric albedo. The first feature apparently originates due to complex organic material on their surfaces, but the origin of the material contributing to low albedo is not well understood. Titan tholins synthesized to simulate aerosols in the atmosphere of Saturn's moon Titan have also been used for simulating the NIR reflectances of several Centaurs and TNOs. Here, we report novel detections of large polycyclic aromatic hydrocarbons, nanoscopic soot aggregates and cauliflower-like graphite within Titan tholins. We put forth a proof of concept stating the surfaces of Centaurs and TNOs may perhaps comprise of highly ‘carbonized’ complex organic material, analogous to the tholins we investigated. Such material would apparently be capable of contributing to the NIR reflectances and to the low geometric albedos simultaneously.

Polycyclic aromatic hydrocarbons (PAHs) are considered as plausible carriers for the extended red emission (ERE), a photoluminescent process associated with a wide variety of interstellar environments, as well as for broad emission band features seen in cometary spectra. We report the absorption spectra of phenanthrene, anthracene, fluoranthene, pentacene, pyrene, chrysene and triphenylene isolated at 10 K in solid argon matrices together with laser induced fluorescence (LIF) spectra at 355 nm of matrix-isolated anthracene and fluoranthene. LIF spectra are compared with the UV/blue fluorescence spectra of the Red Rectangle Nebula (RR). The LIF spectra measured in solid Ar matrices have been shifted to the predicted position of the PAH band emission in the gas phase for comparison with the astronomical observations (Fig. 1).

We have studied the star-forming and AGN activity of massive galaxies in the redshift range z = 0.4−2, which are detected in a deep survey field using the AKARI and Subaru telescopes toward the North Ecliptic Pole (NEP). The multi-wavelength survey allows us to select Mid-InfraRed (MIR) bright populations as Luminous InfraRed Galaxies (LIRGs) with L(IR) ≃ 1010–11 L⊙, which can be also sub-classified into Balmer Break Galaxies (BBGs) and Infra-Red (IR) Bump Galaxies (IRBGs). AKARI/IRC multiband photometry can distinguish their star-forming/AGN activity for LIRGs with/without the Polycyclic-Aromatic Hydrocarbon (PAH) emission bands at 6.2, 7.7 and 11.3 μm, and estimate the Star Formation Rate (SFR) from their total emitting InfraRed (IR) luminosities for star-formings and the emissions from dusty torus for AGNs. The results are summarised as below: 1) The rest-frame 7.7 μm luminosity is still a good tracer of the total IR (tIR) luminosity, as the PAH emission dominates for star-forming galaxies even up to z ≃ 2, 2) Rest-frame 5μm Luminosities may trace emissions from dusty torus of AGN in the LIRGs, 3) SFR of Starburst-AGN LIRGs (s/a-LIRGs) tends to quench at z < 0.8 more rapidly than that of Starburst dominated LIRGs (sb-LIRGs), 4) Intrinsic Stellar populations in the s/a-LIRGs show redder colours than those in the sb-LIRGs. These results suggest that Super Massive Black Holes (SMBH) could already have grown to ≃ 3 × 108M⊙ in the agn-LIRGs, with ≃ 1011L⊙ at z > 1.2, and the growth of SMBH tends to follow the star-forming activities around z = 1–2.

Fish tests must be developed for both regulatory and conservation reasons, as such testing forms an indispensable component of integrated toxicity testing strategy for the marine environment. To standardise a fish embryo test, the acute toxicity of metals and polycyclic aromatic hydrocarbons (PAHs) to early life stages (ELS) of turbot (Psetta maxima) was studied. Embryos were exposed to dilutions of cooper, cadmium, mercury, fluoranthene, phenanthrene, pyrene and naphthalene in darkness and under visible light. Hatching success, yolk sac alterations, pericardial edema, skeletal deformities and mortality were observed. The effective concentrations (EC50, EC10,) no observed effect concentration (NOEC) and the lowest observed effect concentration (LOEC) were determined at the end of the bioassays. Exposure to metals and PAHs in ecologically relevant concentrations, either in darkness or under artificial light, caused significant lethal and sublethal effects in turbot, such as alterations in yolk sac, pericardial edema and skeletal abnormalities. According to the 96 h EC50, the ranking of acute toxicity for metals was respectively: 47.4 (46.8–59.2) μg L−1 Cu; 51.5 (20.9–91.7) μg L−1 Cd, and 83.2 (62.3–125) μg L−1 Hg. For PAHs, acute toxicities were 5.2 (4.3–6) μg L−1 pyrene, 12.3 (6.4–12.7) μg L−1 fluoranthene, 52.2 (30.4–82.7) μg L−1 phenanthrene, and 142 (55–228) μg L−1 naphthalene. Pyrene was consistently the most toxic PAH. In addition, light exposures were performed and photo-enhanced toxicity was found only for fluoranthene and pyrene. Turbot embryos were found to be more tolerant to metals and PAHs than were hatched larvae. These results suggest that, considering the short duration of the ELS turbot test and its high sensitivity, it is suitable for use as a standard test for marine fish.

Immunological alterations may be used as ecotoxicological biomarkers to detect and monitor biological effects of chemical contaminants in polluted environments. This study reports on a survey of Pacific oysters from the Atlantic coast of Britanny (France) after the “Erika” oil spill. Reared stocks were sampled twice a year from November 2001 to March 2003 at three impacted sites and at an additional site outside the spill area. A multiparametric diagnosis of the immune system was performed on individual hemolymph samples to identify structural, immunopathological alterations and functional impairment of immunocompetent cells. One year after the spill, severe immunological alterations were observed in a site heavily impacted by oil. Since the oysters there had higher contents of PAH compared to the other sites, it was suggested that chronic contamination, possibly generated by oil trapped in the sediments, had induced immunotoxicity. Moreover, moderate variations in some hemolymph parameters observed at the non-impacted area strongly suggested that natural environmental factors may have generated physiological stress. An immunotoxicological index applied here in order to integrate all measurements of defense-related functions appeared to be an efficient tool to identify samples suffering immunological stress.

A 3-year survey was made of several biological markers in mussels (Mytilus edulis) exposed in situ to the oil that came ashore after the wreck of the “Erika” tanker on the Brittany (France) coast in December 1999. The mussel response was assessed using a set of 7 biomarkers, most of them related to the metabolism of organic contaminants. After a series of validation tests, data was evaluated for only 5 biomarkers: acetylcholinesterase (AChE), glutathione S-transferase (GST), catalase (CAT), malondialdehyde (MDA) and deoxyribonucleic acid (DNA) adducts. No significant reductions in GST or CAT levels were observed, levels of DNA adducts and MDA were high during the 6 months immediately following the accident and levels of AChE were significantly lower during the first year of the survey suggesting a general stress. A simple multivariate graphic method, the integrated biomarker response index, was used to combine 4 of the 5 validated biomarkers and quantify the degree of impact on mussels at different sites. The results show that mussel populations were affected by the oil spill only during the first year after the event.

Since March 2001, samples of the remaining oil from the wreck of the “Erika” have been collected along the Atlantic coastline in order to assess the natural degradation rate. Four years after the sinking of the tanker, chemical analyses of the oil revealed the influence of environmental parameters on the degradation kinetics. Among the diverse parameters controlling the fate of oil in the environment, biodegradation by microorganisms is known to play an important role. To investigate the role of microorganisms on “Erika” oil degradation, microbial mats from the Guérande salt marches were maintained in slurries containing the pollutant. From these slurries experiments, a low biodegradation rate of the “Erika” oil was detected indicating the degradation capacities of microbial mats. Biodiversity studies were conducted to further understand the biodegradation processes. Microbial mats from the Guérande salterns were maintained in microcosms to evaluate the impact of “Erika” oil on bacterial communities. Molecular analysis based on 16S rRNA and pufM encoding genes allowed fingerprinting of the bacterial and purple anoxygenic bacterial (PAB) communities respectively. These studies revealed bacterial diversity and communities changes showing the adaptation of microorganisms to the “Erika”.

Aliphatic (AHs) and polycyclic aromatic hydrocarbons (PAHs) concentrations were measured in marine surface sediments around the Brazilian station in Admiralty Bay, during the summers of 1997/98 and 1999/2000 using GC-FID and GC-MS. Total aliphatic hydrocarbons ranged from 0.15 to 13.28 μg·g−1 (dry weight) while n-alkanes varied between 0.10 and 9.63 μg·g−1. The highest concentrations were obtained at the sewage outfall, with decreasing levels away from the outfall. The distribution of n-alkanes showed significant quantities of long chain n-alkanes (n-C22 to n-C34) at sites near the Brazilian station that may be attributed to the station activities. A short chain n-alkanes sequence (n-C12 to n-C21) associated with diesel fuel arctic (DFA) was present in all the samples. Total PAHs varied from 9.45 to 270.5 ng·g−1. The higher PAHs level and the presence of an unresolved complex mixture only in sediment from the sewage outfall is an indication of oil contamination at this location. A slight increase in PAHs near the Brazilian station since 1993 may be attributed to an increase in the number of staff over recent years. In general, the concentration of AHs and PAHs was similar to that found in other Antarctic areas.

In this work we started from the basic idea that the pure polycyclic aromatic hydrocarbons (PAHs) cannot be the real carriers of the unidentified infrared bands (UIBs), the emission spectra coming from a large variety of astronomical objects. Instead we propose a new model taken from petroleum chemistry which, we can show, is able to match both the UIBs and even the protoplanetary nebulae (PPNe) spectra. PAHs such as phenanthrene, benzoperylene, coronene and pentacene, are too pure and too specific to really exist in the interstellar medium. Instead our model proposes that the carrier of UIBs and PPNe are complex molecular mixtures like those obtained as fractions during the petroleum refining processes. These molecular mixtures are so complex that practically the investigators did not try to identify each individual component but characterized the mixture with an average molecular structure that takes into account both the average molecular weight and the average content of aromatic, naphtenic (cycloaliphatic) and aliphatic (paraffinic) fraction. We show by infrared spectroscopy that petroleum fractions obtained at certain steps of the refining process are able to match the UIBs and the PPNe infrared bands with the advantage of not being so specific as PAHs are. Namely we have used as samples a distillate aromatic extract (DAE) a treated residual aromatic extract (T-RAE) and finally a naphtenic oil. Among the three samples examined, the DAE sample was the best in matching the UIBs and PPNe spectra.