Pigeonpea is an important grain legume. It contributes to the improvement of soil fertility through biological nitrogen (N) fixation. However, the symbiotic efficiency of pigeonpea with native soil rhizobia has not been determined adequately. This study was designed to determine the variation in the N fixation ability of pigeonpea inoculated with the native rhizobia. Forty soil samples were collected from diverse locations across South Africa and used for inoculating pigeonpea seed. Each pigeonpea genotype was inoculated separately with each soil sample and raised in a nitrogen-depleted growth medium in the greenhouse. A split-plot experimental design was used in the study. Several N fixation variables of pigeonpea were measured. There was >40.0% difference in the number of nodules between genotypes ‘Ex-PP-MD-321’ and ‘Mpuma-B-Spot’ but the nodule dry weight between the two genotypes was >80.0%. In contrast, the heaviest dry shoots (0.4513 g), weighed 52.0% heavier than those that were observed for ‘Mpuma-B-Spot’. Pigeonpea showed differential N fixation ability with the nodules, suggesting that there was potential to select for optimum host × rhizobial isolate combinations for the process and to expand the production area of the crop.

Greenhouse and laboratory investigations using four soils were conducted to determine the influence of seven herbicides on symbiotic nitrogen (N2) fixation by soybeans [Glycine max (L.) Merr. ‘Davis’]. Soils were treated with recommended rates of herbicides immediately after planting. After 8 to 10 weeks the nodulated root systems were assayed for nitrogenase activity using the acetylene (C2H2) to ethylene (C2H4) reduction technique, and total numbers and dry weights of nodules were determined. Metribuzin [4-amino-6-tert-butyl-3-(methylthio)-as-triazin-5(4H)-one] (0.3 kg/ha) decreased nodule dry weight and C2H4 production per plant per hour in a Convent sandy loam. Alachlor [2-chloro-2’,6’-diethyl-N-(methoxymethyl) acetanilide] (2.2 kg/ha) and prometryn [2,4-bis(isopropylamino)-6-(methylthio)-s-triazine] (0.6 kg/ha) also decreased C2H4 production per plant per hour in a Convent sandy loam, while metribuzin (0.6 kg/ha) increased C2H4 production per plant per hour and per milligram of nodule dry weight in a Mhoon silt loam. Prometryn (1.7 kg/ha) increased production of C2H4 per plant per hour in a Moreland silt loam. None of the herbicides affected C2H4 production, nodule number, or nodule dry weight in a Commerce silt loam.

The survival of two Rhizobium japonicum strains was determined in soils treated with 13 herbicides used in soybeans [Glycine max (L.) Merr.]. Survival in soils treated with concentrations equivalent to or 10-fold greater than those from field applications at recommended rates was compared to survival in untreated soil under controlled temperature and moisture conditions. Nine of the herbicides had transitory or no effects, regardless of rate. Acifluorfen {5-[2-chloro-4-(trifluoromethyl)phenoxy]-2-nitrobenzoic acid}, bentazon [3-(1-methylethyl)-(1H)-2,1,3-benzothiadiazin-4(3H)-one 2,2-dioxide], fluchloralin [N-(2-chloroethyl)-2,6-dinitro-N-propyl-4-(trifluoromethyl)benzenamine], and dinoseb [2-(1-methylpropyl)-4,6-dinitrophenol] consistently reduced survival of one or both strains at rates 10-fold greater than recommended. At rates of application equivalent to suggested field use rates, effects on survival were reduced or eliminated. Reductions in survival attributable to herbicides were in some cases comparable to those obtained by a weekly wetting and drying of the soil, indicating that herbicide effects on R. japonicum may be equivalent in magnitude to effects due to environmental stress. The herbicides were not sufficiently toxic to reduce R. japonicum populations in soil to levels that would be likely to affect nodulation.

This study examined the response of forage crops to composted dairy waste (compost) applied at low rates and investigated effects on soil health. The evenness of spreading compost by commercial machinery was also assessed. An experiment was established on a commercial dairy farm with target rates of compost up to 5 t ha−1 applied to a field containing millet [Echinochloa esculenta (A. Braun) H. Scholz] and Pasja leafy turnip (Brassica hybrid). A pot experiment was also conducted to monitor the response of a legume forage crop (vetch; Vicia sativa L.) on three soils with equivalent rates of compost up to 20 t ha−1 with and without ‘additive blends’ comprising gypsum, lime or other soil treatments. Few significant increases in forage biomass were observed with the application of low rates of compost in either the field or pot experiment. In the field experiment, compost had little impact on crop herbage mineral composition, soil chemical attributes or soil fungal and bacterial biomass. However, small but significant increases were observed in gravimetric water content resulting in up to 22.4 mm of additional plant available water calculated in the surface 0.45 m of soil, 2 years after compost was applied in the field at 6 t ha−1 dried (7.2 t ha−1 undried), compared with the nil control. In the pot experiment, where the soil was homogenized and compost incorporated into the soil prior to sowing, there were significant differences in mineral composition in herbage and in soil. A response in biomass yield to compost was only observed on the sandier and lower fertility soil type, and yields only exceeded that of the conventional fertilizer treatment where rates equivalent to 20 t ha−1 were applied. With few yield responses observed, the justification for applying low rates of compost to forage crops and pastures seems uncertain. Our collective experience from the field and the glasshouse suggests that farmers might increase the response to compost by: (i) increasing compost application rates; (ii) applying it prior to sowing a crop; (iii) incorporating the compost into the soil; (iv) applying only to responsive soil types; (v) growing only responsive crops; and (vi) reducing weed burdens in crops following application. Commercial machinery incorporating a centrifugal twin disc mechanism was shown to deliver double the quantity of compost in the area immediately behind the spreader compared with the edges of the spreading swathe. Spatial variability in the delivery of compost could be reduced but not eliminated by increased overlapping, but this might represent a potential 20% increase in spreading costs.

Summer leguminous cover crops can improve soil health and reduce the economic and environmental costs associated with N fertilizers. However, adoption is often constrained by poor weed suppression compared to nonlegume cover crops. In field experiments conducted in organic vegetable cropping systems in north-central New York, two primary hypotheses were tested: (1) mixtures of legume cover crops (cowpea and soybean) with grasses (sorghum–sudangrass and Japanese millet) reduce weed seed production and increase cover crop productivity relative to legume monocultures and (2) higher soil fertility shifts the competitive outcome in favor of weeds and nonlegume cover crops. Cover crops were grown either alone or in grass–legume combinations with or without composted chicken manure. Under hot, dry conditions in 2005, cowpea and soybean cover crops were severely suppressed by weeds in monoculture and by sorghum–sudangrass in mixtures, resulting in low legume biomass, poor nodulation, and high levels of Powell amaranth seed production (> 25,000 seeds m−2). Under more typical temperature and rainfall conditions in 2006, cowpea mixtures with Japanese millet stimulated cowpea biomass production and nodulation compared to monoculture, but soybeans were suppressed in mixtures with both grasses. Composted chicken manure shifted competition in favor of weeds at the expense of cowpea (2005), stimulated weed and grass biomass production (2006), and suppressed nodulation of soybean (2006). In a complementary on-farm trial, cowpea mixtures with sorghum–sudangrass suppressed weed biomass by 99%; however, both common purslane and hairy galinsoga produced sufficient seeds (600 seeds m−2) to replenish the existing weed seedbank. Results suggest that (1) mixtures of cowpeas with grasses can improve nodulation, lower seed costs, and reduce the risk of weed seed production; (2) soybean is not compatible with grasses in mixture; and (3) future costs of weed seed production must be considered when determining optimal cover crop choices.

Nitrogen fixation in legumes is an important agricultural trait that results from symbiosis between the root and rhizobia. To understand the molecular basis of nodulation, recent research has been focused on the identification of nodulation-related genes by functional analysis using two major model legumes, Medicago truncatula and Lotus japonicus. Thus far, three important processes have been discovered, namely Nod factor (NF) perception, NF signalling and autoregulation of nodulation. Nevertheless, application of the results of these studies is limited for non-model legume crops because a reference genome is unavailable. However, because the cost of whole-transcriptome analysis has dropped dramatically due to the Next generation sequencer (NGS) technology, minor crops for which reference sequences are yet to be constructed can still be studied at the genome level. In this study, we sequenced the leaf and root transcriptomes of Vigna angularis (accession IT213134) and de novo assembled. Our results demonstrate the feasibility of using the transcriptome assembly to effectively identify tissue-specific peptide clusters related to tissue-specific functions and species-specific nodulation-related genes.

Coastal wetland plant communities are strongly structured by water depth and salinity. Rising sea level will cause changes in the hydro-period, surface water salinity and salt-water intrusion in coastal areas, which will reduce the distribution of forests in these areas. We studied the dynamics of a Pterocarpus officinalis stand in Puerto Rico over a 9-y period. We observed differences in plant growth, recruitment and mortality across a salinity gradient within a 1-ha plot. In areas of high salinity, recruitment, juvenile density and growth rates of juveniles and adults were lower. The detrimental effect of salinity was also observed in a growth experiment; seedlings in 5‰ and 10‰ salinity treatments had higher mortality, slower growth and less above- and below-ground biomass than control seedlings (0‰). In addition, an increase from 0 to 1‰ in salinity resulted in approximately 50% less nodulation in seedlings. Low recruitment in high salinity areas and lack of recruitment in adjacent grasslands will further reduce the distribution of this forest type. Although some ecosystems can respond to changing conditions by migration to more favourable areas, this is not the case with P. officinalis, and thus, restoration efforts are needed to re-establish this species where it occurred historically.

Interactive effects of elevated atmospheric CO2 and soil N availability on N2 fixation and biomass production were examined using Gliricidia sepium, a tropical leguminous tree species. Our objective was to determine if elevated CO2 alters the inhibitory effects of soil N on N2 fixation, and whether the response of Gliricidia to elevated CO2 was a function of N source originating from either substrate N fertilizer or N2 fixation. We hypothesized that CO2 enrichment would ameliorate the inhibitory effects of N fertilization on seedling nodulation and N2 fixation through increased C partitioning to nodules. Seedlings were grown from seed for 100 d in growth chambers at either 350 or 700 μmol mol−1 CO2. Seedlings were inoculated with Rhizobium spp. and grown either with 0, 1 or 10 mM N fertilizer. The δ15N isotope-dilution technique was used to determine N source partitioning between N2 fixation and inorganic N fertilizer uptake. The addition of 10 mM N fertilizer significantly reduced nodule number and mass, specific nitrogenase activity, the specific rate of N2 fixation, and the proportion of plant N derived from N2 fixation. Elevated CO2, however, strongly ameliorated the inhibitory effects of N fertilization, indicating that increased C availability for nodule activity may partially offset the inhibition of N2 fixation caused by substrate N, as nodule sugar concentrations were stimulated with CO2 enrichment. This study clearly shows that elevated CO2 enhanced plant productivity and net N content of Gliricidia tree seedlings by stimulating N2 fixation. In addition, seedling biomass production was greatly enhanced by elevated CO2, regardless of whether plant N was derived from the substrate or from the atmosphere. We conclude from this study that CO2 enrichment mitigates the inhibitory effects of substrate N on nodule initiation and development and specific N2 fixation, either through increased C allocation to nodule production and activity, or through increased N demand by the plant for biomass production. This experiment with Gliricidia provides evidence for a positive feedback between increased atmospheric CO2 concentrations, C allocation to symbiotic N2-fixing bacteria, and plant C and N accumulation that may occur when N2-fixing plants are grown under conditions where substrate N may typically inhibit N2 fixation.

Applying silicon in the form of metasilicic acid (H4SiO3) or silicic acid (H4SiO3) to Bradyrhizobium-infected, hydroponically grown cowpea seedlings resulted in a significant (P[les ]0.05) increase in the number of nodules, nodule dry matter, and nitrogen fixed on a per plant basis. Total dry matter of plants increased with silicon supply, and the differences were significant (P[les ]0.05) at the higher silicon concentrations. Cowpea plants cultured in sand were also assessed for their response to silicic acid. Nodule number and nodule mass increased with silicon supply to sand cultured plants, though nitrogen fixation was unaltered. Although silicon is not essential for growth of cowpea, it is important for nodule formation and nodule functioning in hydroponically grown plants. Consequently, data collected and conclusions drawn from earlier glasshouse experiments, which have excluded silicon from nutrient solutions, may be flawed. Future studies on nodulation and nitrogen fixation using legumes in liquid culture must therefore include silicon as a nutrient element.

We previously found that the ethylene inhibitor Ag+ could overcome the inhibitory effect of nitrate on nodulation of soybean (Glycine max) cv. Bragg. The same treatment increased nodulation quantitatively under non-inhibitory conditions, strongly suggesting involvement of ethylene in the control of nodulation in this species. Supernodulation mutants that lack internal autoregulation of nodulation, however, had biosynthesis capacity similar to the wild type. In the present work, the effects of ethylene on nodulation of ‘Bragg’ and two separate, but allelic, supernodulating mutants (nts382 and nts1007) were compared. The nodulation process appeared much more sensitive than plant growth and development to ethylene, which reduced the number of nodules per plant, but nearly twofold more in the wild type than in the supernodulation mutants. The cause–effect relationship is established by the counteracting effect of Ag+ and the fact that the stronger the inhibition by ethylene, the higher the recovery of nodulation ability with the ethylene antagonist. This higher tolerance of or lower sensitivity to ethylene in nts382 persists even under low inoculum dose, where nodule number and mass could be decreased to wild-type levels. Differences between the mutant and the wild type in the triple response test do not appear to support differences in ethylene perception on a whole-plant basis. The results suggest that sensitivity of nodulation to ethylene might have been affected in supernodulation mutants.

Roots of Lablab purpureus (L.) Sweet were treated with tri-iodobenzoic acid (TIBA), kinetin or with nodulation factors (Nod factors) purified from Rhizobium sp. NGR234 and grown in the presence of a mycorrhizal inoculum (Glomus mosseae (Nicol. & Gerd.) Gerdemann & Trappe. Colonization by the mycorrhizal fungus was increased from <30% to c. 65% of root length when roots were treated with these growth regulators. Moreover, treatment of mycorrhizal L. purpureus roots with Nod factors or TIBA strongly induced sporocarp formation of Glomus mosseae. In parallel, the pool size of the fungal disaccharide trehalose was significantly affected in roots treated with TIBA and Nod factors alone, and with TIBA combined with all effectors, and increased from 0·06 mg g−1 d. wt in control roots to up to 1·7 mg g−1 d. wt (TIBA+kinetin). Conversely, the sucrose pool decreased from 5% d. wt to less than a half in roots treated with Nod factors. Activities of trehalase were significantly enhanced in mycorrhizal roots by the treatment with Nod factors or TIBA. When Nod factors and TIBA were added in combination, these activities were strongly enhanced suggesting synergism between these growth regulators.

Incidence and extent of damage resulting from attack by the striped bean weevil Alcidodes leucogrammus Erichs, were assessed by random sampling of cowpea plants in monocropped and within maize-cowpea-sorghum intercropping combinations at two locations. The biology and damage symptoms caused by the bean weevil are discussed. The effect of A. leucogrammus incidence on cowpea nodulation is evaluated and evidence presented that the weevil attack causes a reduction in the number of nodules. Emma 60, a local cowpea cultivar, exhibits some degree of resistance against A. leucogrammus (P < 0.05). Sorghum–cowpea intercropping combinations have significantly fewer weevils (P < 0.05) possibly as a result of the close spacing and tillering capacity of the sorghum companion crop which prevents or obstructs the weevil migration between rows.