Pongo pygmaeus pygmaeus is a subspecies of Bornean orangutan whose distribution is restricted to the northern part of the Kapuas River, West Kalimantan, and is categorized as Critically Endangered. In October 2017 we carried out a survey to estimate orangutan density in the peat-swamp forests of the Sungai Palin watershed, of the upper Kapuas river, Kapuas Hulu, West Kalimantan, Indonesia. Surveys for orangutans in 1991, in nearby Nanga Awen, had indicated the presence of orangutans in the peat-swamp forests of this area. We used distance sampling techniques to estimate orangutan densities from nest observations. We recorded 76 orangutan nests along 4.5 km transects in Sungai Palin in 2017, and 71 orangutan nests were observed along 4.3 km transects in Nanga Awen in 1991, giving densities of 1.29 and 2.62 individuals/km2, respectively. The results of this orangutan survey can be used as a baseline for monitoring of orangutan populations for conservation and management of this watershed landscape.