We carried out a comparative analysis between the bacterial microbiota composition of zoo-housed western lowland gorillas and their wild counterparts through 16S rRNA gene amplicon sequencing. In addition, we characterised the carbohydrate-active and methanogenic potential of the zoo-housed gorilla (ZHG) microbiome through shotgun metagenomics and RNA sequencing. The ZHG microbiota showed increased alpha diversity in terms of bacterial species richness and a distinct composition from that of the wild gorilla microbiota, including a loss of abundant fibre-degrading and hydrogenic Chloroflexi. Metagenomic analysis of the CAZyome indicated predominant oligosaccharide-degrading activity, while RNA sequencing revealed diverse cellulase and hemi-cellulase activities in the ZHG gut, contributing to a total of 268 identified carbohydrate-active enzymes. Metatranscriptome analysis revealed a substantial contribution of 38% of the transcripts from anaerobic fungi and archaea to the gorilla microbiome. This activity originates from cellulose-degrading and hydrogenic fungal species belonging to the class Neocallimastigomycetes, as well as from methylotrophic and hydrogenotrophic methanogenic archaea belonging to the classes Thermoplasmata and Methanobacteria, respectively. Our study shows the added value of RNA sequencing in a multiomics approach and highlights the contribution of eukaryotic and archaeal activities to the gut microbiome of gorillas.

Syngamid strongylids of the genus Mammomonogamus undoubtedly belong among the least known nematodes with apparent zoonotic potential and the real diversity of the genus remains hard to evaluate without extensive molecular data. Eggs of Mammomonogamus sp. are frequently found in feces of African forest elephants (Loxodonta cyclotis) and western lowland gorillas (Gorilla gorilla gorilla) in Dzanga-Sangha Protected Areas. Using sedimentation-based coproscopic techniques, we found the eggs of Mammomonogamus in 19·7% elephant and 54·1% gorilla fecal samples with 8–55 and 1–24 eggs per gram of fecal sediment for elephants and gorillas, respectively. We used a combination of light microscopy, scanning electron microscopy and analysis of cytochrome c oxidase subunit I (cox1) and a partial sequence of 18S rDNA isolated from single eggs to test the hypothesis of possible Mammomonogamus conspecificity in gorillas and elephants. Whereas 18S rDNA sequences were identical in both gorillas and elephants, we distinguished seven different haplotypes within the cox1. Two haplotypes were found in both gorillas and elephants suggesting sharing of Mammomonogamus. Assignment of the parasite to M. loxodontis is proposed. Provided sequences represent the first genomic data on Mammomonogamus spp.

Understanding the ecological function of large frugivores in tropical forests is important considering their central position in seed-dispersal networks. This study illustrates the seed-dispersal effectiveness of a western lowland gorilla (Gorilla gorilla gorilla) population in Cameroon by looking at the interaction of seed quantity, species regeneration traits and the environmental characteristics of the deposition sites (sleeping sites vs. feeding trails) in order to discuss the role of gorillas within the ecosystem. The analysis of 1030 faecal samples collected over a 3-y period (September 2009–August 2012) showed that gorillas dispersed a diverse array of species (58 spp. identified), with an average of 289 intact seeds (>5 mm) d−1 per individual. Seed damage during mouth and gut processing occurred for 12 spp., generally accounting for <5% of specific seed load. Germination trials suggested that germination success of passed seeds remained unchanged (N = 6 spp.) or improved (N = 5 spp.) after gut passage compared with hand-cleaned seeds, with one exception. Indicator species identification (IndVal method) and General Discriminant Analysis suggested that sleeping sites (N = 36), as a main type of seed deposition site, correspond to regenerating microhabitats and correspondingly degree of canopy openness is one variable discriminating significantly this type of deposition site with random locations in the forest (N = 36) used as a proxy for non-directed seed deposition on feeding trails. With a mean canopy openness of 19–27%, sleeping sites offer optimal light conditions for the seedling recruitment of non-pioneer light-demanding species, the seeds of which encompass 47.4% of the total seed load dispersed over the 3-y period. From this study, it is hypothesized that the gorilla performed directed-dispersal of some light-demanding plant species at sleeping sites, and hence, by being actively implicated in gap-phase dynamics, fulfils a valuable ecological function within its ecosystem.

For endozoochorous seed dispersal systems, the extant dung beetle assemblage at seed deposition sites may influence site suitability as burial activity may change the probability that seeds germinate and seedlings establish. This study tested if the different conditions of the two main seed-deposition habitats of a western lowland gorilla population of south-east Cameroon (sleeping sites and old secondary forest) influenced dung beetle assemblages and consequently the seed relocation patterns. In March 2012, in both habitats, burial patterns (proportion and depth) were described in eight stations based on two 300-g experimental faeces with known number of Uapaca spp. seeds (N = 75) left for 48 h, and beetle assemblages were described based on one 48h-dung-baited pitfall trapping session in five of these stations. To assess the impact of burial pattern on seedling emergence, Uapaca seedling emergence trials were performed in a nursery (75 seeds per depth treatment). Assemblage at sleeping sites had a higher species richness (non-significant) and was significantly more abundant than in old secondary forests. Conversely, significantly more seeds were buried in old secondary forests than sleeping sites and at significantly greater depths (mean: 14.9 cm vs. 8.7 cm). As trials suggested that burial depth ≥7 cm prevented Uapaca seedling emergence, dung beetles are assumed to induce seed loss more strongly in old secondary forests than sleeping sites (20.5% vs. 6.7% of initial seed crop). The demonstration that dung beetles may exert a negative influence on seed fate overall, and that the degree to which this occurs may vary depending on habitat, highlights the complexity in determining the suitability of deposition sites for recruitment.

The use of population modelling has become an increasingly common tool in reintroduction planning and assessment. Although initial reintroduction success is often measured by quantifying post-release survival and reproduction, longer-term success is best assessed through measurements of population viability. Here we develop a population model capable of providing useful results for influencing management of a reintroduction programme for a long-lived and slow-reproducing primate, the western lowland gorilla Gorilla gorilla gorilla. We used post-release monitoring data from two reintroduced populations in the Batéké Plateau region of Congo and Gabon, complemented with published data on wild and captive populations, to develop a population model using Vortex. Sensitivity testing illustrated that the model was highly sensitive to changes in the input parameters for annual birth rates, the number of lethal equivalents, and for female annual mortality rates, especially for adults. The results of the population viability analysis suggested that the reintroduced gorilla populations have a reasonable chance of persistence (> 90% over 200 years) but illustrated that reinforcement of the populations could significantly improve probabilities of population persistence and retention of genetic diversity. Equally, catastrophic events could have significant negative impacts. Continued monitoring of the populations should allow refinement of the model, improving confidence in its predictions and its relevance to decision-making.

Information on the densities of threatened species in non-protected areas is crucial for assessing the degree of isolation of adjacent protected areas and consequently their potential for preserving species from extinction. Relatively few studies, however, provide such information. We present the results of a survey of the densities of two great ape species, the gorilla Gorilla gorilla gorilla and chimpanzee Pan troglodytes troglodytes, in a non-protected area on the northern periphery of Dja Faunal Reserve, Cameroon. Densities of chimpanzees and gorillas were estimated to be 1.1 and 3.8 weaned individuals per km2, respectively. The results confirm that gorillas prefer building nests in vegetation types with limited visibility, and that within preferred vegetation types for nesting, gorillas select patches that are the most difficult to penetrate, resulting in less conspicuous nests. Although the opposite tendencies were exhibited by chimpanzees, no firm conclusions could be drawn from our data. Despite its non-protected status and past and ongoing logging activities in the area, the densities of gorillas and chimpanzees on the northern periphery of Dja Faunal Reserve are comparable to those found within the reserve itself, indicating the need for developing alternative conservation action to protect these important populations. The creation of a Communal Wildlife Zone in this area is legislatively possible, and could be an effective conservation tool because it has to originate from the local people.

The population density and nesting behaviour of gorillas (Gorilla gorilla gorilla) was studied in the Ngotto forest, Central African Republic. We carried out a nest count along 94 km of transects. Also, the herbaceous vegetation of the understory was quantified and we attempted to assess the decay rate of nest sites. A total of 145 gorilla nests in 27 nest sites was found. We found 82.1% of gorilla nests > 2 m above ground. There was a significant correlation between the height of nests and the diameter of trees with nests. The density was estimated at 0.34–0.40 weaned gorillas per km2 depending on the value of nest site decay rate used. The herbaceous vegetation was scarce in the study site (42 out of 50 quadrats had no herbaceous stems). Compared with the gorilla population of the nearby Dzanga-Sangha forest, the population density of gorillas at Ngotto was lower but the proportion of nests found above ground was much higher. These differences are discussed and we suggest that they were the result of the scarcity of herbaceous vegetation in the Ngotto forest.