We present three examples of countable homogeneous structures (also called Fraïssé limits) whose automorphism groups are not universal, namely, fail to contain isomorphic copies of all automorphism groups of their substructures.
Our first example is a particular case of a rather general construction on Fraïssé classes, which we call diversification, leading to automorphism groups containing copies of all finite groups. Our second example is a special case of another general construction on Fraïssé classes, the mixed sums, leading to a Fraïssé class with all finite symmetric groups appearing as automorphism groups and at the same time with a torsion-free automorphism group of its Fraïssé limit. Our last example is a Fraïssé class of finite models with arbitrarily large finite abelian automorphism groups, such that the automorphism group of its Fraïssé limit is again torsion-free.