We describe a new approach to elucidate the role of 3′-end
processing in pre-mRNA splicing in vivo using the influenza
virus NS1A protein. The effector domain of the NS1A protein,
which inhibits the function of the CPSF and PABII factors
of the cellular 3′-end-processing machinery, is sufficient
for the inhibition of not only 3′-end formation but
also the splicing of single-intron pre-mRNAs in vivo. We
demonstrate that inhibition of the splicing of single-intron
pre-mRNAs results from inhibition of 3′-end processing,
thereby establishing that 3′-end processing is required
for the splicing of a 3′ terminal intron in vivo.
Because the NS1A protein causes a global suppression of
3′-end processing in trans, we avoid the
ambiguities caused by the activation of cryptic poly(A)
sites that occurs when mutations are introduced into the
AAUAAA sequence in the pre-mRNA. In addition, this strategy
enabled us to establish that the function of a particular
3′-end-processing factor, namely CPSF, is required
for the splicing of single-intron pre-mRNAs in vivo: splicing
is inhibited only when the effector domain of the NS1A
protein binds and inhibits the function of the 30-kDa CPSF
protein in 3′-end formation. In contrast, the 3′-end
processing factor PABII is not required for splicing. We
discuss the implications of these results for cellular
and influenza viral mRNA splicing.